G1815902 (LOC106582500)


Basic Information

Item Value
gene id G1815902
gene name LOC106582500
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46034114 ~ 46064332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2077470
GCAGTATCTTATTCCCGTCGTAGTCTTCAGTCTGCCAGCGTACCTCACTGATGGGGGTACAGGGGTACGGCAGGAGGGGCACCAACGCCCCAACGTCCCTCACCCTCAGCTCTATCACCGCCGACTCCGTAGGAGCGGGGCTCTGGCCCCTCGGCAACCGCTTGAATGACAGCTGGATCTCGGTATCCGGGTTGGAGTACACAACGAAAAAACAAAAGTCTTCTTTCCTCTGGGCCAGCTTCCTCTGGAGGATCATCCGGTACATGCGCACCATGTCCCGGAAGCTCTCGTAACGGCAGTAGACTGTGAAGCGTACAATCTCTTTTCCGTAGTGAACCTGGCGAACCGCCCACAGAGGAGTCCCCGGGGCCAGGGTGAAGAAGTCTTGGCTGCAGGGAGTAAGCGGGAGCATTCTACGGCCGTTGTTGACCCTCTCGGTGTGGTGGAAGTGCCAGGGGGGGCGCTGGAGAGCACGGTGTAACGTCACGATCTGATCCTCACCCCCGTACTGCTCCTGCAGGAAGAGGATGACGGCCAGCGCCGGCTGGCACTGCGGAGGGCCGTGATTGGCTGAAAAAGATGCCGAAGCATGACATGATTGGCGCTTGGGTTTTTGTTGCCAGGCGGCTCTCTCGGAGACGCGGAAGAGCTGCAGTTCAGGGTGGACCCAGGCCAGGACAGTGTCGGCAGCATGCTGCAGGGACTTGGCCTGGCCCGGGTCAGTAATGAGGTGAACACTGACCAGGAAGGGATCCTGCAGCTCCACCATGGATAACTCACCtctgctcgcTGAAGACATGGGACTGTAATC

Function

NR:

description
protein FAM124A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2077470 True 811 lncRNA 0.59 2 46034114 46064332

Neighbor

gene id symbol gene type direction distance location
LOC118943596 NA coding downstream 5608 46011115 ~ 46028506 (-)
LOC110501932 LOC106582487 coding downstream 307720 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 446402 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 455208 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 490124 45533097 ~ 45543990 (-)
ints6 LOC106582497 coding upstream 55056 46119388 ~ 46156972 (-)
spopla spopl coding upstream 805499 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 977893 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 1022539 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 1106071 47170403 ~ 47260466 (-)
G1815899 NA non-coding downstream 5187 46028573 ~ 46028927 (-)
G1815781 NA non-coding downstream 24440 46009456 ~ 46009674 (-)
G1815731 gbp non-coding downstream 38073 45965617 ~ 45996041 (-)
G1815732 NA non-coding downstream 40901 45962342 ~ 45993213 (-)
G1815772 NA non-coding downstream 51699 45981643 ~ 45982415 (-)
G1815931 NA non-coding upstream 25320 46089652 ~ 46117078 (-)
G1815949 NA non-coding upstream 66050 46130382 ~ 46130681 (-)
G1815962 NA non-coding upstream 105057 46169389 ~ 46170144 (-)
G1815963 NA non-coding upstream 107557 46171889 ~ 46172337 (-)
G1815978 NA non-coding upstream 131431 46195763 ~ 46229192 (-)
G1815615 LOC106582489 other downstream 193132 45838750 ~ 45840982 (-)
G1814480 NA other downstream 1360226 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1480694 44473683 ~ 44553607 (-)
G1812404 NA other downstream 3356354 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 3429094 42603998 ~ 42605768 (-)
G1816841 NA other upstream 1161219 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1336790 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1406962 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 1997717 48057851 ~ 48064453 (-)
G1817668 NA other upstream 2204455 48268787 ~ 48291496 (-)

Expression


Co-expression Network