G50664


Basic Information

Item Value
gene id G50664
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 358478 ~ 358706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57660
CTGATTACTGCCGACTGCATCATTCGGATAATGACTTAAAATTTGGCACCGCTTTGTGACTATTTGACCAGCAAACCCCGATGATTCGTTTAGGAATATCTGGTGGTTATGTGACTAAATTGCTTTCTAAACCACATCCTTATTTTGCAGGCATTAACTGCAACTGTACAGACAACCACTATCTACCACATAGTGCTATATATGTTAAAGAAAACACGATGGCTTTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57660 True 229 lncRNA 0.38 1 358478 358706

Neighbor

gene id symbol gene type direction distance location
CI01000009_00343750_00344964 TRIM13 coding upstream 13188 343750 ~ 345290 (+)
CI01000009_00326208_00333904 NA coding upstream 24177 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 35423 318256 ~ 323055 (+)
CI01000009_00300778_00315275 NA coding upstream 43073 300778 ~ 315405 (+)
CI01000009_00260081_00285692 RNF17 coding upstream 72767 259906 ~ 285711 (+)
CI01000009_00363403_00368182 RNASEH2B coding downstream 4697 363403 ~ 368216 (+)
CI01000009_00378726_00379550 NA coding downstream 20020 378726 ~ 379804 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 182063 540769 ~ 545997 (+)
CI01000009_00547369_00551459 NA coding downstream 188663 547369 ~ 552216 (+)
CI01000009_00603498_00605392 NA coding downstream 244522 603228 ~ 605392 (+)
G50662 NA non-coding upstream 22517 335039 ~ 335961 (+)
G50508 NA non-coding upstream 135630 176066 ~ 222848 (+)
G50480 NA non-coding upstream 240478 117563 ~ 118000 (+)
G50473 NA non-coding upstream 259422 97886 ~ 99056 (+)
CI01000009_00094836_00095813 NA non-coding upstream 261248 94371 ~ 97230 (+)
G50666 NA non-coding downstream 21842 380548 ~ 380857 (+)
G50627 NA non-coding downstream 22508 381214 ~ 385408 (+)
G50639 NA non-coding downstream 29492 388198 ~ 388652 (+)
G50633 NA non-coding downstream 30044 388750 ~ 389122 (+)
G50631 NA non-coding downstream 36669 395375 ~ 495961 (+)
G50920 NA other downstream 411135 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1064141 1429873 ~ 1435328 (+)
G51122 NA other downstream 1321440 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1535529 1897343 ~ 1919516 (+)
G51274 NA other downstream 1896393 2255099 ~ 2350486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037212 NA non-coding NC_007120.7 CM002893.2 29662709 ~ 29669618 (+)