G1815731 (gbp)


Basic Information

Item Value
gene id G1815731
gene name gbp
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45965617 ~ 45996041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2077277
TTCAAGAATTCCCCATTGTCGTCTTTGAAGGATCGCTTCATGAATGCCTTTGTGGCCTGGGTCTCTGATTGAAGGTGGTTCTCTGACAGCTGATTGACGTCCACTGGGAATAAGGCCTTCACATCCTCCATTCCCTTCTGGTACACCGCCAGGCCCTCATTCACAGCAGCCTGGTTCTCAATTTTAGCCATGGCCAACACAGCATTCTCCAGACAGGGCACATTGCCTTTGGCTATGGTCTCCACATAGGTGGTGACCAAGTGGCCCAACACTGCAATTAGATAGAGGTGGGAGGAAAAACATGTGGCACTAAATATTTAGGAAAACCTCTCTCTTTTTCACATACTGTCCTGTAGGTGGATGTCTGACTCACTCTCTCCAGTCAATGTGTGTCCCCCTATAACAGTCTTCATACGGCTCTCCTGGAAAATAAAGCGGCAGAAAGTATCTGAGACCTCTCTGAAGCTTCCAGAAAGCTCAGCCTCGTCCATGGAGTCCAGTCGGTGCATGTTGTCAGGAGTTGTAGGGGAGGGGAACACAAAACACTTGCGTGAGGGGAAGAAGTTCCGGATGCACTCTCGC
>TU2077278
TTCAAGAATTCCCCATTGTCGTCTTTGAAGGATCGCTTCATGAATGCCTTTGTGGCCTGGGTCTCTGATTGAAGGTGGTTCTCTGACAGCTGATTGACGTCCACTGGGAATAAGGCCTTCACATCCTCCATTCCCTTCTGGTACACCGCCAGGCCCTCATTCACAGCAGCCTGGTTCTCAATTTTAGCCATGGCCAACACAGCATTCTCCAGACAGGGCACATTGCCTTTGGCTATGGTCTCCACATAGGTGGTGACCAAGTGGCCCAACATTTCTCCAGTCAATGTGTGTCCCCCTATAACAGTCTTCATACGGCTCTCCTGGAAAATAAAGCGGCAGAAAGTATCTGAGACCTCTCTGAAGCTTCCAGAAAGCTCAGCCTCGTCCATGGAGTCCAGTCGGTGCATGTTGTCAGGAGTTGTAGGGGAGGGGAACACAAAACACTTGCGTGAGGGGAAGAAGTTCCGGATGCACTCTCGCAGGAAGTTGTAGTCATTGATCTTTTTACTAGTACCTGAAAGATAACATTGACATTACTATATTTTATAGTACATGCAGATCTTGGGTGTGTCCCAATaatatctcctttctcctccatcctatcagagctcttgcagcatgaactgacatgttgtcaacccaatcaaaggatcggagaatgaatctagtactgataACATAAGCTACAGCTGGCTAGCACTACAGTGTATAAAGTGTGGTGATTaattgactcaaagagaaagacaatagtttaacagatttaaacaaatgtatttctttaaaaatgaaggagaagcgatagagtgatagagtgctACATCTTCTTATATTTTTTCTACCTTCACTTAGCTAGTGAATGCAGCTAGTTAGATTATCCTACTCAAACAACCAGCTAAAACAGCAAGGGATGCTATGTTACCCAGCTGAAtgtctatccaacactggaactcttccaatgtaagattttggttttattaatttattgccaccggggcccaccggtttaactgctaaactgcttgctgactgttaactgtaacgttactgcatgaatGTAGCTGATTTAGTAACACCTTACTTCtattaactacagtgccttgcgaaagtattcggccccct

Function

symbol description
gbp Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in gill. Orthologous to several human genes including FRAT1 (FRAT regulator of WNT signaling pathway 1).

NR:

description
guanylate-binding protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2077277 False 582 lncRNA 0.50 2 45965617 45996041
TU2077278 True 1119 lncRNA 0.44 2 45994821 45996041

Neighbor

gene id symbol gene type direction distance location
LOC110501932 LOC106582487 coding downstream 239223 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 377905 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 386711 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 421627 45533097 ~ 45543990 (-)
LOC118943614 gdf3 coding downstream 444785 45519847 ~ 45520832 (-)
LOC118943596 NA coding upstream 15074 46011115 ~ 46028506 (-)
ints6 LOC106582497 coding upstream 123347 46119388 ~ 46156972 (-)
spopla spopl coding upstream 873790 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 1046184 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 1090830 47086871 ~ 47103828 (-)
G1815703 NA non-coding downstream 22697 45942401 ~ 45942920 (-)
G1815705 NA non-coding downstream 26816 45938515 ~ 45938801 (-)
G1815751 NA non-coding downstream 31480 45933693 ~ 45934137 (-)
G1815750 NA non-coding downstream 33509 45931878 ~ 45932108 (-)
G1815747 NA non-coding downstream 36913 45928467 ~ 45928704 (-)
G1815781 NA non-coding upstream 13415 46009456 ~ 46009674 (-)
G1815899 NA non-coding upstream 32532 46028573 ~ 46028927 (-)
G1815902 LOC106582500 non-coding upstream 38073 46034114 ~ 46064332 (-)
G1815909 NA non-coding upstream 48294 46044335 ~ 46045898 (-)
G1815931 NA non-coding upstream 93611 46089652 ~ 46117078 (-)
G1815615 LOC106582489 other downstream 124635 45838750 ~ 45840982 (-)
G1814480 NA other downstream 1291729 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1412197 44473683 ~ 44553607 (-)
G1812404 NA other downstream 3287857 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 3360597 42603998 ~ 42605768 (-)
G1816841 NA other upstream 1229510 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1405081 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1475253 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2066008 48057851 ~ 48064453 (-)
G1817668 NA other upstream 2272746 48268787 ~ 48291496 (-)

Expression


Co-expression Network