CI01000009_00300778_00315275


Basic Information

Item Value
gene id CI01000009_00300778_00315275
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 300778 ~ 315405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00300778_00315275.mRNA
ATGAGATCATGCAGAAGGAGTCCAGTCCTCTCTTCGCTGCTGACATCATCACTGAGCTCAAGAGACAGTTTGCGTTCCTGTCAGGGGGAAGAGGACAGGACGGAAGCCCTATCATTATCTTCCCAGAATTCCCTTCCTTTTGTGAACTTGGAGACCAAGAGTTTCGTAATGTTCTCACCTACCTGACAAGTATTCCCAGTCTGAGTGCAGCAGGTGCGGGCTTTATCGTGGTGATTGATAGGCGTCGAGATCGATGGACGTGTTTAAAGGCAACATTACTGCGTATCTCAGGCTGGTTTCCTGCTAATCTTCGTCTCGTTCTGGTGCTGAGACCCAGTGCTATCCTGCAGCGAACATTGTCTGACGTGTTCTTTAAACTACACAGAGATGACTTTAAAGTACCGGTCCTCATGCTAAGCTCAGTGGTTGATCTGCACTTTTATATTGAGCGGAGTCAGCTGACACAAGAACTGGGTGGCTCTCAATACTACTGCCACAAGACCTGGATTTCTCATCGCACTGAAGAGATCACAGGAGCTCACAGCCAAGGACGGAAACTCTTGGAGAACATCAGGGAACCTGTTCGCAGAGATCCGGACAGCAGTCTAAACCCCGATCAGCTGGAGAACCTTGCTACAGTGCACAGGCTATTATCCCAGTTGAATGAGAGCTCTACAGCATTTGATGAGTTCTGGATTCAGCATCAAAATAAACTGGAGCTATGTTTGAAACTCTGCCAGTTTGAGCACAGCTTTCAACAGTTGCAAACAGAGCTGGAGCAGGCAACAGAAACACTGAATGCTTTTTCAGATGTTGGAATAAGCCCCGCCCAAACAGAACACCTCCTTCAAGAACTGACCAATCACGAAAAGACAGTCTGTGAAGTGCTGGACAGAGTAAGATCTGTGGTTGCCGAGGGCCAAGGATTGATTGACAGCTCTCAGAATGTTGATGACAGTGTTGCAGTAAAATGCAGTGAGCTACAGAAAGCGAGAGAGCATCTCATCCAAGAGCTAAAAGACAAGAAGACCATGCTGACACAGGCTATGGAGCTACATAGAAGACTGGAAATGGTGTGTAAATGGTGTGATGATGGGATTTACATGCTAGCATCACAGCCTCTTGACAAGTGCCAATCACAGGAGGGGGCGGAGTCAGCACTGTCAGAGCTGGAGTTTTACCTGGAGACAGCCAATGAGAAACAGCTGTGGGAGATCAGCACAGTTTGGCTGGAATATGAGAGCATACTGAACAATGAGCTCAGGGTAAGCTTTGATCAGGTTGACAGGAGCAGTCGCAATCCTTCTGTATCTGAGGAGGAGGAAACCCTGGCTGTGCTGCGCAGGCATGTAATGAATGAGTTACTGGAAACAGAGAGAGCATATGTGGAAGAGCTTATGTGTGTTTTGCAGGGATATGCTGCTGAGATGGACAACCCCTCCATGGCTACTCTCATCCCTGCAGCCCTGCAGAACAAGAAGGATGTGTTATTTGGGAACATGCAGGAGATTTATAATTTCCACAAAAGAATATTCCTCAAAGAGCTGGAGACTTACACTGACTGTCCTGAGCTTGTGGGACGCTGCTTTTTAAACTGGATGAGGGAGCTGCAGATTTATGAGAAATACTGTCACAACAAGCCTCGTTCTGAGAGCCTCTGGAGACAGTGCTCAGACTGCGCCTTCTTCCAGGAGTGTCAGAAAAAACTAGAGCACAAGCTGGGGCTGGACTCATATCTACTAAAGCCTGTCCAGAGGATCACTAAGTACCAGCTCCTGCTAAAGGAGATGATTAAGTACAGTAAAGGCTGCGAGGGCTCAGTGGAGCTGCAGGCAGCTCTTTCATCCATACTAGGGATCCTGAAGGCTGTAAATGACTCAATGCATCTCATTGCCATCACAGGATATGAGGGTAATCTTGGAGACCTGGGTCGCCTGCTGATGCAGGGGTCATTCAGTGTGTGGGCGGAGCATAAGAGAGGTCATGTGAAGGTGATAGAGCTGGCCAGGTTTAAGCCCATGCAGAGACACCTGTTCCTGCACGAGAAAGCTCTGCTCTTCTGCAAGAGACGAGAGGAGAGCGGAGAGGGATATGAGAAAGCCCCCTCATATAGCTTCAAACAGGAGCTCAGCATGGCTGCTATTGGAATAACAGAGACTGCTAAAGGGGACAGCAAGAAGTTTGAGATCTGGTCCAGGTCAAGGGATGAAGTCTACACAGTACAGGCCGTGTCTGAGGAGGTTAAGACCATCTGGGTGACAGAAATCCAGAAACTTCTAACAGGACAACTGGAGGCCTACAAAGAGGCACGTCAACAGAAGGCACCTGAACAGTTCACCTCAGAGACCAGCTCGACTAACAGACTGGTGAAAAATGAAAGTAGTAACCTCAGGAGCGGAGGAGCAGAGAAACAGAAGACAGAAGAGGAAAGAGGCAAAGAACTTGAGAACATTCTAGAACCTGGAATGACACAGAGAGCGAAAGGGTCTTCGTTCAGCTTTGAGACGAAACCAAAACGACAGGATATCCGAAGTGACCCAACACCTCTAGGTTGGACTAAAGGATCTCTTTCACTGGATGCCTCTGTGGAGCATGATGGATACTTTAGTGCAGAGGAGCAAGTGACCTCTGACCCCGAGGAGGAGAAGGAAGATAAACTGTGTGAAGATGAGCTGCAGTCTATGAAGATACAGGAAGAGATCCAGCTTTCTGAAGAGACTGAAGATCCTGAGGAATGAGAGTTGAGTGTAAACGTGTCTGAAATGCCATCAATGTACAGCATATACACTATGAGTCTTGCATAACTCTGGAAAAGAGGCAAATGAGACATATTAAACATTAACTTTGAAGTTTTGCATACTCTTAAAA

Function

GO:      GO:0005089, GO:0035556, GO:0005085, GO:0035023

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00300778_00315275.mRNA True 2868 mRNA 0.47 25 300778 315405

Neighbor

gene id symbol gene type direction distance location
CI01000009_00260081_00285692 RNF17 coding upstream 15067 259906 ~ 285711 (+)
CI01000009_00242093_00247335 FDX1 coding upstream 53435 241961 ~ 247343 (+)
CI01000009_00179808_00221387 UGGT2 coding upstream 79391 179808 ~ 221387 (+)
CI01000009_00094836_00095813 NA coding upstream 204029 94371 ~ 97230 (+)
CI01000009_00318494_00322434 NA coding downstream 2851 318256 ~ 323055 (+)
CI01000009_00326208_00333904 NA coding downstream 10803 326208 ~ 334301 (+)
CI01000009_00343750_00344964 TRIM13 coding downstream 28345 343750 ~ 345290 (+)
CI01000009_00363403_00368182 RNASEH2B coding downstream 47998 363403 ~ 368216 (+)
CI01000009_00378726_00379550 NA coding downstream 63321 378726 ~ 379804 (+)
G50508 NA non-coding upstream 77930 176066 ~ 222848 (+)
G50480 NA non-coding upstream 182778 117563 ~ 118000 (+)
G50473 NA non-coding upstream 201722 97886 ~ 99056 (+)
G50469 NA non-coding upstream 221262 79280 ~ 79516 (+)
G50662 NA non-coding downstream 19634 335039 ~ 335961 (+)
G50664 NA non-coding downstream 43073 358478 ~ 358706 (+)
G50666 NA non-coding downstream 65143 380548 ~ 380857 (+)
G50627 NA non-coding downstream 65809 381214 ~ 385408 (+)
G50639 NA non-coding downstream 72793 388198 ~ 388652 (+)
G50920 NA other downstream 454436 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1107442 1429873 ~ 1435328 (+)
G51122 NA other downstream 1364741 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1578830 1897343 ~ 1919516 (+)
G51274 NA other downstream 1939694 2255099 ~ 2350486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location