RNA id: TCONS_00075150


Basic Information

Item Value
RNA id TCONS_00075150
length 2659
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_037236
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31264874 ~ 31269143 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAATCGGAGCCCCTCACGCGGCCCGCGACCAACATTTTGACAATGCCGGTGATGAGCACGAGGTGATGAAAGGAGGCTGTACGAGAGGGCCATTCCGCTTTATGGCATCAGAACTCTCCTTATATGAGAGGGAAAAGAATTGTGCGTTCTTATTTTAGGTGATTTTCACACGAACTAGACATGGCATGAAGACATTCAGCGGCCTACGTGATTCAGATTTCACATCAGATCTGACAGGGTTTCTATAAGGTAATGTAAGAAATGTAGCCATGAAGGCAGTATAGTGGGCAAAATTGAAAACTgccatatacagtgctcagcataattgagtacaccccattttgaaagtgaatatttttatccttttttcAGTGGatgtaggcaatgtattttagtgcatttaaacaaaagagattaattaaacagatatatttattaaaataagattttagtcaccaaacatatttagatattgaaagataatacaattacattcaggctaaataatgcaaaaaataaataaataaaacctacaaaatttcaacaaaacttctattttttaaatttgtgtttaatgtttttctaTACCATAAATTTGTGTGTAATCGTTTTTGACTGTTtaagtaagttattttgttagataagctccagatttggcttcagtactgactaatctaatgtatatgcacaaaaataatattgtacaGATTCCTATTAAAACTATGAATCTAAGAGATAGATTTTTAGAGGGGTGTacgcatatatgctgagcactgtaaattgTAAAACTGTAAACTTTATACCAACATGTTGATGTTATGTTTATGTACAGTGTACTGCATAGTAATATAAATGGGGTTTCTACAGGTTaaatcaagttaaatttaagacctttttaagaccattggtAATGAAATGGTCTACCATTATACAAAGCCAAACATTTTGAATTTTTTCCACTGGCCCAGTTAAAACATTGTAGGAAGATAATGTTACCATATTggttaataaagttaataaataatcttttgttaaattttttattgaGAAGGAAGGTTAGTGATTGGATAGGTGAAAATGAAGacctgttaaaaattatttaagactTACAAGACAATATtgcagtaaatttaagacttttaacgCCTAAAATTTAGActttgaagatattttaaaactttttaacacCTTACAGATAGTTTAATTTgtgataaaacaaagaaacatgaTTACTGAGAAGGGTCGCCAGTCTATTACAACAAAGATCAAATCATTAATCGAAATGCAAGAAATTTGAATAACTGGTTATCACTCTatattgtatttcattttaaaggcTTTGTTagttcaaaaaaattaaaaattcttctgttaaacataaaagaagatattctgaatgCTGACATTCTgacagtcaatggttacaggtttccagcttccttcaaaatatcttctacaGAACAGACTTATATAggattgaaacaagtaaagggtgatcaaataatgacataattgttcatttttgggtgaactatcccctatATACAaacttatttttctttaaaataaaggcACTTTAAAAATGATGCAAGAAGTGACTGATCCAACAATTTTACCCCAGCATATGGCTTAGATAACTAAAAATATCCATAACACACTACGCCAGCTTCATCATAGTACTGTGTTTCTGATGTTTAACTAAGCGTCCCCACTGTACAGCCGTATTCATGTCGACACTATAGtgagccaaattgcttatcaagGTTGGACATATGCGTGTGGCCTATGCTTATTCCAGGATGCGCAAACACAGCACTGTAAATCGCAGACTATGCAGCTCAGATTCACACCTGCTGAGGGGGAAAGGAAGCATTGCATTCTGTAGATATGGCCTGTAAGCACGCCTAGCGTACCTTCACAAAATGTCACAGCAGTTATGAAAGCAAGTCATTATCAACTCAGGGGGACCCTTGACACTGGTCTATAAGAGATAGTTCCAGTAGTTCAAAGCCATGTCTAATGGCCATTCCAAGGTCAGCTTGAAACAGAGAATGAGGCTTGTGATGTTTAAGAACATCTAGCCACCCTTGTGAAGGCAACAGGGGGTTTAGGTGGCCGGTGAGTCCAGGAGGTTTTAGGTGAGCCTGTGTTTATTAAGCACTGGATGCATGCTTAATGTAGGTGATCGTAATGTGGAAGTCATAGAAGCAGACTGGATTTTTGAGGGCTTTGACTGTTCTTCTCTTACACTTAAGAGTTGTATATTTGTACTCTCTTTTCTCGCTGAGATGATCCAGCACTGTGGTTGTCCAGCTGTGCAGGATGATTTCCTCTCACTGAATGTTGACCTTTTCCTCTATGAAAGATGCTGTATTCAGAGGCACGACTCTGATGTGCTGCTCATGGTAGTTCGTCAGATGTGGAATGGATCAGCATCTACAGGATGTAAAATCAAAATGGGAAGCCAATGCTGTAAGGATTGTTCAATGAATGCACATAGTTTGTGCGTTGACATACTGCTCTTTTTTacgtaaaaaaatatttatgattatatataaagctgctttaaaactatGAATGTATTGTTGTTTTTGACTCGTGATAATGTACCACTTTAATAGACCGGTAAAGGACAGATAAcagttttaaacttatttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075148 lncRNA upstream 109135 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00073277 lncRNA upstream 548457 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00073266 lncRNA upstream 840782 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073263 lncRNA upstream 872618 30387916 ~ 30392745 (+) False XLOC_037226
TCONS_00073262 lncRNA upstream 957231 30294073 ~ 30308132 (+) False XLOC_037225
TCONS_00075151 lncRNA downstream 11258 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00074916 lncRNA downstream 59298 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00074915 lncRNA downstream 59298 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00074914 lncRNA downstream 59298 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00075152 lncRNA downstream 59906 31329049 ~ 31342609 (+) True XLOC_037237
TCONS_00073283 mRNA upstream 6218 31167711 ~ 31259145 (+) False XLOC_037235
TCONS_00073281 mRNA upstream 7037 31075896 ~ 31258326 (+) False XLOC_037235
TCONS_00073284 mRNA upstream 16686 31222026 ~ 31248677 (+) True XLOC_037235
TCONS_00073280 mRNA upstream 202659 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073278 mRNA upstream 481471 30720048 ~ 30783892 (+) True XLOC_037233
TCONS_00073285 mRNA downstream 13018 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073289 mRNA downstream 265458 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073290 mRNA downstream 286900 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073292 mRNA downstream 483485 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073293 mRNA downstream 526200 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073282 other upstream 98961 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 250037 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073260 other upstream 961033 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 1587111 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 1610365 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073288 other downstream 226505 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 297256 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 724168 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073304 other downstream 831060 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073307 other downstream 914912 32184055 ~ 32187252 (+) True XLOC_037247

Expression Profile

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