RNA id: TCONS_00075143


Basic Information

Item Value
RNA id TCONS_00075143
length 1299
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_037212
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29662709 ~ 29669618 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAAATAAGATAGTATCGAAAGGTTTCAGTTAGACTCGCTGCTGAACacttggtttacagagaatctgCCCTTGCTCAGGCCAACAAGCCAAGGGAACGACAACACAGGAAGCGCcaattttaaatacacagccgtaACATGACACCATAATAACACAATGACAGCTTACAGCATGCTCAAACAAAGCTTGTTGTCTTGTGGCAAACAACCACATGTTAATAAGCAAGAACAGGATCTACTTTGTAGGGCCATTCATGTGGCGCATCTAAACATTACAAAGGTGTGAGGGGCAACCGCTCACACTCATTTACCTTTGTTTTCCACAAAAAAAGGCAAGGGACAGAACTAACCAATgggtttattatttttcaattaaattggGTTTTACGTTTTTAATGCATAGGCTGCAAGTACCGTTAAAGTAAAACGGCATAGTTAATAGAgcaaatgttaaaacggcttgccatatagTGTCCTAAAAAAAACACGATTTCTCCTCGTTCATGTCTTTACGAGAGAAATAAAAAAGAGATTAAGATAAAGGTTTCTTTCCTCTTGTCCTATTCTGAAGGTTCAGTTACTCTATGTTGCATACATGAACTGAACAGAGCGTCGGTCGACGATCCCTGTGGAGACGAAGGAAACGTCCACTCTCCAAGACTAGCCTGACAACAGAGCCTGCGCGCTTGACTACAGCAGGCAGCGAGAGCACTGCGAGCTGCGTCACTCACACCACCATCAGCGTGAAGCTTGATTGGGAGAAGAAAGAAACAGTGCTCCATCTGTCAAATCCGCCCCTTTCTGATTACTGCCGACTGCATCATTCGGATAATGACTTTCAAAATATGGCACTGCTTTCTGGGATGTCCTAGAGCCCCTCCTCCACCTCCAGCATGTCCTTGCTCAGCAGACCTTGGTTGACCTGAATACCTCAGACTTATGGCAGAACAGGGGACCCTGGTTCTTAATCAGCAACACTTGAATGCCCACGCATAGAATGTGTCAGTGCATGTCCTGCTTAGTTATTTTAATGAGTGACAAAAGTGCTAAAAGACGTATTTTCCCACAATGAGAGATGAAGTGAGAGTTGAAGACAAAGGGAGTCATTAAATGTTAAGATGGGTCACATTCTAGCCAACAGCAGACAGATTGACAACAGTTATTAATAAGAtcctgaaaataaagaaaacgaaAACTGAATCTGTGTAAGCAACAATAAAGTGTCAACAGTTCACAAGTATGCTGAAATGCTTACACTAATTTATTGACCTTATGTAAACAATGTTTCTATTCCGA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075141 lncRNA upstream 3974 29652566 ~ 29658735 (+) False XLOC_037211
TCONS_00075142 lncRNA upstream 3974 29652755 ~ 29658735 (+) True XLOC_037211
TCONS_00075140 lncRNA upstream 158934 29500107 ~ 29503775 (+) False XLOC_037205
TCONS_00074912 lncRNA upstream 158934 29500302 ~ 29503775 (+) False XLOC_037205
TCONS_00074911 lncRNA upstream 158934 29500302 ~ 29503775 (+) False XLOC_037205
TCONS_00073245 lncRNA downstream 8202 29677820 ~ 29679156 (+) True XLOC_037213
TCONS_00073246 lncRNA downstream 21060 29690678 ~ 29694199 (+) True XLOC_037214
TCONS_00075145 lncRNA downstream 485166 30154784 ~ 30155280 (+) True XLOC_037219
TCONS_00075146 lncRNA downstream 578877 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00075147 lncRNA downstream 594739 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00073242 mRNA upstream 9966 29643133 ~ 29652743 (+) False XLOC_037211
TCONS_00073241 mRNA upstream 12879 29643036 ~ 29649830 (+) False XLOC_037211
TCONS_00073236 mRNA upstream 28355 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073238 mRNA upstream 32226 29616898 ~ 29630483 (+) False XLOC_037210
TCONS_00073235 mRNA upstream 53733 29603649 ~ 29608976 (+) True XLOC_037209
TCONS_00073243 mRNA downstream 1935 29671553 ~ 29679172 (+) False XLOC_037213
TCONS_00073247 mRNA downstream 315392 29985010 ~ 29994138 (+) False XLOC_037215
TCONS_00073248 mRNA downstream 322653 29992271 ~ 30004074 (+) False XLOC_037215
TCONS_00073249 mRNA downstream 324821 29994439 ~ 30007477 (+) True XLOC_037215
TCONS_00073250 mRNA downstream 421038 30090656 ~ 30102778 (+) True XLOC_037216
TCONS_00073240 other upstream 7711 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 28355 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073239 other upstream 36430 29616928 ~ 29626279 (+) True XLOC_037210
TCONS_00073227 other upstream 127256 29520785 ~ 29535453 (+) False XLOC_037207
TCONS_00073228 other upstream 129064 29520843 ~ 29533645 (+) True XLOC_037207
TCONS_00073244 other downstream 7284 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073260 other downstream 624455 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073279 other downstream 1150672 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 1406438 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1826030 31495648 ~ 31495765 (+) True XLOC_037239

Expression Profile

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