CI01000009_00541592_00545933 (CMSS1)


Basic Information

Item Value
gene id CI01000009_00541592_00545933
gene name CMSS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 540769 ~ 545997 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00541592_00545933.mRNA
GCATTAAAACAAACTAGGCACCCTTTTCTCAGTTGCCAACTGCTCTTGAATAATTAGGTATGGCTTTAGAGAATTTCTCTACAAAATCTTATCCATCTTTGGTTAACCACAAGTGATCTCTGTGTTAGATGAACAGCCTGTGAAGTTGCTTTCAGTGCTGTACGCTGAAGGGAAACAGATTTTTAATTCATGTTTGTGATGAATAAATAATTGCGTGCGCGTTCTTGTGTATGTATATGCGAGCGCGCATAGACGGGTAGGGGCGCGAGGGCTTGGAATAAGAAAGGAGAAATTATAGAGTAATGACCAGTCAAAAAGTGTGGTGGAAAGTGGAACAAACGAGCACACACACATCTCAAATTCTCTGTCCCGGTCCAACATTCACACACACACATACATACACACAGAGATGGTAAACACCCTGCAGAGTGGTAATTATAATTTTATAGGACTCAGCGCCGCCTAGTGGTTCAGACTTAGTTAATCTGAATACCGCATAATGTAACCACATTAAACCCGAAAAATATCACACTGCCTCGGCTCAGTTACGTTTAGACATATATTTATGTTACAAATAAACCTCAATAATCAAACAAGTAACTAAAAAACATTAACGTAAAATTTTTGTAATACTCGAATTCTTTTTTTCTGCTTACAATTACATAAACCTTATTCTAAAATCATTTTATTTGATGGTTCGTTTATTATTTCAATAATAGCGTCACAATCATCATAAATATTCTTACCGGTAGATTCGCGCATGTTTTTCTACCATGCGAATCTGCCGTGCGCAAACTCCAGACATGCGATTGCGGTTTGAGACATGGCTGATGATTTAGGAGACGAGTGGTGGGCCCAGGAAGACAATTCAGGTGTGTCAGAGGTAGAGGAGGACACAGAGCCACTTACAGAAGAACAACCGATTAAATCTACTTCAAAGAAAAGGAAGGGTGAAAAACAGATTCAAGACAGCACCAAGAAAAAGAAGAGGAAGAAAACAGTTAAGAAAGAATGTTTCATCACACAGGAGAGATCAGAAGAAAAGGGTGATAAGGAGTCCAACAAAAGCAAGAAGAGAAGAAAGAAGAAGAAAACTATCACAGATGTCCTGATGAGCTCCGAGCCTGCGCCGGGCACTCCAGCTGACCTTATGAGCCTTCTGAAGAATCACTACAGCCAGACGCGCTCTGTTATTGAGCAGGAAGAGCTGACGCTTAATGACTCTTGTTTCCTCAGCAGTAATGACCTTACACATAGCTTGTCTTCTTACCTCAAAGAAGTTTGTCCAAAGTGGGCTAAAATCCAGAAGCAGCACACCCAGACCCGGTCAGTGGTGTTGCTCATCGTTTGCGGATCCGCACTCAGAGCCATTGATGTCATTAAGCAGCTGATGGCATTTAAAGGTCAAGCTAAAGTGCTAAAGCTGTTCGCGAAACACATCAAAGTGGATGACCAGATAAAGTCGTTGAGTAAAGGTGTGACACATATTGCCGCTGGAACTCCTGGGAGAATTTGTGCCTTGTTAGAGAAAGAGGGTTTGACTGTACAAGGACTGAAGTATCTGGTACTGGACTGGAACTATCGAGACCAGAAGCTCAGGAGAATGGTGGATATACCAGAGGTAACACTGACATACTGTATATGCTGTTTTCAGATAGGACAGACATGTTTATTATAACATTACAAAGATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTAATGCCGATATAGCA

Function

symbol description
cmss1 Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog).

NR:

description
uncharacterized protein c3orf26-like protein

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K14784 CMS1; protein CMS1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00541592_00545933.mRNA True 1742 mRNA 0.40 8 540769 545997

Neighbor

gene id symbol gene type direction distance location
CI01000009_00378726_00379550 NA coding upstream 160965 378726 ~ 379804 (+)
CI01000009_00363403_00368182 RNASEH2B coding upstream 172553 363403 ~ 368216 (+)
CI01000009_00343750_00344964 TRIM13 coding upstream 195479 343750 ~ 345290 (+)
CI01000009_00326208_00333904 NA coding upstream 206468 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 217714 318256 ~ 323055 (+)
CI01000009_00547369_00551459 NA coding downstream 1372 547369 ~ 552216 (+)
CI01000009_00603498_00605392 NA coding downstream 57231 603228 ~ 605392 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding downstream 59369 605366 ~ 606070 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding downstream 62516 608513 ~ 609375 (+)
CI01000009_00611583_00617762 TFG coding downstream 65308 611305 ~ 617762 (+)
G50735 NA non-coding upstream 2258 538171 ~ 538511 (+)
G50719 NA non-coding upstream 36150 504418 ~ 504619 (+)
G50631 NA non-coding upstream 44808 395375 ~ 495961 (+)
G50633 NA non-coding upstream 151647 388750 ~ 389122 (+)
G50639 NA non-coding upstream 152117 388198 ~ 388652 (+)
G50855 NA non-coding downstream 44135 590132 ~ 590613 (+)
G50881 NA non-coding downstream 77737 623734 ~ 623957 (+)
G50883 NA non-coding downstream 90477 636474 ~ 636705 (+)
G50880 NA non-coding downstream 98788 644785 ~ 645049 (+)
G50878 NA non-coding downstream 148029 694026 ~ 695215 (+)
CI01000009_00094836_00095813 NA other upstream 444982 94371 ~ 97230 (+)
G50920 NA other downstream 223844 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 876850 1429873 ~ 1435328 (+)
G51122 NA other downstream 1134149 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1348238 1897343 ~ 1919516 (+)
G51274 NA other downstream 1709102 2255099 ~ 2350486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location