RNA id: TCONS_00073274


Basic Information

Item Value
RNA id TCONS_00073274
length 4019
RNA type mRNA
GC content 0.52
exon number 20
gene id XLOC_037231
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30585552 ~ 30639362 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAAGAGGTTTGCGCTGTGGTACATGGGCTGGTCGGCTCTGGACAGGCGGACCACGCTACCCATGCTGCCGTGGCTTGTGGCGGAGATCCGGAGGAAAAGTGAGAAGAACGAGTCCGGTCCCACACAGGCCAGGGAAGTTCAGCTGCATCTCTCGCCCCCTCTGATCCGCTGCGTGCCCGCGAGCAGCAGCAACCCGTCCGTCTTCATATTCGAGCACAAAGCACAGTTTATATCCAGGTTTATTCATAACAGCCATGACTTGTCTTATTTTGCCTACCTTATCAGAAGTCAGCCTGAGAACCCAGAGTCTGAGATGGCATGCCATGTGTTTAAAGCATGTGATCCCAACCAGGTGCCTGAGGTTATTAGCAGCATCAGACAGGTGTCCAAAGCAGCTCTTAAGGAGGAAAGCAAGCCCAAGCAAGAAAGCGATGAGTCTTTCTACAACTCCCAAAAGTTTGAAGTGCTTTACTGTGGAAAGGTGACCGTCAACCACAAGAAAGCCCCGTCCACTTTGATCGATGACTGCATTGACAAATTTCGCCAACATGAGATTGAACGTAAACGCTTGCGGCTACTCAATGGGCAGCGGAACTCCACTGAAGCCCCTGTGGAGTTTATTATGGGCGAGGATCCGTTAAGTTCATCCCTCTGTGAAGTGGATGAACCAGAATCTGAGCCCAGCTTGACTGAGGAAGAGCTGTCTGAGGTGGGCAATGGGAAACTGGACCTGGCGAACTCCTCCAGTACGGGCAGCCTGCGAGGGGCCTTTCCTGAGTGTATCTTGGAGGACTCTGGGTTTGGGGAGCAGCAGGAGATTCGGACGCGGTGTAACAGCCTGGCAGGTGGCCTGCAGAAAAGACCCAGAGAGGCTGGCAAAGGGACGACTAGGAGGAGACATGCTAGCGCACCAAATAACGTGCAGCCATCTGATGCCGACAAGAACCGCACAATGCTTTTTCAGGTTGGACGTTTTGAAGTGAATCTCATAAGCCCCGACACCAAAAGTGTGGTTCTGGAGAAGAATTTTAAGGACATCTCTTCCTGTTCACAGGGTGTTAAACAGACAGATCACTTTGGCTTTATTTGTCGAGATGTAGTGGAGTCTGGCCCTGCCCAGTATGTGTGTTATGTGTTCCAGTGCGCTAGTGAGTCTCTGGTGGATGAAGTGATGCTCACATTGAAACAGGCCTTTACAACAGCAGCAGCTCTCCAGAGTTCCCAGAACCAAATCAAGCTTTGCGAGGCTTGTCCAATGCATGACCTGCACAAGCTCTGTGAGAGAATAGAAGGCTTATATCCTCCCAGAGCAAAACTAGCTATTCAGAAGTACCTGTCCCAACTGAGTGACAACGAGCAGGTCAACATATTCGAGCAGGTGCAGAAAATGAAGCCAGCGTCCGATCATGAAGAAAATGAGCTTGTGATTCTCCACCTCCGACAGTTGTGTGAGACCAAGCAGAAATCTCATGTTCACATTGGAGAGGTTACTCAGAATGTTTCTGGCAGCAGCGTGACCTCTGATAACTCCAGCGCGGGTCGCAATAAACTGGATGTGTTCAAGAACAAAGCACGGAGCTCTCTGACCAGCTCCCTGGAGAACATCTTCTCacggGGGGCGAGCCGTATGCGAATGCGCCTGGGCAGCATGGGTAGTTTTGACCGCCAGGGCGACTCCCCTGGCGACTCTCCACCCGGGACTCCACCCAGTTACCTTGAAGAAGACCCAGATGCCCCACAGTTCCGGCGGCGGGCGCACACCTTCAGCCACCCGCCCATCAAGAAGAAGATCTCCTTCACTGACGTCTCCTCTCAGGCCAATAAGGCTCCTCTGCGCCGCCAACAGTCTTTGGCCCCAGAGCTGCTGCAGAGCAGCACCGTTGGTTTCTCGAGAGTGCGCAGTGTCTCTGAGAGCGAGTCCTACTTCGGCCTCTCATCCTCCTTCCACACCCCTACTTTCCTGAAAAGCTTTTACCAGGGTTCCCTTGGCTCGCTAGCCTCCCTGTCGGACAGCGGGAGTCTAAAGAGtggtaATGGCGAGGGCAGAAAGAGGTCTCTGTCAGGTTGCAGCACTGACTCTTTGACCCTGGTGCCTCCTCCGCGCAGAGTTTCTTGGCGGCAGAAGATTTTCCTGAGGGTGGCGTCACCCATGAACAAACCCTCTGATTCGATGCAAAACGTGGACCACATGGACGGTCGGGAGCTGCTGCCACTTTCTCCTCGGGCACTGACTCAGGATCAGGGGGATCAGACGGGCCCTCAGTCCCCAGAGCAGTCCTCAGCCGGACAGAAGCGGAGCCCAGCTGACTACAGGGGCCTGTGGAAGAAAGCCATCCACCAACAAATTCTGCTCATCAGAATGGAGAAGGAGAACCAGCGCCTGGAAGCCAGCCGTGATGAACTGCACATTCGTAAAATGAAGCTGGATTATCAGGAAGTGTGTTCATGCTCCAAAGAGTTGCAGGCACTGTGGGACAGGAAGCTGAGCAGCCCCTGCCGCACTAAAGTACAGTGGAACAAAGAGGAGATACACAGTGCCGTTTGCCAGGGTGTGCCTAAAAGTCGGCGAGGTGAGGTTTGGCTCCTGCTTTCCCAGCAGCACCGTTTGCGTCAGCGTCTCCCACACCGTCAGCAGCCACCTGAAACTCCTTTCCAGGACCTCCTGAAGCAGCTCACAGCACAGCAGCACGCCATCCTGGTGGACCTCGGCCGGACGTTTCCAACGCACCAGTATTTTAGTGCTCAGCTGGGAGCCGGGCAGCTGTCTCTGTACAACCTACTAAAGGCTTACTCTTTGCTGGACACTGAGGTGGGCTACTGCCAGGGCATCAGCTTTGTGGCCGGTTTGCTGCTGTTGCACATGAGCGAGGAACAGTCTTTCGACACCCTCAAGTTCCTTATGTACGACTTGGGTATTCGCCGCCAGTACCGTCCCGACATGATCTCTCTGCAGaTCCAGATGTACCAGCTGTCCCGTCTGCTGCACGACTATCACCGTAACCTGTACTCCCACCTGGATGAGCACGAGATCTGTCCCAGCCTGTATGCCGCACCCTGGTTTCTTACTCTCTTCGCCTCTCAGTTCCCACTCGGCTTTGTGGCCcgtatttttgACCTTCTGTTTGTGCAAGGCACAGAGGTGATTTTTAAGGTGGCGCTGTGTTTGCTGAGCAGCCACGAGGGAGAGATACTGGAATGCGACAGCTTTGAAAGTATTGTGGACTACCTTAAATCTACCATCCCTACCCTCACTCACAGCCAGATGGAGGAGATCATCACTAaggcGATTGAGATGGACATCTCTAAGCAGCTACAAGCGTATGAAGTGGAGTATCACGTCCTGCAGGATGAGCTTTCAGATGCTCCTCCACTGTCAGAGGACTCTGATAGACTGGATAAACTGGAGAAAGCCAATACCCAGCTCAGGAAACAAAACATGGACTTACTAGAGAAACTGCAGGCGGCTCGTTTGAAGATTCAGACATTGGAGAGTAGCGTTGAGAGTTTCCTGTCCCGCGAAAGCAAGATGAAGCACCTGATCCGCTCTCTGGAGCAAGAGAAAGCCTCCTATCAGAAAACCATCGAGCGTATGCGTAACAGTTTACCATCAGACACCACGGCTGAAGTGGAGATGACACAACTCAAATCCAGCACTAACGGCAAAGCCAAAGCTGCATGTAACAAACCTTAAAGCTCCGTCCAACTGACTGATGCAACTTATACTGTAGGTACATTAGAAGAGCATCAGTCTGCTTCTTCCTCTTTTGTGTTCCAATCGTTCTTCACCTTTGGCCTAATCAATCTGGAAACGTTTGACACCTTGCAGCCGCACTAAAAAAGTAAAACGATACGCAAGTGTTGTCTTTCCAAAGAGCAGCATGACTAACCCCATTGCATTAATGTCCACATGTGACTTTTTACGTTCACTGTGAACTTCTTTTTGACCTGGCACTCCGAACCAGGAGTTTGGAGGAAACCAAATATTTACCAGGTCAAATTTTTGCTGAAAGTGCTTCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko05415 Diabetic cardiomyopathy
ko04931 Insulin resistance
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-9881 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in myotome; pancreatic bud; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in acanthosis nigricans. Orthologous to human TBC1D4 (TBC1 domain family member 4).

Ensembl:

ensembl_id ENSDART00000143766

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073266 lncRNA upstream 161019 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073263 lncRNA upstream 192855 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073262 lncRNA upstream 277468 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00075147 lncRNA upstream 320177 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00075146 lncRNA upstream 336176 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00073277 lncRNA downstream 55921 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00075148 lncRNA downstream 436618 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00075149 lncRNA downstream 625512 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00075150 lncRNA downstream 626001 31265363 ~ 31269143 (+) True XLOC_037236
TCONS_00075151 lncRNA downstream 641039 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00073271 mRNA upstream 3364 30577925 ~ 30582236 (+) True XLOC_037230
TCONS_00073270 mRNA upstream 95186 30478768 ~ 30490414 (+) True XLOC_037229
TCONS_00073268 mRNA upstream 108289 30464641 ~ 30477311 (+) False XLOC_037228
TCONS_00073269 mRNA upstream 108289 30475563 ~ 30477311 (+) True XLOC_037228
TCONS_00073267 mRNA upstream 159018 30421626 ~ 30426582 (+) True XLOC_037227
TCONS_00073278 mRNA downstream 80686 30720048 ~ 30783892 (+) True XLOC_037233
TCONS_00073280 mRNA downstream 251187 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073281 mRNA downstream 436534 31075896 ~ 31258326 (+) False XLOC_037235
TCONS_00073283 mRNA downstream 528349 31167711 ~ 31259145 (+) False XLOC_037235
TCONS_00073284 mRNA downstream 582664 31222026 ~ 31248677 (+) True XLOC_037235
TCONS_00073260 other upstream 281270 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 907348 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 930602 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 951246 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073279 other downstream 180928 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 436694 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 856286 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 927037 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 1353949 31993311 ~ 31993433 (+) True XLOC_037244

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_00920570_00955979.mRNA True 4391 mRNA 0.51 19 CI01000009 920428 ~ 956574 (+)
bowfin (Amia calva) AMCG00014571 True 5493 mRNA 0.46 19 CM030128.1 18263955 ~ 18291505 (-)