RNA id: TCONS_00073287


Basic Information

Item Value
RNA id TCONS_00073287
length 658
lncRNA type lincRNA
GC content 0.48
exon number 3
gene id XLOC_037238
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31347037 ~ 31428734 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAGCAAAACAGTCCGACAGGGATTCGACTCTGAATTTACCTGAAAGTTTAACGTTAAGTTACTCACGATGAAGTTATTCGAGTATTTATTTGTTACATATAACAGAAACTGTGCACTTCAGAAACAAGCCATAATAATAGCGCTGAATGTTTAACAGTGACAAAAACCAAACAAGGAAATCATCTTGTTGTGCGGACAGTGGACACAGatTTTCCCTGTGAAAAAATTATCAGCCATCTCTCCTGTACTGTTGACTCACGGGGAGCGGCAGTGGTCAAAGGTGTGGTTAACGGCTTAACTCGACGTCCCAAAAGATCGGTCACACACTCCTTAAAGTGGCATCGCCTGAAGGGCACTGATAACACGCATCCTGCGTTCCTATTGGTTGATGTCCAGAAAACCAGCAATCTCACATGGAAGAATCTGTACATTAGAGGAAAGCTGTCAGGTATTGAGAGGAGAAGAGGGGGGCTGCCCGCTGCTGTGCCGGCATTCGCCGCGACTCACGCCCACCTCCGAGTCACATCTGGTGCAGGGAGCGAGCGCTCCGATAAGTGAACCGAAGCCGATGGTGCGCCACACAGATGTTGCCCCCACTACTTTCTCCTCTAAGTCTTCCAAATCTCCTTGAGAGAGTCGCACACACTTTGGCCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000154698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075151 lncRNA upstream 4429 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00075153 lncRNA downstream 21145 31416834 ~ 31428734 (+) True XLOC_037238
TCONS_00075154 lncRNA downstream 517807 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00073295 lncRNA downstream 674268 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00073308 lncRNA downstream 793450 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00074917 lncRNA downstream 828006 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00073285 mRNA upstream 60028 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073283 mRNA upstream 87893 31167711 ~ 31259145 (+) False XLOC_037235
TCONS_00073281 mRNA upstream 88712 31075896 ~ 31258326 (+) False XLOC_037235
TCONS_00073284 mRNA upstream 98361 31222026 ~ 31248677 (+) True XLOC_037235
TCONS_00073280 mRNA upstream 284334 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073289 mRNA downstream 138912 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073290 mRNA downstream 160354 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073292 mRNA downstream 356939 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073293 mRNA downstream 399654 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073296 mRNA downstream 674300 32069989 ~ 32071430 (+) True XLOC_037245
TCONS_00073282 other upstream 180636 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 331712 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073260 other upstream 1042708 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 1668786 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 1692040 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073288 other downstream 99959 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 170710 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 597622 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073304 other downstream 704514 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073307 other downstream 788366 32184055 ~ 32187252 (+) True XLOC_037247

Expression Profile

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