RNA id: TCONS_00073284


Basic Information

Item Value
RNA id TCONS_00073284
length 586
RNA type mRNA
GC content 0.54
exon number 4
gene id XLOC_037235
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31075896 ~ 31259145 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGAACTGACTGCTGAGCTGCCGCCACGGAGCTTGGTCCCAAACTATACTGTACTTCACACTCGATTTATTCTCCAGATGGCAAGACTACGCAGCCCTGCCGGGAGGGGCCACCTCTTCCACTGAAGTGTGAAAGTGGACGGATGTTGTTTTCGGATCCTCTGTGATCAGCTCCGAGCTCCCTCAAACCACCCGGCACCgatGCAGCTCGAGAAACCATCCCAAAGATGCTGGCAGAGCTGGATCTGGGACGTACGGAGAAGTGTGTACGGGTGAACTCTGTGTCCAGTGGCCTGGCTGAAGCCGACATGGAGGTTATTCTGCAGTCGGACGTTCTGCCCACAGCTCTCATGCTGCCAAAGGTGGAGGACACAGGAGAGGTGCAGTGGTTTGTTGACAGGTTTCAGCAGTACTTAAAAGGCAGAGAGCTTGAGGAACCCATCCGCTTGGTCACCTTTGTGGAAACTGCTGTGGGTCTGCTGAATTTTAAGGCAGTGTGTGAAGCACTTCGAGATCTTGGGCCAAAGGCAGGTTTTCATCATGACGGAGTTGTCTTCGGGTCTGATGACTTCTGTGCCAGCATAGG

Function

GO:

id name namespace
GO:0106064 regulation of cobalamin metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0047777 (S)-citramalyl-CoA lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030516-6 Predicted to enable (S)-citramalyl-CoA lyase activity. Predicted to be involved in regulation of cobalamin metabolic process. Is expressed in brain. Orthologous to human CLYBL (citramalyl-CoA lyase).

Ensembl:

ensembl_id ENSDART00000145573

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075148 lncRNA upstream 65798 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00073277 lncRNA upstream 505120 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00073266 lncRNA upstream 797445 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073263 lncRNA upstream 829281 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073262 lncRNA upstream 913894 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00075149 lncRNA downstream 16197 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00075150 lncRNA downstream 16686 31265363 ~ 31269143 (+) True XLOC_037236
TCONS_00075151 lncRNA downstream 31724 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00074916 lncRNA downstream 79764 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00074915 lncRNA downstream 79764 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00073280 mRNA upstream 159322 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073278 mRNA upstream 438134 30720048 ~ 30783892 (+) True XLOC_037233
TCONS_00073274 mRNA upstream 582664 30585600 ~ 30639362 (+) False XLOC_037231
TCONS_00073285 mRNA downstream 33484 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073289 mRNA downstream 285924 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073290 mRNA downstream 307366 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073292 mRNA downstream 503951 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073293 mRNA downstream 546666 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073282 other upstream 55624 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 206700 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073260 other upstream 917696 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 1543774 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 1567028 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073288 other downstream 246971 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 317722 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 744634 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073304 other downstream 851526 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073307 other downstream 935378 32184055 ~ 32187252 (+) True XLOC_037247

Expression Profile

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