CI01000009_00608513_00609159 (JAGN1, JAGN1A, JGN1A)


Basic Information

Item Value
gene id CI01000009_00608513_00609159
gene name JAGN1, JAGN1A, JGN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 608513 ~ 609375 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00608513_00609159.mRNA
ATGGCATCACGTGCTGGCCCAAGAGCTGCAGGGACTGACGGGAGTGATTTTAAACACAGAGAGAAAGTGGCATCTCACTATCAGATGAGTGCTTCATTGAAATCAGAGATAAAGAAGCTCACCGTAGTGCATTTCTTCATATGGATACTGGTGGCGGCTCAGGTGGCTGTTAGTCACCTCAATCTGGTGTCACATGACTTGGTGGCCATGCCCTATCAGTGGGAGTACCCCTACCTTTTGAGTCTCCTGCCCTCGTTTATTGGAGCCCTGGCCATGCCGAAAAACAACATCAGCTACCTGGTGATCTCCATGATCAGTGCTGGTTTGTTCTCTGTGGCACCCTTGATTTTTGGTGCAATGGAAATGTTTCCACTGGCCCAGCAGCTGTACAGACACGGGAAGGCCTACCGGTTTATCTTTGGCTTCTCGGCGGTCTCTGTGATGTATCTACTCATGGTGATTGCTATTCAGGTGCACGCATGGCAAATCTACTACAGCAAGAAGCTTCTAGACGCCTGGTTCAACTCAACACAAGAGAAGAAGAAGAAATAAAAACACTATTGTGCTTTAATTTATCCACAGTCTTTTCTGTCAGTTGTTACTGTACAATGCATGCAATTATTTTTAACGTTTAATATATATTTGTAAGCCAACAAAGCTTACTTAATATTATCTGCATTTTACATTTATTCACATATATTTACATTGTTTACTTTGCAATATAAATGTTGTTATAACATGTTATTTAAAATGTAGAATTCTGTTTAA

Function

symbol description
jagn1a Predicted to be involved in several processes, including granulocyte colony-stimulating factor signaling pathway; neutrophil differentiation; and neutrophil migration. Predicted to act upstream of or within immune system process and protein transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in severe congenital neutropenia 6. Orthologous to human JAGN1 (jagunal homolog 1).
jagn1 Involved in granulocyte colony-stimulating factor signaling pathway; neutrophil differentiation; and vesicle-mediated transport. Located in endoplasmic reticulum. Implicated in severe congenital neutropenia 6.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00608513_00609159.mRNA True 768 mRNA 0.42 2 608513 609375

Neighbor

gene id symbol gene type direction distance location
CI01000009_00605366_00605964 COL8A1, COL8A1A coding upstream 2443 605366 ~ 606070 (+)
CI01000009_00603498_00605392 NA coding upstream 3121 603228 ~ 605392 (+)
CI01000009_00547369_00551459 NA coding upstream 56297 547369 ~ 552216 (+)
CI01000009_00541592_00545933 CMSS1 coding upstream 62516 540769 ~ 545997 (+)
CI01000009_00378726_00379550 NA coding upstream 228709 378726 ~ 379804 (+)
CI01000009_00611583_00617762 TFG coding downstream 1930 611305 ~ 617762 (+)
CI01000009_00620687_00621072 NA coding downstream 11312 620687 ~ 621537 (+)
CI01000009_00704243_00710805 NA coding downstream 94690 704065 ~ 710805 (+)
CI01000009_00719164_00724772 SRPX coding downstream 109789 719164 ~ 725051 (+)
CI01000009_00805606_00808374 NA coding downstream 195529 804904 ~ 808404 (+)
G50855 NA non-coding upstream 17900 590132 ~ 590613 (+)
G50735 NA non-coding upstream 70002 538171 ~ 538511 (+)
G50719 NA non-coding upstream 103894 504418 ~ 504619 (+)
G50631 NA non-coding upstream 112552 395375 ~ 495961 (+)
G50633 NA non-coding upstream 219391 388750 ~ 389122 (+)
G50881 NA non-coding downstream 14359 623734 ~ 623957 (+)
G50883 NA non-coding downstream 27099 636474 ~ 636705 (+)
G50880 NA non-coding downstream 35410 644785 ~ 645049 (+)
G50878 NA non-coding downstream 84651 694026 ~ 695215 (+)
G50902 NA non-coding downstream 88230 697605 ~ 697840 (+)
CI01000009_00094836_00095813 NA other upstream 512726 94371 ~ 97230 (+)
G50920 NA other downstream 160466 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 813472 1429873 ~ 1435328 (+)
G51122 NA other downstream 1070771 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1284860 1897343 ~ 1919516 (+)
G51274 NA other downstream 1645724 2255099 ~ 2350486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037217 jagn1a coding NC_007120.7 CM002893.2 30108641 ~ 30111105 (+)
mexican tetra (Astyanax mexicanus) G304498 jagn1a,LOC103032247,LOC108432576,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432 non-coding NW_019172839.1 APWO02000109.1 1814587 ~ 1818271 (+)