RNA id: TCONS_00073213


Basic Information

Item Value
RNA id TCONS_00073213
length 458
RNA type processed_transcript
GC content 0.42
exon number 5
gene id XLOC_037198
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 28721987 ~ 28819753 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACAGCTCGTCGAAGAATGCTTGGAAAAGGTGGATGTCTGTTTGTTCAGCGGCATCCTGAGGATGCATAAGAGTACATACTGCTGTGTGAGTGACTGATGTGAGCCACATGAGCCTCAGAGCAGAATATTCATGACCCTTCTAAATAAGCGCCCTCACCGcctgatgagggacaataatgttaataaaatcaCAGGAAACacggagctgctgctgcttcacgtcagaaatCAGCTCCACCAATTTGAGGATTGCAAGAACTGAAGTATGCAAGCTATATGTAGAAATCACATCATTTTACTGTACCTCTACCCAGACCATCAGTACACCCAGgttttgtcctCCTTACTGCTCAGGGCTCCAGACTAACTGAGAACAGAGGTCAcactaaaatgttcattttaatctAATTCAATTTGAAGGGTTTACATGTTTATTCAATAAattgtttacttta

Function

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0044773 mitotic DNA damage checkpoint biological_process
GO:0044774 mitotic DNA integrity checkpoint biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000147836

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073209 lncRNA upstream 25077 28693592 ~ 28696999 (+) True XLOC_037197
TCONS_00075134 lncRNA upstream 115365 28602139 ~ 28606711 (+) True XLOC_037194
TCONS_00075132 lncRNA upstream 131768 28588857 ~ 28590308 (+) False XLOC_037193
TCONS_00075133 lncRNA upstream 131768 28588890 ~ 28590308 (+) True XLOC_037193
TCONS_00073203 lncRNA upstream 318930 28399324 ~ 28403146 (+) True XLOC_037192
TCONS_00075138 lncRNA downstream 75291 28816215 ~ 28818361 (+) True XLOC_037199
TCONS_00075139 lncRNA downstream 291492 29032416 ~ 29033972 (+) True XLOC_037200
TCONS_00073214 lncRNA downstream 299462 29040386 ~ 29050124 (+) False XLOC_037201
TCONS_00073222 lncRNA downstream 732518 29473442 ~ 29474979 (+) True XLOC_037203
TCONS_00074910 lncRNA downstream 759183 29500107 ~ 29500865 (+) False XLOC_037205
TCONS_00073210 mRNA upstream 25077 28693592 ~ 28696999 (+) False XLOC_037197
TCONS_00073207 mRNA upstream 30104 28688574 ~ 28691972 (+) False XLOC_037196
TCONS_00073208 mRNA upstream 30106 28689754 ~ 28691970 (+) True XLOC_037196
TCONS_00073205 mRNA upstream 115362 28598607 ~ 28606714 (+) False XLOC_037194
TCONS_00073204 mRNA upstream 117625 28598577 ~ 28604451 (+) False XLOC_037194
TCONS_00073215 mRNA downstream 299501 29040425 ~ 29058515 (+) True XLOC_037201
TCONS_00073216 mRNA downstream 582239 29323163 ~ 29328009 (+) False XLOC_037202
TCONS_00073217 mRNA downstream 584870 29325794 ~ 29326637 (+) True XLOC_037202
TCONS_00073218 mRNA downstream 689508 29430432 ~ 29482414 (+) False XLOC_037203
TCONS_00073220 mRNA downstream 690839 29431763 ~ 29481697 (+) False XLOC_037203
TCONS_00073206 other upstream 89576 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073196 other upstream 783658 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073191 other upstream 877448 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073221 other downstream 701569 29442493 ~ 29442609 (+) True XLOC_037204
TCONS_00073223 other downstream 777315 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 779818 29520742 ~ 29527021 (+) False XLOC_037207
TCONS_00073226 other downstream 779861 29520785 ~ 29527017 (+) False XLOC_037207
TCONS_00073227 other downstream 779861 29520785 ~ 29535453 (+) False XLOC_037207

Expression Profile

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