RNA id: TCONS_00073220


Basic Information

Item Value
RNA id TCONS_00073220
length 4593
RNA type mRNA
GC content 0.47
exon number 40
gene id XLOC_037203
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29430432 ~ 29482414 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caTCCAATCATGAGgctggtttttgttgtgctggtttttCTGAGGGTCCAGCATGTGAACTCAGCATCTAAGGGAATCGTCGCCAGTCTTCAAGCCAAATGGGCTGCGACCCCTCTCCTACTGGAAACAAGTGAATTCATCAGGGAAGATGGAGACGAGAAATTCTGGCAGTTTGTCGATACTGTGAAGGAGTTAACTGTTTACAAATCTGGAGAGTCTGTCCGCTCCTATTATAACCTGATCCTCAAGAAGGCTGGCCAGTTTTTGACGGATCTTCAGGTCAACTTGCTGaagctctctctgtctctcaggaCTTACTCTCCAGCTGTACATGCTCTCCAACAAATAGCAAGCGATGAACCTCCTCCTGAAGGCTGCTCTGCTTTTGTGGTTGTTCATGGTCAAAATGCCTGCAGCACCAAGGATATGAAGAAGCTCTTGAAAACAGCCGCAGACAGGCCAAGACCTTACCTATACAAGTCTGACCACCAATACCCAGGAGTCAATGGGACAGATGTGCCTGTAGCTATTCTTTATGCTGAAATTGGCACTAAGGAGTTCAGTACTTTTCATAAGGTTCTGTCTGAGCGAGCACAGGAGGGCAAACTTATCTATGTGctgcgacattttgtgtctGAGCCGAAAAATGAAAGGATGCTGCTCTCTGGATATGGTGTGGAACTAGCAATTAAAAGTACTGAGTACAAAGCTGTTGATGACACAAAGGTTAAAGAATCCAAATCAGCTGGCACTGATAATGAGGATGAAAATGATGAAGTCCAAGGGTTTCTGTTTGGGAAATTGAAAAAGTCTCATCCGGAGCTTCAGGAGGAGCTAGGAGAGCTGAGAAAGCATCTCCTGGAGAGCACCAATGACATGACTCCTCTCAAAGTGTGGGAGCTTCAAGACCTCAGTTTCCAGGCGGCATCTCGGATCATGACTGTGCCAAAGTTTGATTCTCTCAAATTGATGCAAGAGCTCAGCCAAAATTTCCCCAGCAgagccagATCACTGACAAGAGTGGCTGTAAACCAAGACATGAAGAAGGAAATAGAAGACAACCAAAAGAGGCTCAGTGAGTCGATGGGCGTCCATCCTGGAGATGCCAGTCTTTACATTAATGGAATACATGTTGACCTGGACATTCATAACCCTTTCAGCATTCTGGACATTCTCAGAAGCGAGGCTAAGATTCTTGAAGGTCTTCATAATCTTGGCGTCAAAGGAAGCAGCATTAGTAAGTTCCTGCATCTACCATCATCAACCACTGTAGAGGACAGCTACGCTCTGGACATCCGACACTCATCCATTATGTGGGTTAATGATATTGAGAAGGACTCCATGTATCGTCACTGGCCCTCGAGTCTCCAGGAGCTCCTCAGAGCAACATTTCCCGGTGTTATTCGACAAATACGCCGTAACTTCTATAACCTGGTTCTGTTTCTTGACCCAGCACAGGAAGAGAGTATTGAGCTGGTGAAGTTAGCAGAGCTCTTTTACAAACACAACATTCCCCTCAGGATTGGGTTTGTACTGGTTGTCAATTCTGATGATGAAGTGGATGGACTTTCGGATGCTGGTGTTGCTCTCTTCAGACTGTTAAATTACATTTCAGAGGAGTATGACGAAGCTCAGGCTTTTACATCCATGGTGTCAATTTTTAATAGAATTGGGGTAGGGAAGACACTCTCTGTGGACACAATAAAAGCATATCTGAAAAAGAAATTTCCAAAAGCAAATGCTGCCAGAATTCTTGGAGTGGATTCAAGCTATGATGACAACAGGAAGGCTGGCGGAACGTTTTACAAAAAGAGTGGTTTAGGTGCTTTACCAGTGGGTCTGTTCAATGGTGTCCCACTCAGTAGTGAGGAGATGgacccggaggagctggagacAGTTCTGCTGCAGAAAATCATGGAAACTACAAACTTCTTCCAGAGATCTGTCTTCATGGGTCAGATCACAGAGAGTGTTGATGTGGTGGACTTCCTGATGGAGCAGGCCAATGTTGTCCCACGTATTAACCCTTTGATTCTGAGCTCTGACAGGCGGTATCTTGATTTTACTGCCTCACCAGttgcTGATGACTGGGATGACTCGGCTATGTTTTTATACTTGGACTCCAGAGACAAAACAGGAGTTATCTCTAAGAGAATGAAGTATTTCATCCGAGAGGAGGCGGAGGTGTTGTATGGAGTGACCATGTGGATTGTAGCAGATATTGAACAACCCTCTGGGAGGCAGTTGCTCCGGAATGCCTTGAAACATATGAAATCCAGCAGTTCCAGCTGTCGTGTCGGGGTGATCAATAACCCCAATAGAAAGCCCACTGAGGAGAACAGCGCTCTGTACAGAGCCGTCTGGGCTTCTCTCCTCACTCAAAGCAGCAAGAACACGCTCGACTTCACcctaaaactcctcaaagaagaaAATGTTGAACTCCTCAAACAAGGCACCAAGATTAAGCACTTACTTAAACAGGGTATGGACCATGATGCCTTTGAGAAGAAGTTCAACACGATGGAGGTGGATTTCCTGCACAGCCAGCAGAAGTACTGTAGGGAAGTGTTAAAGCTCCAAGCAGGACAAAGAGCTGTGGTCAGCAACGGCAGGATCCTAGGCCTGCTGGACGACAAAGACGACAACGAAGAAGTGTTCAGTGTGGAAGATTTCCATCTGCTTGAAATGATCACACTTCGCACCTCAGCAGAAAAGATTAAATCCAAGATCAAGCAAATGAACTTCAGTGCCCAAAAGGCCAGTGATCTAATAATGAAAGTGGATGCTCTCCTCTCTTCATCGCCTAAAGGAGAAGCCAGAAAAGATGTCAAATTTCTGAAGGACAAACACAGTGTTCTTCATCTGGCACAAAGAGAGGATGAGGTCTTCTATGACGTTGTTGCTATTGTGGATCCTCTCACCAGAGAAGCACAGAAGTTGGCTCCTTTATTGGTTgtgcTTGGTCAAGTGGTCAATATGAAAGTGCAGGTGTTCATGAACTGTCGAGCCAAGCTGTCTGAGATGCCCCTGAAGAGCTTTTATCAGTATGTTTTGGAGCCGGATGTTTCCTTCTTTGGCAACAACTCCCTTTCCCCCGGCCCTATGGCTCGCTTTACTGAAATCCCAGAATCCCCTCTGCTCACTCTTAATATGATCACCCCAGAGAGCTGGATGGTGGAGGCCGTCAGAAGCCCATATGATCTAGATAACATCCACCTACAAGAGGTCAGCGGTGTGGTGAATGCAGAGTATGAGCTGGAGTATCTGCTGCTGGAGGGCCACTGTTTTGACCTGTCCACAGGTCAGCCTCCCAGAGGGCTTCAGTTCACACTGGGCATGAGACAGGAGCCTCTCATGCATGACACCATCGTCATGGCCAACCTGGGCTATTTCCAGTTGAAAGCAAACCCTGGTGCCTGGATCCTGAGACTGCGCGAGGGCCGCTCTGAGGACATCTATCAGATACAGGCgcatGATGGTACAGACTCTCCTGTCGATGCTGGAGATGTCATTGTGGTGCTCAACAGCTTCCACAGCAAGATCATCAAAGTTAGAGTCCAGAAAAGACCTGACAAACTCAATGAGGATCTTCTAAGTGAGGGAGCTGAATCCAAAGGCCTGTGGGACTCCATAACCAGTGTGTGGAGTTCTTTGGAAAAGAGCTTCTCTGGTGGCCCGAGTGTGGATGAGGGCAACAATAAGAAAGATGTTCTTAACATTTTCTCTGTGGCCTCTGGACATTTATATGAGCGATTCCTGAGAATAATGATGCTGTCTGTCCTCCGACACACTACAACCCCTGTCAAGTTCTGGTTCCTCAAAAACTACCTCTCCCCCTCTTTCAAGgAAACCATCTCGCACATGGCGAAGGCATATGGTTTCCAGTATGAGCTGGTTCAGTATAAATGGCCCCGGTGGCTTCACCAGCAGACAGAAAAGCAGCGCATCATCTGGGGCTACAAGATCCTCTTCCTGGATGTGCTCTTCCCCCTTGCCGTGGACAAGATTATCTTTGTTGATGCTGATCAGATTGTCAGGGCAGATTTGAAGGAGCTGAGGGATCTGGATCTTGAAGGCGCCCCCTATGGGTACACGCCGTTCTGTGACAGCCGAAAAGAGATGGAAGGATATCGTTTCTGGAAGACTGGCTACTGGGCCTCCCATCTTGGACACAGGAGATACCATATCAGTGCACTATATGTGGTGGACTTGAAGAAGTTCAGAAAGATCGCAGCTGGAGACCGACTGAGAGGACAGTATCAAGCCTTAAGCCAAGATCCCAACAGCCTGTCCAACCTTGACCAGGACCTTCCCAACAACATGATCCATCAAGTTGCCATCAAGTCATTGCCCCAGGAGTGGCTGTGGTGCGAGACCTGGTGTGACGACCACTCCAAAACTACAGCCAAGACCATAGATCTGTGTAATAACCCAAGGACCAAAGAGCCCAAGCTGAGTGCAGCGGTGAGGATTGTTTCAGAGTGGACGGAATATGACAATGAGATAAAACGCTTTCTGAAAGAAGCGAAAAAAGAAATTACCCAGAGTAAAGCATCCACACAGCACACAGGCAATCGACGTGACGAACTTTAG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0071712 ER-associated misfolded protein catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0003980 UDP-glucose molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-21 Predicted to enable UDP-glucose:glycoprotein glucosyltransferase activity and unfolded protein binding activity. Predicted to be involved in ER-associated misfolded protein catabolic process and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human UGGT2 (UDP-glucose glycoprotein glucosyltransferase 2).

Ensembl:

ensembl_id ENSDART00000186095

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073214 lncRNA upstream 381639 29040386 ~ 29050124 (+) False XLOC_037201
TCONS_00075139 lncRNA upstream 397791 29032416 ~ 29033972 (+) True XLOC_037200
TCONS_00075138 lncRNA upstream 613402 28816215 ~ 28818361 (+) True XLOC_037199
TCONS_00075137 lncRNA upstream 690839 28722058 ~ 28740924 (+) False XLOC_037198
TCONS_00075136 lncRNA upstream 703622 28722058 ~ 28728141 (+) False XLOC_037198
TCONS_00074910 lncRNA downstream 18410 29500107 ~ 29500865 (+) False XLOC_037205
TCONS_00075140 lncRNA downstream 18410 29500107 ~ 29503775 (+) False XLOC_037205
TCONS_00074912 lncRNA downstream 18605 29500302 ~ 29503775 (+) False XLOC_037205
TCONS_00074911 lncRNA downstream 18605 29500302 ~ 29503775 (+) False XLOC_037205
TCONS_00074913 lncRNA downstream 19922 29501619 ~ 29503747 (+) True XLOC_037205
TCONS_00073216 mRNA upstream 103754 29323163 ~ 29328009 (+) False XLOC_037202
TCONS_00073217 mRNA upstream 105126 29325794 ~ 29326637 (+) True XLOC_037202
TCONS_00073215 mRNA upstream 373248 29040425 ~ 29058515 (+) True XLOC_037201
TCONS_00073210 mRNA upstream 734764 28693592 ~ 28696999 (+) False XLOC_037197
TCONS_00073207 mRNA upstream 739791 28688574 ~ 28691972 (+) False XLOC_037196
TCONS_00073224 mRNA downstream 38999 29520696 ~ 29527021 (+) False XLOC_037207
TCONS_00073229 mRNA downstream 66498 29548195 ~ 29570868 (+) False XLOC_037208
TCONS_00073230 mRNA downstream 66933 29548630 ~ 29571228 (+) True XLOC_037208
TCONS_00073231 mRNA downstream 99965 29581662 ~ 29616590 (+) False XLOC_037209
TCONS_00073233 mRNA downstream 104246 29585943 ~ 29616590 (+) False XLOC_037209
TCONS_00073213 other upstream 690839 28722076 ~ 28740924 (+) True XLOC_037198
TCONS_00073206 other upstream 799263 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073196 other upstream 1493345 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073193 other upstream 1591223 27837403 ~ 27840540 (+) False XLOC_037184
TCONS_00073223 other downstream 36542 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 39045 29520742 ~ 29527021 (+) False XLOC_037207
TCONS_00073226 other downstream 39088 29520785 ~ 29527017 (+) False XLOC_037207
TCONS_00073227 other downstream 39088 29520785 ~ 29535453 (+) False XLOC_037207
TCONS_00073228 other downstream 39146 29520843 ~ 29533645 (+) True XLOC_037207

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_00179808_00221387.mRNA True 4578 mRNA 0.47 38 CI01000009 179808 ~ 221387 (+)