CI01000009_00363403_00368182 (RNASEH2B)


Basic Information

Item Value
gene id CI01000009_00363403_00368182
gene name RNASEH2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 363403 ~ 368216 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00363403_00368182.mRNA
CAAACTTATGGAACCATGTTAATGTGCAAGGTGTGTTTGCCTAATTTTGCATGTGTGTGGGAGGAGATGTTTGCCGCCATTTTTCTGGAGGCAGAGCAGCAGAACAACAACTCAACGGTCTTTCGCTCTTATATTATACGCATCAGAAAAACGGTTGTTACAGTTGAACGTTTCAACTCAACCCTTGAAATGACTACCAAAAAGAAACGCTCTGTGCACACCGACAACGATAGCTGGGTTGTCATTGCTTCAGATGCAGCACTGGACACAGGCAGATCCAAAGACAGTGATCCATCCTTCATCAAATTAAAGAATCCTGCTACAGGAAGTTCTTCGCTGTACCTGTTTGGCTGTGGCGATATCAGTGTTTATGAAGTTAAAGCTTTTTCTGAAGACTTTAGATCTTGGTTTATTGGACAGACAGTGCAAAGAGATGGTAGATTGCTGTATGCGACTCCCATTGATCCTTTATTTCTTCTGTTGCCATACATTAGCTGTGTCGGCACCGAGGGAAAGTTCCAGCCGGTGAAGCAGATGGTAATGGATGAGGATTATCCTGGATGCACAAGACTTCTGCAGTGCAAACAGGGACTGGACTCTCTTCATTATGTGGCTGATGAGAAAGAGGCTGGCAGTCAGAAGTTTCACAGATATAACCATGAGAAGACCTTGGAGTGGCTTAAGAAAAAGGTTCAGCGGACAGTAAGCACACTCAAAAAGAGCAACGTATCTGTAGGTGGAGGAGTGAAGTCCAGCACATTTGTCAGAGTAAAACAGGAAGATGCTACTGAAGAGGACTACTTACGTTACGCACATGGCCTCATATCAGAGTACATCAGTGAAGACCTGAGCAAAGATCTTCTCAAGCATTTGCAGTTGCCAGAGATATCCAGCCCTAAAGAGACAGAACCACCTTCTAAGAAACGGAAACTGTCAGATAAACCGGTAGAGGCCGGAGAAGACTACACCAAGTTCAACAGTGCTGATTTTGCACGAAAACCACCGAAGAAGATGACTGCAGCTCAGAAGAGTCTTGCCAAAGTAGACAAAACGGGCATGAAAAGCTTGGCGATGTTCTTCAGTCCCAAAGTCAAACAAGAGAAGAACTGAGTGAGTGTTTGTGTGTGTCAAAACATTTTTGTTA

Function

symbol description
rnaseh2b Predicted to be involved in RNA catabolic process and ribonucleotide metabolic process. Predicted to be located in nucleus. Predicted to be part of ribonuclease H2 complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesenchyme. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2B (ribonuclease H2 subunit B).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10744 RNASEH2B; ribonuclease H2 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00363403_00368182.mRNA True 1144 mRNA 0.44 12 363403 368216

Neighbor

gene id symbol gene type direction distance location
CI01000009_00343750_00344964 TRIM13 coding upstream 18113 343750 ~ 345290 (+)
CI01000009_00326208_00333904 NA coding upstream 29102 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 40348 318256 ~ 323055 (+)
CI01000009_00300778_00315275 NA coding upstream 47998 300778 ~ 315405 (+)
CI01000009_00260081_00285692 RNF17 coding upstream 77692 259906 ~ 285711 (+)
CI01000009_00378726_00379550 NA coding downstream 10510 378726 ~ 379804 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 172553 540769 ~ 545997 (+)
CI01000009_00547369_00551459 NA coding downstream 179153 547369 ~ 552216 (+)
CI01000009_00603498_00605392 NA coding downstream 235012 603228 ~ 605392 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding downstream 237150 605366 ~ 606070 (+)
G50664 NA non-coding upstream 4697 358478 ~ 358706 (+)
G50662 NA non-coding upstream 27442 335039 ~ 335961 (+)
G50508 NA non-coding upstream 140555 176066 ~ 222848 (+)
G50480 NA non-coding upstream 245403 117563 ~ 118000 (+)
G50473 NA non-coding upstream 264347 97886 ~ 99056 (+)
G50666 NA non-coding downstream 12332 380548 ~ 380857 (+)
G50627 NA non-coding downstream 12998 381214 ~ 385408 (+)
G50639 NA non-coding downstream 19982 388198 ~ 388652 (+)
G50633 NA non-coding downstream 20534 388750 ~ 389122 (+)
G50631 NA non-coding downstream 27159 395375 ~ 495961 (+)
CI01000009_00094836_00095813 NA other upstream 267616 94371 ~ 97230 (+)
G50920 NA other downstream 401625 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1054631 1429873 ~ 1435328 (+)
G51122 NA other downstream 1311930 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1526019 1897343 ~ 1919516 (+)
G51274 NA other downstream 1886883 2255099 ~ 2350486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location