RNA id: TCONS_00073248


Basic Information

Item Value
RNA id TCONS_00073248
length 1804
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_037215
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29985010 ~ 30007477 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGATTGACTGTGCAAGGACTACGTTATCTGGTGCTGGACTGGAACTACAGAGACCAGAAGCAAAGGAGGATGGTGGATGTACCAGAGgtgaAAGGAGACTTACTAAAAATGATGGACCAAGGTCTAATCCAGAGCTGCAGAGAAGGAACGGTTAAAATAGGACTCTTCTGAAACTCTTCTGTTATTTAaacctttgtgttcaacatattTGAAAGAGAGATTGTTGTGTACTTTAATGCCATATGTCTGCTACAAGTAAAAAACAAGTTacaagttgttgttgtttttttttataaataaaacaaatctggtTGGATAAAAACATGTCCGTTCTTGTGTACCAGTAGCTCCTCCCACTATAGACAGTTAATACTTTATTCAGCATATTCTGCTTATTGCAATAtcctgttacacacacacacacacacacacacacacacacactccctcattGCAGCTCCTACACATTACAACAGAGCCCAGGAATGAGGAGAGATTCAATTCTGATTGAAAAGAATGTGTGCAGTTCTGGGAAGCTTTCACAGACCGAGCTAAAGactagtctatgtgtgtgtgtgctgtatgtgTAAGGTGGAGTGGCTGCAGTTAATAAGTAACAGTCACTTCAGGTTCAAAGGTTCATTCACACTGGCAACTGGGAAAACTTCCTTCGGTGGCAGTTAAAAAACACCTTCTAATTTGAATCTGTGTTAGTAGTTTTGTAAAGCTGTAGGGAGTCTGAGATGGCCAAGAAGGCGGTAGGTTTAGGGCCACTGTCGAGGCGTCCAGATAACTCGGCGTTTAAACAGCAGAGATTACCAGCCTGGTCTCCATCTCTCACGGCACAGACCGTCCTGCCAATCTTCTACATCCTAGCTGTCGTGTGCCTGCTGCTGGGCATCTGGCTCCTCATCACTGTCCAGAACACACACCAACTGAAGGTGGACTACACCGATGCTGGAACATGTGAACGGTGCTTCGAGCTTCATGCCAACAACACCAGAACGGTCTGCACATGTTCAGTCAACTTCTACGTTCCAAGACCCTTTCCGGGCGACGTGTTCTTCTACTACGGTCTGAGGAACTTTCATCAGAACCTGCGGAGGTACATGGACTCCCGCGATGATGCACAGATGGTGGGGAGGAAGAACAACCTGAAGGCACCGAGTTCATACTGCGCTCCGTTTCATTACGATGCAAACGGGGTACCCATCGCCCCCTGCGGTGCCGTAGCCAACAGCATGTTCAACGacTCATTTACACTGATGTATCATCAAGCTAATGGGGCAGAAGTGCAAGTTCCTCTCTATAGGAAGGGCATTGCTTGGTACACAGACAAAAATGTCAAGTTCCGCAACCCTCCGACCAACAACACATTTTCCCTTCGACAAGCCTTTGAAGGCACGACTCGGCCCTTATACTGGCAGCACTCGGTTTATGAGCTGGATGACACAGACTCCAACAACAATGGTTTCATAAATGACGACCTGATTGTCTGGATGAGAGAGGCAGCCTTCCCTAATTTCAAAAAGCTTTATGGGGTTCTCAATCGTGCTCAAGAGCCTTTCACTGAAGGCCTGCCCGCCGGCAACTACAACATCTCTATAGATTACAATTTTCCTGTTGAGCCCTTCAGAGGTCGAAAGGAGCTGGTGATCTCAATGGTGACCTGGTTTGGTGGGCAGAATTACTTTCTGCCCATTGCGTATCTGGTGACCAGTGGGCTAATCCTGGTGACTGCTGTCGTTCTCACAACAGTGTTTGTCAAATTTGGCAAAAATGGCAAGAACATGGAGGAATAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-146 Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog).

Ensembl:

ensembl_id ENSDART00000188199

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073246 lncRNA upstream 298072 29690678 ~ 29694199 (+) True XLOC_037214
TCONS_00073245 lncRNA upstream 313115 29677820 ~ 29679156 (+) True XLOC_037213
TCONS_00075143 lncRNA upstream 322653 29662709 ~ 29669618 (+) False XLOC_037212
TCONS_00075144 lncRNA upstream 322653 29662742 ~ 29669618 (+) True XLOC_037212
TCONS_00075142 lncRNA upstream 333536 29652755 ~ 29658735 (+) True XLOC_037211
TCONS_00075145 lncRNA downstream 150710 30154784 ~ 30155280 (+) True XLOC_037219
TCONS_00075146 lncRNA downstream 244421 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00075147 lncRNA downstream 260283 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00073262 lncRNA downstream 289999 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00073263 lncRNA downstream 383842 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073243 mRNA upstream 313099 29671553 ~ 29679172 (+) False XLOC_037213
TCONS_00073242 mRNA upstream 339528 29643133 ~ 29652743 (+) False XLOC_037211
TCONS_00073241 mRNA upstream 342441 29643036 ~ 29649830 (+) False XLOC_037211
TCONS_00073236 mRNA upstream 357917 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073250 mRNA downstream 86582 30090656 ~ 30102778 (+) True XLOC_037216
TCONS_00073251 mRNA downstream 104567 30108641 ~ 30111105 (+) True XLOC_037217
TCONS_00073252 mRNA downstream 108349 30112423 ~ 30128758 (+) False XLOC_037218
TCONS_00073253 mRNA downstream 108349 30112423 ~ 30128760 (+) True XLOC_037218
TCONS_00073254 mRNA downstream 200341 30204415 ~ 30206739 (+) False XLOC_037220
TCONS_00073244 other upstream 314019 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 337273 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 357917 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073239 other upstream 365992 29616928 ~ 29626279 (+) True XLOC_037210
TCONS_00073228 other upstream 458626 29520843 ~ 29533645 (+) True XLOC_037207
TCONS_00073260 other downstream 289999 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073279 other downstream 816216 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 1071982 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1491574 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 1562325 31566399 ~ 31572679 (+) True XLOC_037241

Expression Profile

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