RNA id: TCONS_00073267


Basic Information

Item Value
RNA id TCONS_00073267
length 873
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_037227
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30421489 ~ 30427117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTACGAGaggtaaatgaataaaacatttaaaaattaaagcaataataattgttttgttaATGCGATTGCTTGTGCGGTAATTATATGTCCTTGATGCAATTTGTGTCATCTTTCACAGTACAGGATGAAAACGATTGTACCTCTGAACCCTTCACAAAACCAAGGCTGTGTTGTAAAATGGTTAACAAGATAAGGAACACTTTAGTGTCAACAGAAACATTTCTACAGAAAGAAAATATCACCTTGGACACATATAAGCGTATCATAAGAGACCTGGTAATACATCTGGACAGAGTCACAACAAAGgtTTTTGTAAATTCCCTACCTTACAATGTGATGGATGACCTGGGGTTGCAAGAATGTGAAGCTTTTGTTCTCAGGTGGTCTGAAGAGCTTAGGAAATTACAATCCGAATACAGAAACCACTTAGACCAGATTTCCAATATTAAGAGATTGAGTTGGAGTCTGGATGTATGTCTAAAAACCAGAGAAGACCAAATTCAGAAAGTTCAGAAAGAATTTCAgtggtttattaatattttgaagtCCCTTCCAAAGtcTTCAGTGTGTCAAGACGGATTTGCTAGAATTGAGTTGTTGAATCTCTACAGACAGTGGAAGAAAGGCCAGCTTATCAGTATGCTTCCTATCATGGACTTTATCATGAAGACACTACTTAAGGAAAAGGATTCAATTTTGAAAAGGAAGCTTCAACCTAAATCAGCTTAAGTGGAAAAAGAAAGAGAAACATTTCATCAGATGCAAAGAGAAATGACTGGGTATTGGCTTGCCTGGAGTAAACTCACACTGGAATTGTGAAAGGAAAGGCTGAAAGAAGCACTATAGTGCATATACAACAAAGCTGGGTAGTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-19 No description available

Ensembl:

ensembl_id ENSDART00000132058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073263 lncRNA upstream 28881 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073262 lncRNA upstream 113494 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00075147 lncRNA upstream 156203 30264357 ~ 30265423 (+) True XLOC_037223
TCONS_00075146 lncRNA upstream 172202 30248495 ~ 30249424 (+) True XLOC_037222
TCONS_00075145 lncRNA upstream 266346 30154784 ~ 30155280 (+) True XLOC_037219
TCONS_00073277 lncRNA downstream 268701 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00075148 lncRNA downstream 649398 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00075149 lncRNA downstream 838292 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00075150 lncRNA downstream 838781 31265363 ~ 31269143 (+) True XLOC_037236
TCONS_00075151 lncRNA downstream 853819 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00073264 mRNA upstream 29126 30387930 ~ 30392500 (+) True XLOC_037226
TCONS_00073261 mRNA upstream 104836 30294096 ~ 30316790 (+) True XLOC_037225
TCONS_00073258 mRNA upstream 133180 30274637 ~ 30288446 (+) False XLOC_037224
TCONS_00073259 mRNA upstream 133180 30275139 ~ 30288446 (+) True XLOC_037224
TCONS_00073257 mRNA upstream 207955 30213144 ~ 30213671 (+) True XLOC_037221
TCONS_00073268 mRNA downstream 38059 30464641 ~ 30477311 (+) False XLOC_037228
TCONS_00073269 mRNA downstream 48981 30475563 ~ 30477311 (+) True XLOC_037228
TCONS_00073270 mRNA downstream 52186 30478768 ~ 30490414 (+) True XLOC_037229
TCONS_00073271 mRNA downstream 151343 30577925 ~ 30582236 (+) True XLOC_037230
TCONS_00073273 mRNA downstream 158970 30585552 ~ 30633366 (+) False XLOC_037231
TCONS_00073260 other upstream 117296 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 743374 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 766628 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073237 other upstream 787272 29616854 ~ 29634354 (+) False XLOC_037210
TCONS_00073279 other downstream 393708 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073282 other downstream 649474 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073288 other downstream 1069066 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 1139817 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 1566729 31993311 ~ 31993433 (+) True XLOC_037244

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_00805606_00808374.mRNA True 1479 mRNA 0.39 7 CI01000009 804904 ~ 808404 (+)