RNA id: TCONS_00073259


Basic Information

Item Value
RNA id TCONS_00073259
length 5081
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_037224
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30274637 ~ 30288446 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACACAGGTGCTGTATTTACCTTTGGAAAGAGTAAAATAGCAAACAATGTGCCCAGCAGGTTATGGCTGAAGAGTGATATACCTGTGCACATCTCATGCGGACAGTCACACTCAGCCTTTGTAACAGAGCAGGGTCGTTTGTTTGTGTTTGGAGATAATAACAGAGGTCAGCTTGGTCTGCAAATCAAAGGACCAGTGACTAAACCGGTCTGTGTTAAAGTTCTTAAAGGTGAGAGAGCGCAGTCTGTTGCCTGTGGGACAGATCACACACTCGTAAGCACCTCACAAGGAGAAATACTTGCAGCTGGAGGAAACAGTGATGGACAGCTGGGATTGGGCCACTGTAACGACAGCATCTCTTTCCAGCGGCTCCGCCCCTTTTGTGACTATGCTCCAATCAAATTGCTCTCTGCAGGTGACCACACTTCTGCTGCACTTACAGAAGATGGCAGGCTGTTTCTGTGGGGTGATAACTCTGCGGGTCAGCTTGGATTTGGAAATGACAGCCATGCCTTATTGCCTAAAGAGCTGAATATGGGGCAGTCCATTCACTGGGTCTCATGTGGATACAGACACTCTGCTCTGGTCACAGATAGTGGGGATGTTTATAGTTTCGGGGAAAGTGCAGATGGACGGTTGGGTCTCTCTGCTCATCAGCTGGCGAATCACAGTTATCCTCAGCGGGTTGAGTCTTTGCACAGTGTTCTGCAGGTGGCATGTGGAGGAAAACACACACTCGCCCTCACAGAGGATGAGTTATATTGTTTTGGCGGTGGTGAGTTTGGGCAGTTGGGGTTAGGGACGCTTGTGTTTGTAGCAGATTCACCGGTGGCTGTCGGCCATTTCAGGAAAGGCAGAGTCACCCATGTCACATGTGGAGAACAGCATAGTGCACTTATAACAGATAGTGGTCTTCTCTACACGTTTGGAGATGGCCGTCACGGGAAGTTAGGCCATGGAGATGAAAACTTCACCAATCAGTTCACTCCAACCGTGTGCCAGAGGTTCTTTGAATACTCAGTCATGACTGTGGCATGTGGTTCCAGTCATATGCTAGTGTTCGCACGGCCACGACAACAGGAAAATGAAGAAGTTTGTTTGGAGGATGAAGACGTTACCTACTCTTACCTGGACAGGTGTTATACCACCATGATACAAGGGCAACCATTAGAGCATATTCCAGACCCTGAATCTGCTCTTGTTTCACAATCCACCTCTCTCTCCTCACCTCTTCCAACCTCTCATCGCTGGAGCCTATCAACACGTGCCAGACGCAGACAGAAGGAGAGCTCATCTGCACAGTTTGGTCCAGAATTTAGCAATCTTCCTCCTCTCACAACTAGCTATACTGCACTTGCCCTAACAGGCACCATCCTACAGCCCAGATCTGCAAAAGGCACTCCAAAACACATTAATACTGATGCCCCTGTGGATACCTCCATCACAGTTCTTTCCAAGGAACCttcatTCACACCCATCACCAAGAGCCCAGACGACTGCCAGTGTGTTGAAACGTCTGAAAACAGCCTGTCAGACAAGAATTCTGCTGGAAGGGAAGAGAACGTATTTCAGCAGGCTCTGCCTACTGAATTACAGGTTGCTTCTGTTTCACATCCATCAATAACAGAATCTCAATCATCAAGCAATCTAATGCATAAGAAGCCCAGGCCTGGAGATGCAGAGAACAATGCAGAGGTGGAGGAACAATCTTCTGTTACAGCACTGCAAAGCAAAGTGCAACCCAAAATAGTCAAAACAACTATCCAGAGTACAAATAATAGATATAAAGGTAAAAAAATAGAAGTCAAATCATCTCCAGATGGAATATCAGCAAAAGAACTTAGTAAAACTTGGAGTACAAATATTGATTTAAAGGAAACTGTTGCAAAAGCAGACAGATATAGTAAAGATTCCAGAGGTGAAGAGGTTATTACTCTTTCTGATACAGAGCAAGAGACCAAGTCAAGTTCAATTAAAATTCCACTGACAAGTTCTTCAGTTCAGGAAGTTGAAAAAGTAAGAACAACACCAACAAGCACTCAAGAGGTCCAATCTCCTATAAGCAAAGAGGCTGGTATTCCAGAAAAAGCCTCAAAAAGGGTCAATTCACCGATCAAGGTTCAAGAAATGCCCACCGGTGAGATGGAAGTTAGTAAAGTTAAACCAACGCCTCAAAGCGACATTGAGCCTTCAATTGAAACACTGATCAACACACAGGAACAGCGGAACTTAACACCAGTCAAAATTACAGCCGAAATGCAAAGCACCCtaaaaaaaggaaatgaaaagATGGATGTTAACACCCCTAGTGATCATACAGCAAAGAAAGCAAAAAACAAGAGAACCGCTGTTGAAAGAGGCCCAATCGCAGAACTATCACCCCAAACACCCAGCCCTCTATCAGTTTCAACACAAAAGTCCAAAGTGGAGCCTGAAAACTCAAGTTTGCAGCTTAGATCTGCAATGCAAACACAAGAAGCAACAGAAAAAGGGGAAACGAACAGTAATTCACCTCAGAGCTCAGAGAATAGATCATTTCCCACAATAAAGAGCAAAAAATCAGATGCAGAAAAAAGCCAATCCGCTTCTACCCTGCAGTCTGACCAGAAAAATAGCCAGTCATCCACCAACAAAGCACTTGCGGAACAGAAACATAAATTTCCTTCTATTAAAAGCTTAGCTCCAGAGAGAAGCCACTCAGTTTCCAATTTATGGTCCAATAACCAATCAGCAACCAATAAATCGTCCGCCCCAAAAGCAGCTGAATCTGGTAAACTGTTCAGCTCAACAAGTTCATCACCTCAGCTCAGGCAGTCACCGCTTAACAAGAGGAAATTGAAAACAGTTGAAGATAAAGAGCCGGTTTTGGTAACAGAGACCCCTCATCAACAGTCTGAGCAGAGCCTTATGGGTAGTGTAGTTTCAGTGCTACCAGCTATGGCTATAGCTGCACCACTACTGATAAAAGCAGCTGAAGTTCTCTCTGAAACGTCACTAGAACAAAGTAATGAGATGTCATCATGTGCATCGGCGTCTCAGGAAACAGCAGGAAATAAGATCCTGATAGAGCAGGAAGTGGAGCAAGACACCACAGTTCAAGATATATCAGCAACTGAGGAAACAGATGACAGAAACAAACAGGAGATCGTAGAGGACTTACAGAATGAGCTTGTTTCAGATAAAGTGTATACAGGTGGTAATGAAAaaatggatgatgatgatgatgaagatgtgaAAGGACATGAGAcagaaagagaagaaaaagagAGTGTCGCTGAGGAGGAGGATAACAGTGAAGGTTGTGGGAAGAAAGACAATGCTTTTGAAGACGAACCAGAAGGAGAGAGTGAGAATGCTCCAAAAGGAGGAGAGGACAGTGAGGAAGAGGAAGGCGAAGAAGAGGAAAGTGATGCAGTTGGACAGGAAGAGAATGGCGATGATGGTGGAAAGAGCAGTGAAATTGAGGGAGAGAAGAGTAAAGGAGGAAGTGGAGACATGGCTGAAAGTGAAGAGGTGGAGGAAAGTGAAGGACAAGAGGAAGGAGAAACTGAAGATAAAGATGCTGAAGATGAGGAAGAAGAGAGAGAAAGCGAGGATGAAGACAGTGAGAGACAGATTGAGGATGAGGAGAAAACCGATGCTGAGGAAGGAGAGAGCAGTAATGAGGGGGAACCTGAACGATCTGAGAGTGAGGATGTTAGCAAGAACGATCGATCTGATGAAGAGGAAGGAGAGAGTGAAGAAAATGGGAGTGAAAGAGAGGAAGAAGAGGATGTATTGGAAGGAGAACAGGAAGAGAGTGAAGTTGGGAATGAAGATGAGGAAAAtcaggaagaggaagaggaaaaCCAGAcaaaagaggaagaagaagaggaaaatAATGAAGAAATGAAAGAAGAGAACAGTAGCGAAGATGAGGGAgaagagagtgtgagagagaaagaagagCAGGAGGTGGAAGAGGAAAAACTGTCAGAGGAAGGCAGTGAAAGACAGGAAGGAGATGAACAAATtgaagaagaagatgaagagGGCGAGAAAGAAGGAAAAATGAAAAGTAGTGAAGTGAAATTTAGAGAAGCGGAAACAGATGATGAAGAAAATAATGAAGAAAACACAGAGGACAAAAGTGGAAGTGGggaagaagaagatgatgatgaaacaGAGAAGCAGGAAGAGAGACATGGAAGGAAAGATAGAGAAACTGAGGAAGAAGAAGGAGgtgaagaagaggaggaagaagcAGAACAGAAGGACACCAGCGAAGAGGAAGAACAGGCAGAAGAGAgtgaagaagaggaggaagaaaCAGAGCAAAACAGTGGAAAAACAAGAGAAACTAGTGAGGAAGAGGAAGAACAGCAAGAAAatgaggaagaagaggaggaggaagaagaagcaGAATGGAAGGAAAAGAAACAGAGAGAATCTAatgaagaggaagaggaagaaggCGAGGAAGAAAAGGAGGAAGAAGGAGAGCAGAAAGAAAATGTTgaaaaagataaacaaaacagCAAGCTGAGGGAAAATAAagatgaggaggaagaagaggaagaggagggtgaagaggaagaagaagagggtGAAGAAGAGGAGAAtgaacctaaaaataaaaatataaaaactgggAAAGATGGCAGAAAACAGAGAACAATTactgaagaggaagaagaagaagaagagggtaatgaagaggaagaagaggaggaagaagaaactaagcgggaaaaaaagaatataaaaactgagaaaaatagacacaaacaaacagtaactagtgaagaggaagaagagggtgaggaagaagaggaggaggaggaggaggaaagtGAAGAGGAAGAAGGTCAAGAGGAAGACGAAAGTGAAGAAGAGAACGAAAAGACCaagaaaataacaaaacagaAAGCCAAACCCAATGTGTTACCTGCACGCAGGCAGACTGGACAGACAGAAACCCAGAAAACTAGACCAAGAGGCAAacagaatgttaaaataaggaaGCAAACAGATGGTGCTCAGGACCCTCAGTTCTGGAACAATGTTCTTCCTCAGTATCTAAACCTTAAATGATTCTGC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-423 Is expressed in several structures, including eye; gonad; muscle; neural tube; and optic cup. Human ortholog(s) of this gene implicated in X-linked atrophic macular degeneration; X-linked cone-rod dystrophy 1; X-linked retinitis pigmentosa and sinorespiratory infections; retinitis pigmentosa; and retinitis pigmentosa 3. Orthologous to human RPGR (retinitis pigmentosa GTPase regulator).

Ensembl:

ensembl_id ENSDART00000131781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075147 lncRNA upstream 9716 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00075146 lncRNA upstream 25715 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00075145 lncRNA upstream 119859 30154784 ~ 30155280 (+) True XLOC_037219
TCONS_00073246 lncRNA upstream 580940 29690678 ~ 29694199 (+) True XLOC_037214
TCONS_00073245 lncRNA upstream 595983 29677820 ~ 29679156 (+) True XLOC_037213
TCONS_00073262 lncRNA downstream 5627 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00073263 lncRNA downstream 99470 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073266 lncRNA downstream 133081 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073277 lncRNA downstream 406837 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00075148 lncRNA downstream 787534 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00073256 mRNA upstream 61468 30211038 ~ 30213671 (+) False XLOC_037221
TCONS_00073257 mRNA upstream 61468 30213144 ~ 30213671 (+) True XLOC_037221
TCONS_00073255 mRNA upstream 68376 30206211 ~ 30206763 (+) True XLOC_037220
TCONS_00073254 mRNA upstream 68400 30204415 ~ 30206739 (+) False XLOC_037220
TCONS_00073253 mRNA upstream 146379 30112423 ~ 30128760 (+) True XLOC_037218
TCONS_00073261 mRNA downstream 5650 30294096 ~ 30316790 (+) True XLOC_037225
TCONS_00073264 mRNA downstream 99484 30387930 ~ 30392500 (+) True XLOC_037226
TCONS_00073265 mRNA downstream 133043 30421489 ~ 30427117 (+) False XLOC_037227
TCONS_00073267 mRNA downstream 133180 30421626 ~ 30426582 (+) True XLOC_037227
TCONS_00073268 mRNA downstream 176195 30464641 ~ 30477311 (+) False XLOC_037228
TCONS_00073244 other upstream 596887 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 620141 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 640785 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073239 other upstream 648860 29616928 ~ 29626279 (+) True XLOC_037210
TCONS_00073228 other upstream 741494 29520843 ~ 29533645 (+) True XLOC_037207
TCONS_00073260 other downstream 5627 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073279 other downstream 531844 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 787610 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1207202 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 1277953 31566399 ~ 31572679 (+) True XLOC_037241

Expression Profile

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