RNA id: TCONS_00073261


Basic Information

Item Value
RNA id TCONS_00073261
length 1671
RNA type mRNA
GC content 0.50
exon number 10
gene id XLOC_037225
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30294073 ~ 30316790 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATGCAAGTGAGTTACCCGAGGTCTTCCAGCAGCTCCTGGACTTCCTAAAGATGGACACCTGGATGTGTGTGTACATGATAGTGGGAATTCAGCTGTCCGGGAGCTTCGCGTATGACGGCTCTGGTTACTGGCCTTACACTGATGATGAAGATGTGCGATACACAGGTGTGCCGTGGTGCGCCCCGGTGAAAGTCAAACATGGTCACGTCGGCTGCCAGACGCCACGTGGAGAGCGTTATAAGAATGTTCTGGGAGCACGGTGTAAGATCCGCTGTAAGACGGGCTACGAGCTGCATGGCAGTAGTGAGATCGTCTGTATGGCCAGCAAACAGTGGTCAGGAAACTACGCCTGCAGAGAGGTCCGCTGTCCTAAACTGAACATGCCTGCTAATGGAGGTTTCAAGTGTACAGACGGCTCCTACTTCAACTCGCGCTGCCAGTTTTTCTGCTCACCAGGATACACACTCACAGGAGACCACAGTGCTACCTGCCAAAGCAGCAGAACATGGAGCGGCGGCAACAGCGTGTGCAATGATGTGGATCCTCCAGTTATCAAGTGTCCTAATGTAAAGGAGAAGACCGCTGAACCAGGGAAACTCACCGCCAAAGTCACATGGGACACACCTGAGGGCAAAGATGCAGCAGATGGCATCCTAACAGATGTTATTCTGAAAGGAAAGCCTCCAGGCTCATACTTCCCAGAAGGGAATCATAAATTATCATACACTGTGTTTGACCGTGCCGAGAACAAGGCGACCTGCAGATTTAATGTCAGAGTAAGAGTGCGTCGCTGTACCCCTCTCTCTGTCCCTGACAATGGCTGGATGAAGTGTGACAGTGCGGGTGATAATTACGGGGCCACGTGTGAATTCCGCTGTCTGGGAGGATACGATCTGAAGGGCAGCGCTGCCAGAGTCTGCCAGTTTAACATGGAGTGGTCCGGCCTGGAGACTTCATGCACTCccATGAATATTAATGTTGGAGTGCGGTCAGCAGCTGCATTACTGGACCAGTTCTATGAGAAACGCCGTCTCTTGATAATCTCTGCCCCCTCGGCTGCCAATCACTACTACAGGTTCCAGATGACTAATTTACAGCATGCGCAGTGTGGTCTGGACCTGAGGCACGTGACAGTGATTGAGCTGGTTGGAGTTTATCCTGCTCAGATCGGCCGCATCAGACACAGACTCATCGCCCCAGGACTCGCTCTACAACTCAGGTTGCTACTGCAGTTGTCCCAGAACTCATTCAGCATGGTGCTCCTGGACAAACAGGGTGTGGATAAGCAACGCTACACTTTCCCCATCACAGCAGCTGAGATCTTCACCACCATCGACACGATTCCCCTCCGCACCGAAGAGGCCGTGCTACAGAAAGAGGCTGGACAGAGCTGCTAGGTGTAGACATTTACACTACACGCATCCTTCTGTACTGGCTATAAAGCTAAGCGAACTACAAGAGAGTCTGGAAAGAGCTGCTATATCCTGGCACacattgaaaacacacacacacacacacatttttacatcCGAATGCATGAGTGAGTCTCtgttgtttgtcttttttaatgATGCTCTATTTTATTTGTCTGGTGTCTCTATTTATGTCAGAGTGGACGGTCTACTACCAAAgcaatattaatgtaataaagGCCTGTTTGATAATTGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050327-43 Is expressed in notochord; pharyngeal arch 3-7 skeleton; and splanchnocranium. Orthologous to human SRPX (sushi repeat containing protein X-linked).

Ensembl:

ensembl_id ENSDART00000026551

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075147 lncRNA upstream 28673 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00075146 lncRNA upstream 44672 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00075145 lncRNA upstream 138816 30154784 ~ 30155280 (+) True XLOC_037219
TCONS_00073246 lncRNA upstream 599897 29690678 ~ 29694199 (+) True XLOC_037214
TCONS_00073245 lncRNA upstream 614940 29677820 ~ 29679156 (+) True XLOC_037213
TCONS_00073263 lncRNA downstream 71126 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073266 lncRNA downstream 104737 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073277 lncRNA downstream 378493 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00075148 lncRNA downstream 759190 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00075149 lncRNA downstream 948084 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00073258 mRNA upstream 5650 30274637 ~ 30288446 (+) False XLOC_037224
TCONS_00073259 mRNA upstream 5650 30275139 ~ 30288446 (+) True XLOC_037224
TCONS_00073256 mRNA upstream 80425 30211038 ~ 30213671 (+) False XLOC_037221
TCONS_00073257 mRNA upstream 80425 30213144 ~ 30213671 (+) True XLOC_037221
TCONS_00073255 mRNA upstream 87333 30206211 ~ 30206763 (+) True XLOC_037220
TCONS_00073264 mRNA downstream 71140 30387930 ~ 30392500 (+) True XLOC_037226
TCONS_00073265 mRNA downstream 104699 30421489 ~ 30427117 (+) False XLOC_037227
TCONS_00073267 mRNA downstream 104836 30421626 ~ 30426582 (+) True XLOC_037227
TCONS_00073268 mRNA downstream 147851 30464641 ~ 30477311 (+) False XLOC_037228
TCONS_00073269 mRNA downstream 158773 30475563 ~ 30477311 (+) True XLOC_037228
TCONS_00073244 other upstream 615844 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 639098 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 659742 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073239 other upstream 667817 29616928 ~ 29626279 (+) True XLOC_037210
TCONS_00073228 other upstream 760451 29520843 ~ 29533645 (+) True XLOC_037207
TCONS_00073279 other downstream 503500 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 759266 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1178858 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 1249609 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 1676521 31993311 ~ 31993433 (+) True XLOC_037244

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_00719164_00724772.mRNA True 1580 mRNA 0.49 9 CI01000009 719164 ~ 725051 (+)