RNA id: TCONS_00074915


Basic Information

Item Value
RNA id TCONS_00074915
length 2741
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_037237
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31280401 ~ 31342609 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gTAAAATAAGCTAGTACAGACAGTGCCTTAAATGTAAACAACTGCCTAATTACTTAATTTTGAATATAACCATAATGTAGATCTAATCCTAATGTAATCTTAATTGAAGTCAGTTATATTACATCTACAGTATAACTTCCTCTCAATCAGTTTGAGTCCATAAATGCAGTGTAGATGTCCGAGAGCAGAATCAACCAAGCAGAAATGAACAGACAGACATTGTGTTCCCCATAGTTTCATGTCCAGTGTGCAGATCCCGTTTCCACCAGCCTGCATCTTGTTCTGCTATTCCTTCCCTCTCAGCTTTGGGTCTTTTCGAGCGGTCAGTCTGCAATTACCCATTCCCTCCACCACCGCGATCTTACCTGAGCTGCATGGGCCCGGAGGTTTCCAATAAATATCCTCAGCTTTACTCACACAATGATGCACAGCTCTGAAGAAAATGGGCAGGAATGAACATACACTGGTGCCTTTTTTTTGCCCACCTGCactgtctctttctctcacacatgCTTATTTACACAAGAGCGAATCTGCTCGGCTTCTACCTGATATGCTTGAGCTGTAAAAGTAAAGCCTTTATTATCTCGGCAGGCAGCAGAAGGTGTCACCTTCATCGGACCCGACACACATGCTACTCAAACCATGGGAGACAAGATCAGGGGCAAATTAATCGCCAAGATGCCAAGTAAAGCAGTCTGGATCATACGTCACGAGCTGAGGTCTGTTATGGAGGCCAGTGGCGAGACGGAAAAGCCATTCGGGAGAGCCAATCCTACAGATACAGCTGCTGCTTTTCCTGCAAATACACGTTTACAAATTAGCACTTCTCACAGGCCTGGGACCTGCTTTTACGGAGCTGGGTTTTCAGAGCAGCCTGAAAGTGTGAACGAGTTCCAGAGGGCAGATCATTTGGAGGAGTCTGGATAATGAGATTCTTTTCTTAATGCCATTGAACTCCATTCAATTAGTGCAAAGGGCCTATGTTTGTGACTATTGCGTGCGTACAGTGTGCTTCTGTGTGTAATTGACTTTGTAAGCCCTTGAGGAGTAAACTTTTAGTGGTTTCGAGCATTCGCTTGAGCACAAGTAtgtttgtctattctttttttttccttcatctgTTATTCCCCCTTTTAGCCTTAGTGGGCTGCTTGGGCCGAtcttgtgtgtgcttgtgtgatgtatagattaattaaataagcaTATTGATTCGTGTTCTGGCAACACAGAGCGTGGGGTTTTAATTAGCCCACGCTTGAGTGTGTTAACATTCCTGTCTTATCTGTGTGGAACCAAGTGGAACTGAATGCATGAGGGCTGCTCATCAACTCTGAATTTCcaataaccttttttttcttcttgtttggTTAAGTTCGACCCAAAGCTCAAACGTTAATGTAAGTGTATGCAACACTTCaatttttaatgctcatttttaagtgcaaatatttttgtctatttatACTATTTTTCTTGAATACTGTATTGAAGGAATGATATGTAAATAGCTTTGCctcatatacactcaccagccactttattagatacactagtacagggttggacccccttttgtctttagaactgcattaatcctttgtggcatagattcaacacggtactggaaatattcctcagagattttggtccatattgacatgatagcattacgcagttgctgcagatttgtcggctgcacatccatgatgcgactcTTCCGTTCCACCACTTCCCAATGGTACTCTATTggtttgagatctggtgattgtggaggccatttgagcacagtgaactcattgtcaaatTCAAGAAACTCTGAGATCATTCGCTCTTTATGACATTGcatgttattctgctggaagtatcCATCAGAAGTAGAGTACACtctggtcataaaggaatggcatggtcagcaacaatatttaggtaggctgtggcattgacattttcatgttgttgatgccaaaatctGACCCTAACATTCCAATGTCGGAGCAGAAAtttagactcatcagaccaggcaacgtttttccaatcttctattgtccaatttaggTGAGCctttgcaaattgtagcctcagtttcctgttcttaattgtcaggagtggcacctggtgtggtcttctgctgctgtagcccatctgcctcatggttggatgtgttgtactttcagagatgctctactgcattcctcggttgtaacaactggttatttcagttactgttgcctttctgtcaacTTAAATCAGTCTtttctcctctgacatctggcatcaacaaggcatttacacccacagaactgccactcactggatattttctcttcttcagaccattctctctaaaccctagagatggttgtacgtgaaaatcccagcagatgagaagtttctgaaatactcagaccagcccatctggcaccaacaatcatgccatgttcaaagtcacttaagttatctttcctccccattctgatgctcggtttgaactgcaccaGATTGGCTTGACCATATCTAAATGCTTAAATGCATTAAGTTCCTGCATTTGCTTAAGccagcagttggataggtgtacccaataaagtggctggCGAGTGTATGATAACATGTAAAATGCATTAGCATGCTGAGATTATTAActtgtaatgtatgtatgtatatacataacattttattatacactcaccagccactttattaggtacacctatccaactgcttgcTTAAGcaaccctgat

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0009799 specification of symmetry biological_process
GO:0048731 system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0030154 cell differentiation biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048793 pronephros development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0048869 cellular developmental process biological_process
GO:0042572 retinol metabolic process biological_process
GO:0034332 adherens junction organization biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075149 lncRNA upstream 59298 31264874 ~ 31269143 (+) False XLOC_037236
TCONS_00075150 lncRNA upstream 59298 31265363 ~ 31269143 (+) True XLOC_037236
TCONS_00075148 lncRNA upstream 172213 31075980 ~ 31156228 (+) False XLOC_037235
TCONS_00073277 lncRNA upstream 611535 30695283 ~ 30716906 (+) True XLOC_037232
TCONS_00073266 lncRNA upstream 903860 30421527 ~ 30424581 (+) False XLOC_037227
TCONS_00073286 lncRNA downstream 9299 31347037 ~ 31428734 (+) False XLOC_037238
TCONS_00073287 lncRNA downstream 9300 31347038 ~ 31395689 (+) False XLOC_037238
TCONS_00075153 lncRNA downstream 79096 31416834 ~ 31428734 (+) True XLOC_037238
TCONS_00075154 lncRNA downstream 575758 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00073295 lncRNA downstream 732219 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00073285 mRNA upstream 41431 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073283 mRNA upstream 69296 31167711 ~ 31259145 (+) False XLOC_037235
TCONS_00073281 mRNA upstream 70115 31075896 ~ 31258326 (+) False XLOC_037235
TCONS_00073284 mRNA upstream 79764 31222026 ~ 31248677 (+) True XLOC_037235
TCONS_00073280 mRNA upstream 265737 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073289 mRNA downstream 196863 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073290 mRNA downstream 218305 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073292 mRNA downstream 414890 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073293 mRNA downstream 457605 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073296 mRNA downstream 732251 32069989 ~ 32071430 (+) True XLOC_037245
TCONS_00073282 other upstream 162039 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 313115 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073260 other upstream 1024111 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 1650189 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 1673443 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073288 other downstream 157910 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 228661 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 655573 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073304 other downstream 762465 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073307 other downstream 846317 32184055 ~ 32187252 (+) True XLOC_037247

Expression Profile

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