RNA id: TCONS_00073246


Basic Information

Item Value
RNA id TCONS_00073246
length 1601
lncRNA type lincRNA
GC content 0.46
exon number 2
gene id XLOC_037214
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29690678 ~ 29694199 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctattcattatttaattttggagaacgccATTTGGAGACCATCcttcatgttcagttgtggcctgtatttatttttaatctatgtGAGTGTCGTagaggtgtcagaaagtttaacctggtgccatcaaatcaatgtgctgcatctgacgctattacTGTGTATAACTGAAACACCCAAGCAGTCacatggctttttatttgcatgttatttttttatgtttattgttaACAATGTTACTATTATCTACAATTTTTCCTGTAGGTTGTGGATAAAACATGGTAATTTGAATagtttagatttttggaaatcattgTCCCCTGACCCCCACTTTAGGAACCACTGCTTTACAATATAGTATATCTGTTTCAGACTCTTGATTTCAAGTGAATATTCTCTCCATCAGTGACATTACAGAAAGAGGAAACCCAGGGGGAAATCACCATAATTAGTGTCATATGCTTGTGTTTAGGAATACAGTACCAATAGAAAACTATGACTATAATAGCAAACTAAAATTTAAGGTGAACTCAATGACTCATTTATGCCTATTGTAATGAATATGGGGCACATATTAATGCAGCTGAATATAATTGTGTTTCTGAATTTACATGGAAGACAGAATCTAACTCGGTTTCACTTCCTCCTTGAGTAAAGCATAAAAGTGAGGATCGATAGCACAAGTTTCACTGCAAGCACTGAGAGAGAGAAAACCAGACCCCGAAACACCTCTGATCAACATCCAGAGACTCCTGTAGGAAAACGATGCTGTGTGAAGGAAAGCTCTGGAGTCTGGCTTTTGAAGCTGAAGCCGAGTGTGTAAATCCTCCTTCATGCACCACAGTCACAGAGCCTTCCTCAACTTCACCAAATAATCCCCTCTCAGCTCAAATCCCCGTCCACTCAGCTCCAGAGGTCCATGCTAATATAACCCAGATGAAAACCCAGAGCTACCCTCACCCTTCCTCTATGGCAGGACATGGTGTGGATATCCCCAGGCATGTGGACACCCCTGAAACAGAAGCATTTTTGGTGCCTTCGAGCTGCCACAGCATTTGCCAGCATTACAGCGATTTACACATAGCAGGCGGTCAGGTGTTGCCGCTCAGCCCCCATGCAGGAGACATACAGGGCCATCACAGCCAGGATCCCCAGCCTGGACCCTTTCTTGTGTCTGAAGATGTTCCCTCACCCTCCCTCTTACCTCCTCTGGTCCACGAGTTCAGGAGCTCGAGGCGATGGAAGGAAGAAAGCGGGCGTGAGCGTCCCTCTCTCCTGCAGTTCAGCCGGCCGCTCTCCAACTCTCAACTTAACGGCTATCTTGAGCAGAAGCTTCTGGAGCTGTACAGACAGTACCTGACTGAGGGACCGGCTGTTAGCAGGCCCGTCATGGCCTCTGAGCTTCTGCAGACCAGCCTGGACCAGATGACCCTCCAGCTGAGCCGAGAGCAGAACATGGAGACGGCAAGGGCAAAAGACATGCTGCTCAGCTGCCTGCTCAGAGTCACCAGCACATACCAGTCCAGCGAGATCAGCACTCCTCTACTGCAGATCTCCACTGAGACGCAATGAGCTAGACAGATAAAAGGAGAAGACTGACTG

Function

GO:

id name namespace
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031981 nuclear lumen cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140017

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073245 lncRNA upstream 11522 29677820 ~ 29679156 (+) True XLOC_037213
TCONS_00075143 lncRNA upstream 21060 29662709 ~ 29669618 (+) False XLOC_037212
TCONS_00075144 lncRNA upstream 21060 29662742 ~ 29669618 (+) True XLOC_037212
TCONS_00075141 lncRNA upstream 31943 29652566 ~ 29658735 (+) False XLOC_037211
TCONS_00075142 lncRNA upstream 31943 29652755 ~ 29658735 (+) True XLOC_037211
TCONS_00075145 lncRNA downstream 460585 30154784 ~ 30155280 (+) True XLOC_037219
TCONS_00075146 lncRNA downstream 554296 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00075147 lncRNA downstream 570158 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00073262 lncRNA downstream 599874 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00073263 lncRNA downstream 693717 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073243 mRNA upstream 11506 29671553 ~ 29679172 (+) False XLOC_037213
TCONS_00073242 mRNA upstream 37935 29643133 ~ 29652743 (+) False XLOC_037211
TCONS_00073241 mRNA upstream 40848 29643036 ~ 29649830 (+) False XLOC_037211
TCONS_00073236 mRNA upstream 56324 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073238 mRNA upstream 60195 29616898 ~ 29630483 (+) False XLOC_037210
TCONS_00073247 mRNA downstream 290811 29985010 ~ 29994138 (+) False XLOC_037215
TCONS_00073248 mRNA downstream 298072 29992271 ~ 30004074 (+) False XLOC_037215
TCONS_00073249 mRNA downstream 300240 29994439 ~ 30007477 (+) True XLOC_037215
TCONS_00073250 mRNA downstream 396457 30090656 ~ 30102778 (+) True XLOC_037216
TCONS_00073251 mRNA downstream 414442 30108641 ~ 30111105 (+) True XLOC_037217
TCONS_00073244 other upstream 12426 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 35680 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 56324 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073239 other upstream 64399 29616928 ~ 29626279 (+) True XLOC_037210
TCONS_00073227 other upstream 155225 29520785 ~ 29535453 (+) False XLOC_037207
TCONS_00073260 other downstream 599874 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073279 other downstream 1126091 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 1381857 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1801449 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 1872200 31566399 ~ 31572679 (+) True XLOC_037241

Expression Profile

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