RNA id: TCONS_00073278


Basic Information

Item Value
RNA id TCONS_00073278
length 1826
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_037233
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30720048 ~ 30783892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCATTTCCTGAGAACTGCCCTGAGCAGCTGAGAGGAGCAGAGAGGGGAGGGagtcacagagagagagagagagagagacagacagagaggacTGTATAAGGAAGACAGTTTCTGTCGCTCTGCAGCTCCTGGTCAGACGCCATCAATAACAGGATGTTAATGCTAGACGGAATGCCTGCAGTCCGAGTCAAAGCAGAACCTCTGGAATCTGAGAGAGGGTCACCCAAAGTGCACGGCTATCCAGATATGGAGGCAGTGCCGCTTCTGCTCAGCAAAGTAAAGGCAGAACCTCCAGAAGACCTGCTCTCATCTGATCAATTCCAGACCCAGACGGAGCCTGTGGACCTGTCCATCAACAAGACACGGACGTCATCTCCTTTATCCAACAACTCACCCGTTACCTCAGCCTTTTCTCCATCctcttcttcatcatcttcatcctcacCTTCCGTCATTGCCTCCGTATCATCTGGAATGCCCTCTGTGTTGACATCCGGGTCCTTAGTGGGCTCTTCTCATGGAGTTAGGGGCCAGCAGTTTTTGCATATCATCCACCCCGTCCCCCCTTCAAGCCCCAGTAAATTGCCCAGCCAGGTGCACCGTATCCCTGTGGTGGTGCAGTCGCTGCCCCTCATGTACACCACATCCGTACGTTCCCCGTCCACCCTCAGCTCCACCATCATGTTACCTCTCCTGGATGAGGCCAGGTGCCAGGATAAAGCACAAACAGACCCCAATGGCCTGTCGCCAAGACAAATCAAAAGTGACAGTGATGATGACGACCTGCCAAACGTGACCTTGGACAGTGTTAATGAAACAGGATCCACGGCGCTGTCTATAGCACGAGCAGTGCAGGATTCCATGTCACCATTCAGTATTGAGAGCATTCGACGGCCACCGCCACCTGAATCTCCAGACTCAAAGAAAAGACGCATCCATCGCTGCGACTTTGCAGGCTGTAATAAAGTTTATACCAAGAGCTCCCATTTAAAGGCACACCGGAGGACACACACAGGTGAGAAGCCATACAAGTGCACCTGGGACGGCTGCACATGGAAGTTCGCCCGCTCGGACGAGTTAACACGGCATTACCGCAAACACACTGGGGTCAAACCCTTTAAGTGCGGAGACTGCGACCGAAGCTTCTCTCGCTCAGACCATCTGGCCCTGCATCGTCGCAGACACATGCTGgtttgaaaacacacacatgcatacacacacacacacacaggagagctGGATCTCCCTCAATACTGTTCAGCTGGGCTGGACACACAAATGGCAATCCCTGCTCCTCAGAAACATCCAGAGAGGATAAAAGAGCAAGCAGAAGACGGAGGATTACAATGCTTTCCCCACAATTGCAAAGCTAAACAGGGTCCATTCAGGAAGGGATGAGGTTCAGCTACGCATTTTGGAGTCTACGATGTGGATCGTTTCATTTTTGTTCAGAGGAATATTTCAATCGGGCAAATGCTTTCTTTCctgttttgtctttttctttccGAATCATACTTTCATTCTGTTTAAACATGGCTGCTTCTTACTCAACATCTACAATATGAAGAAATGCAGCGTGGAATGGCTTCGTTAAACATTTGCTTGAACATCTTTTTTTTGTGGAACATCAAGAGCCGGACACGTCTGAGGAAGATGGTAGTTGTTTTTCTGATGACGGAGACTTTTGATTCCAGAGATTGCCGTTTACAGGTCAACACACCAGCGAATGAGATTACACAACAACCAACCTATTGAAATGATCTTTCGTTTCCTCCTGCTGTTGATTTTGAACTGATTGATTTTGATAAACCGACAAAAAAATAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-22 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human KLF12 (Kruppel like factor 12).

Ensembl:

ensembl_id ENSDART00000146115

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073277 lncRNA upstream 3142 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00073266 lncRNA upstream 295467 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073263 lncRNA upstream 327303 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073262 lncRNA upstream 411916 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00075147 lncRNA upstream 454625 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00075148 lncRNA downstream 292088 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00075149 lncRNA downstream 480982 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00075150 lncRNA downstream 481471 31265363 ~ 31269143 (+) True XLOC_037236
TCONS_00075151 lncRNA downstream 496509 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00074916 lncRNA downstream 544549 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00073274 mRNA upstream 80686 30585600 ~ 30639362 (+) False XLOC_037231
TCONS_00073276 mRNA upstream 81012 30633184 ~ 30639036 (+) True XLOC_037231
TCONS_00073273 mRNA upstream 86682 30585552 ~ 30633366 (+) False XLOC_037231
TCONS_00073272 mRNA upstream 86682 30585552 ~ 30633366 (+) False XLOC_037231
TCONS_00073275 mRNA upstream 86794 30626416 ~ 30633254 (+) False XLOC_037231
TCONS_00073280 mRNA downstream 106657 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073281 mRNA downstream 292004 31075896 ~ 31258326 (+) False XLOC_037235
TCONS_00073283 mRNA downstream 383819 31167711 ~ 31259145 (+) False XLOC_037235
TCONS_00073284 mRNA downstream 438134 31222026 ~ 31248677 (+) True XLOC_037235
TCONS_00073285 mRNA downstream 498269 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073260 other upstream 415718 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 1041796 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 1065050 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 1085694 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073279 other downstream 36398 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 292164 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 711756 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 782507 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 1209419 31993311 ~ 31993433 (+) True XLOC_037244

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_01034561_01035452.mRNA True 819 mRNA 0.51 2 CI01000009 1034561 ~ 1035728 (+)
bowfin (Amia calva) AMCG00014568 True 1107 mRNA 0.56 7 CM030128.1 18115011 ~ 18179286 (-)