RNA id: TCONS_00074912



Basic Information


Item Value
RNA id TCONS_00074912
length 1169
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_037205
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29500107 ~ 29503775 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


aaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggagtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataata

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00073222 lncRNA upstream 25323 29473442 ~ 29474979 (+) True XLOC_037203
TCONS_00073214 lncRNA upstream 450178 29040386 ~ 29050124 (+) False XLOC_037201
TCONS_00075139 lncRNA upstream 466330 29032416 ~ 29033972 (+) True XLOC_037200
TCONS_00075138 lncRNA upstream 681941 28816215 ~ 28818361 (+) True XLOC_037199
TCONS_00075137 lncRNA upstream 759378 28722058 ~ 28740924 (+) False XLOC_037198
TCONS_00075141 lncRNA downstream 148791 29652566 ~ 29658735 (+) False XLOC_037211
TCONS_00075142 lncRNA downstream 148980 29652755 ~ 29658735 (+) True XLOC_037211
TCONS_00075143 lncRNA downstream 158934 29662709 ~ 29669618 (+) False XLOC_037212
TCONS_00075144 lncRNA downstream 158967 29662742 ~ 29669618 (+) True XLOC_037212
TCONS_00073245 lncRNA downstream 174045 29677820 ~ 29679156 (+) True XLOC_037213
TCONS_00073218 mRNA upstream 17888 29430432 ~ 29482414 (+) False XLOC_037203
TCONS_00073220 mRNA upstream 18605 29431763 ~ 29481697 (+) False XLOC_037203
TCONS_00073219 mRNA upstream 18605 29431763 ~ 29481697 (+) False XLOC_037203
TCONS_00073216 mRNA upstream 172293 29323163 ~ 29328009 (+) False XLOC_037202
TCONS_00073217 mRNA upstream 173665 29325794 ~ 29326637 (+) True XLOC_037202
TCONS_00073224 mRNA downstream 16921 29520696 ~ 29527021 (+) False XLOC_037207
TCONS_00073229 mRNA downstream 44420 29548195 ~ 29570868 (+) False XLOC_037208
TCONS_00073230 mRNA downstream 44855 29548630 ~ 29571228 (+) True XLOC_037208
TCONS_00073231 mRNA downstream 77887 29581662 ~ 29616590 (+) False XLOC_037209
TCONS_00073233 mRNA downstream 82168 29585943 ~ 29616590 (+) False XLOC_037209
TCONS_00073221 other upstream 57693 29442493 ~ 29442609 (+) True XLOC_037204
TCONS_00073213 other upstream 759378 28722076 ~ 28740924 (+) True XLOC_037198
TCONS_00073206 other upstream 867802 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073196 other upstream 1561884 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073194 other upstream 1659762 27837786 ~ 27840540 (+) True XLOC_037184
TCONS_00073223 other downstream 14464 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 16967 29520742 ~ 29527021 (+) False XLOC_037207
TCONS_00073226 other downstream 17010 29520785 ~ 29527017 (+) False XLOC_037207
TCONS_00073227 other downstream 17010 29520785 ~ 29535453 (+) False XLOC_037207
TCONS_00073228 other downstream 17068 29520843 ~ 29533645 (+) True XLOC_037207

Expression Profile


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