RNA id: TCONS_00073268


Basic Information

Item Value
RNA id TCONS_00073268
length 1996
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_037228
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30464641 ~ 30477311 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attccaCCAGTGGGACAGGCACGAAGGGGCCTATGCTGTGTATGACCTTCAGTCTTTCTGGAGgggtttatttttttgtagagACACACTGTCATTTTTCTCTATTGCTCAGTTTATACTTGCTGTCATACAGATATCAGAGCTGGGCCACGTTTACTGGACCCCCGAGCCACAGAGTAACAGCCCACTCATTCATCTGAAGAGGACAAGACCACAGAAGACTCAACTGAAGACAGTCTCACAAGTCAGCAGTCACACAGCAGTGTAGGTGAGGAGTAATGGGGGACTGGAGTCTCTTGGGTAATTTCCTCGAAGAAGTGCAGGAGCACTCTACGTCGGTTGGGAAGGTGTGGTTAACCGTGCTGTTCATCTTCCGTATCCTGGTGTTAGGCACAGCGGCAGAGTCATCATGGGGCGACGAGCAGTCCGACTTTATGTGTGATACTCTACAACCTGGTTGCACCAATGTCTGTTATGACCGAGCTTTCCCCATTGCTCATATCCGCTACTGGGTGCTGCAGATCGTCTTCGTATCGACACCCTCCCTCATCTACATGGGCCATGCCATGCACACCGTCCGCATGGAGGAGAAGAGAAAACAAAAGGAGCAGGAGGAGAAGGCAGAGGCGGGAAAAGGAGAGAAGGAGTATCTGGAACATAAAGAGAAATTCGAAAATACAAAGACAAAAATCCACCTGAAGGGGGCACTGCTGCAGACATATGTTCTGAGCATTGTGATCCGCCTGGTCATGGAAGTGACCTTCATTGTGATTCAGTACATGATGTACGGGATCTTCCTGGATGCTCTGTATCCATGTTCAATGCTTCCCTGCCCCAACCCTGTGAACTGTTACATGTCCCGTCCAACTGAGAaaaatgtctttattgtgttCATGCTGGTGGTTGCAGCTGTTTCGCTCCTCCTCAGCGTCATAGAGTTATATCACCTTGGATGGAAACAGTGCAAAAAATGCCTTAGGAAACATGCTGACAAGCATGCCAATGACAAAATTCAAAACGTCAAAGCTGTTTCTGCAATTGAACCGATCAGGACAAGCATTCCAATGGATCTGGCTGAGAACATCCAGCCTCGTCTTTCTCAAACCTGCACTCCACCTCCAGATTTCAACCAGTGCTTAAGATCAAACCAAGGTCCAACATCTCCTCCACATCTTCATTCTCACCATCTTCATCACATCCACCAAACCTGCCAGCCCTTCACCAACCATCTGGCACACCAGCAGAACTCCGTCAACATGGCCGCCGAGCGGCATCACCACAGCCATGATGGCCTGGAGCCAGCCGTGGACTTCCTGCAGATGCATTATGGGAGTCCTGAGGCTCGGGTTCGAAGTGAAATGACACCCAGTACCCCTTCCACACCATCCTCCCATCCAGGGTTCTTCAGAGACAAGCGCCGGCTTAGCAAGACCAGTGGTACTAGTAGTAACCGACTCAGACCAAGTGATCTGGCCGTGTAGATCGTGAAAGTGGCAGTTTCTGAGGAAAAGAAGCTGGAAGCCTTAAGATGAGAGatgtgagtttgtgtatgtgtgtgtttgaatatgcttgtttgttggtACTATGAAATGGGATTTGGAATGAGAAAGGACTAAATACCACCATAAAACCAAGGCTAATTAGAATAAGATGGGAAGAATCTGTATCAGAGCATTTAATCTGGTTTCATTGAAACTGTTGTAATTGCTGAAGTGTGTAGATTTTTATAGGGTGGGATCAAGTGATCCTGAATAAaatcagatgaatgaatgaatggatgaatgggaGTGTACTACTGTCATAACTTGGTGACATTTAGAAGGTAGTACTGGATAGTACTGTGCACTGAGCCACTGACATAGtttatatttacagaaaaaaacttcCATGGTATGCATTTCAAAACTCTCAAATCACACACTGTATTTGAGCCAAAAGCAATAAAGCACTTATGTAAAACATCTTATAATAAAGTTCATTGCAAACATGGTAAATA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007154 cell communication biological_process
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005243 gap junction channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040407-3 Enables gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within cell communication. Predicted to be located in gap junction. Predicted to be part of connexin complex. Is expressed in several structures, including cardiovascular system; digestive system; nervous system; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in atrial fibrillation; atrial standstill 1; familial atrial fibrillation; and tetralogy of Fallot. Orthologous to human GJA5 (gap junction protein alpha 5).

Ensembl:

ensembl_id ENSDART00000128357

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073266 lncRNA upstream 40060 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073263 lncRNA upstream 71896 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073262 lncRNA upstream 156509 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00075147 lncRNA upstream 199218 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00075146 lncRNA upstream 215217 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00073277 lncRNA downstream 217972 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00075148 lncRNA downstream 598669 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00075149 lncRNA downstream 787563 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00075150 lncRNA downstream 788052 31265363 ~ 31269143 (+) True XLOC_037236
TCONS_00075151 lncRNA downstream 803090 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00073265 mRNA upstream 37524 30421489 ~ 30427117 (+) False XLOC_037227
TCONS_00073267 mRNA upstream 38059 30421626 ~ 30426582 (+) True XLOC_037227
TCONS_00073264 mRNA upstream 72141 30387930 ~ 30392500 (+) True XLOC_037226
TCONS_00073261 mRNA upstream 147851 30294096 ~ 30316790 (+) True XLOC_037225
TCONS_00073258 mRNA upstream 176195 30274637 ~ 30288446 (+) False XLOC_037224
TCONS_00073270 mRNA downstream 1457 30478768 ~ 30490414 (+) True XLOC_037229
TCONS_00073271 mRNA downstream 100614 30577925 ~ 30582236 (+) True XLOC_037230
TCONS_00073273 mRNA downstream 108241 30585552 ~ 30633366 (+) False XLOC_037231
TCONS_00073272 mRNA downstream 108241 30585552 ~ 30633366 (+) False XLOC_037231
TCONS_00073274 mRNA downstream 108289 30585600 ~ 30639362 (+) False XLOC_037231
TCONS_00073260 other upstream 160311 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 786389 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 809643 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 830287 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073279 other downstream 342979 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 598745 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1018337 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 1089088 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 1516000 31993311 ~ 31993433 (+) True XLOC_037244

Expression Profile

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