XLOC_037590 (dlx2a)


Basic Information

Item Value
gene id XLOC_037590
gene name dlx2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3397407 ~ 3400729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073825
TGACAGACAATCACAGTTCTGCTTTGCGTCGCGGTTGTTTTCTTCCAAAGTGGAATAgtgcaacagaactcagaaaGCCTACTTAGTTTTGCGcctttgaagattttttttatggcTTCACTCTGTCGTTGGACTTGCTTTTAAGTGTGCTTTTGCGGTATGAAAAACATGACTGGAGTTTTTGACAGCCTCAGTACAGATATGCATTCGAACCAGATTACCTCCAGCAGTTACCACAGTCTGCACAAGTCCCAGGAATCGCCGACTCTTCCGGTCTCCACCGCTACCGACAGCAgctactacaataataataaccagCAGTGCGCTGGCTCTCCGTACGGCCAGATCAGCTCTTACCAGTACCAGAACAACAGCATGAACAGCGTCCAGTACAACACTAAATCATACGAGCTGGGCTTCGGAAACGCTTTCGGCCCCTACGGCACCTACGGCTCCTGCTCCTCACCAACTCCTGCAGATGCTGAAAAGGAAGAAAGCGAACCTGAAATCCGAATGGTCAATGGAAAGCCAAAGAAAGTCCGAAAACCTCGTACTATTTACTCGAGTTTCCAGCTGGCGGCCCTGCAGAGGAGGTTTCAGAAGACTCAGTATCTGGCCTTGCCGGAGAGAGCTGAGCTGGCCGCATCTCTGGGCCTCACGCAAACACAGGTTAAAATCTGGTTCCAGAATCGTCGTTCAAAGTTCAAGAAGTTGTGGAAAAGTGGAGAGATCCCACCCGAGCAGCATGTGGCCTCCAGTGAGTCTCCACCTCACCCCTCACCGCCTCTCGCCGCGGCCTGGGACTTCGCGCACAGCCAGAGAATGAACACTGTAAACTCGGGTTTGTCGCAGAGCAGCCCTCCCAACACAACCACCCCTTCCTTTCTGACAAACTACCCCTGGTATTCATCCACGAACTCTGCGGCCCACCTTCAGCCACCACTTCATCACAATACAACTGTTAGCGCCGGGACCATATTTTGACTCTGCCGACTTGGGGAACTCAGTTTGTGAACTGAACTTAAATGACTTTTAGGCCTGTTTGGCAGTCTTGAGTGGTGAGACCTCGATCTGCACCGATGCCACGTTGATCATTGCCAGTGCGATTTGGGCGTGACACTGTTACTTTTCATGCAATGTCGCGTCagcaagcagacactacagaatcaaacatatacaattatttttgtatttatttattttgttctatgAGTGGTACGTCTATGGATTAAAGTGAACTACAATTATCCAAAGCCTAGAGAACTCATGTGGACATTATTGGAGTAAATATTTGCAGCAGGGTGAATCAGAGCACATGTAGCACAACCTGAAGCTGTTTGGTGCCTTCTTGAAAATAACCTGACTTGTCGGTTTCCATGTGTTTCATGCGCCTGTCTTTactttcagatttgtttttgttcattttatattTAGTAGCCTATACGCAAGGTAAGTTGGAAATTTGGTGTCCGTCTTTGTATATGTCCCATCGCGTCTATTTAATAATGTTGTTATTCGTATAGGATATCATAAGAGTTTCACTGTTTAAACACTAATGAAAATCACACGCAAGCTACTGATTGTCCTAAAgtcatgtatatattttttttcctggagttctttgttttatttattttgaagccGAATGAACATCTCTGCCACTATAATGATTCagacttatttaaataaaatgtttcatgtgaa

Function

symbol description
dlx2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including neural crest cell development; pharyngeal system development; and skeletal system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; cranial cartilage; neural crest; pectoral fin bud; and pharyngeal arch. Orthologous to human DLX2 (distal-less homeobox 2).

GO:

id name namespace
GO:0046533 negative regulation of photoreceptor cell differentiation biological_process
GO:1902871 positive regulation of amacrine cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0014032 neural crest cell development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0060037 pharyngeal system development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-212 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including neural crest cell development; pharyngeal system development; and skeletal system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; cranial cartilage; neural crest; pectoral fin bud; and pharyngeal arch. Orthologous to human DLX2 (distal-less homeobox 2).

Ensembl:

ensembl_id ENSDARG00000079964

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073825 True 1704 mRNA 0.45 3 3397407 3400729

Neighbor

gene id symbol gene type direction distance location
XLOC_037589 NA coding downstream 1886 3358397 ~ 3395521 (-)
XLOC_037588 NA coding downstream 116956 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 coding downstream 243121 3153726 ~ 3154286 (-)
XLOC_037586 pdk1 coding downstream 247511 3135062 ~ 3149896 (-)
XLOC_037585 NA coding downstream 265239 3130688 ~ 3132168 (-)
XLOC_037591 cybrd1 coding upstream 90095 3490824 ~ 3496579 (-)
XLOC_037592 dcaf17 coding upstream 97648 3498377 ~ 3519717 (-)
XLOC_037593 gad1a coding upstream 221239 3621968 ~ 3653271 (-)
XLOC_037594 sp5a coding upstream 265672 3666401 ~ 3671911 (-)
XLOC_037595 myo3b coding upstream 298668 3699397 ~ 3866707 (-)
XLOC_037581 NA non-coding downstream 530953 2861221 ~ 2866454 (-)
XLOC_037598 FP102171.1 non-coding upstream 1043189 4443918 ~ 4447104 (-)
XLOC_037602 NA non-coding upstream 1465371 4866100 ~ 4867439 (-)
XLOC_037613 FQ377643.1 non-coding upstream 3008428 6409157 ~ 6409271 (-)
XLOC_037614 NA non-coding upstream 3130820 6531549 ~ 6548796 (-)
XLOC_037618 BX842683.1 non-coding upstream 3316948 6717677 ~ 6717801 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000350_01625265_01628425 DLX2A, DLX2 coding CI01000350 null 1625143 ~ 1628624 (+)