XLOC_037585


Basic Information

Item Value
gene id XLOC_037585
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3130688 ~ 3132168 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075283
TTATTGCTGTTCTGGCGTGTTTGACTTCCAGTATGTGCAAAGCcagaatgtatttattttgtctcGGTCACGAGTCGTGAGAAAGACTGAAGTGTCGATTAATTTTGCTTCGTGAAATTATGCTTGTGTGTTTTTACCAGCATAAACGGGACTCCACATTCCCTGTACAGTCCCATGAGTTGCATTTTCAGAGCCAGTTTGAAGAAGAAAAGCTTTTGTTTCATAAAAGTGTGAGTGTGAAACATTTTGGGTGTTCAATTCCTCACACCACTAGAAAACATTCAGCTAATGAACATATTTCACACACTTCCACACAGAAATCACAGTTCTGTCATGTGTTTTTAACTTCATGTTTACCTCCGAACATTTTATTTATGGAACATAATTCGTAGAATATTAGGAACTGTTTAGTAAGTTTAAGTTGAGGGAACTCAAAAATCACCAATACAGTAGTCAACCTTTTAAGTGGATCAAAATattgtaattgtttaatttatgattaatgtaatacaaaatttataaaaaaatgatggCATATATTGTACAAATAGGAATATATTTCAACATGCATacctaatataataaatatgaaattcatatatattgtgcaaaattaatatattaatgtttaaaaaaatcttatttaagtataataatatttgtacattgtgaattatatttatgcatttattatttaatatataatttattcatgttaaaacttattcatatttatagaaaatgtgtattataatatatttcaacacacataaataatataaaaaagaaatgtataaataatgaTAGTGTACAttgtacaaatatttatatattttgatacacattttgtaaaaatatgaatatatttaaatatattgaatattataatatattaatatttaaatatattaatattgtaaC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006310 DNA recombination biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0033554 cellular response to stress biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005657 replication fork cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0030894 replisome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075283 True 921 lncRNA 0.25 2 3130688 3132168

Neighbor

gene id symbol gene type direction distance location
XLOC_037584 rapgef4 coding downstream 96563 2949272 ~ 3034125 (-)
XLOC_037583 zak coding downstream 185680 2896009 ~ 2945008 (-)
XLOC_037582 cdca7a coding downstream 238438 2879763 ~ 2892250 (-)
XLOC_037581 NA coding downstream 264234 2861221 ~ 2866454 (-)
XLOC_037580 NA coding downstream 349865 2777346 ~ 2780823 (-)
XLOC_037586 pdk1 coding upstream 2894 3135062 ~ 3149896 (-)
XLOC_037587 FP236594.1 coding upstream 21558 3153726 ~ 3154286 (-)
XLOC_037588 NA coding upstream 133400 3265568 ~ 3280451 (-)
XLOC_037589 NA coding upstream 226229 3358397 ~ 3395521 (-)
XLOC_037590 dlx2a coding upstream 265239 3397407 ~ 3400729 (-)
XLOC_037577 NA non-coding downstream 573381 2553874 ~ 2557307 (-)
XLOC_037576 NA non-coding downstream 740880 2382341 ~ 2389808 (-)
XLOC_037575 CU639436.1 non-coding downstream 793385 2330861 ~ 2337303 (-)
XLOC_037598 FP102171.1 non-coding upstream 1311750 4443918 ~ 4447104 (-)
XLOC_037602 NA non-coding upstream 1733932 4866100 ~ 4867439 (-)

Expression


Co-expression Network