XLOC_037593 (gad1a)


Basic Information

Item Value
gene id XLOC_037593
gene name gad1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3621968 ~ 3653271 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073831
ATGGCGGCGTCtgcaccctcctcctcctcttctggCGGCGTTCCGGATCCCAACTCGACAAATTTACAGCCACCTTCCTCAATCGCTCATGGATGTACAAGGAAGCTTGGAATGAAGATATGTGGGTTCTTGCAGAAGAACAATAATGTTGACGACAAGGGTCGAATTGTCGGGTTGTTTAACGACCAGCAGCCCAGGAGTATTTTAACCCGGGACAACGAGCGAGATTCCCGCTTCAGACGCACAGAGACGGACTTCTCCAATCTGTATGCAAGAGTAAACCTCATCCTCACAGATCTGCTTCCTGCTAAAAATGGCGAGGAGTACACCATGCAGTTCCTGCTGGAGGTGGTGGAGATCCTCACTAACTACGTGCGCAAGACCTTCGACAGATCCACCAAAGTGCTGGACTTCCACCATCCACACCAGCTGCTGGAAGGCATGGAGGGCTTCAACCTGGAGCTGTGTGACCAGCCCGAGAGTCTGGAGCAGATCCTGGTGGACTGCAGGGACACTCTCAAATATGGAGTCCGGACAGGTCACCCAAGGTTTTTTAACCAGCTGTCTTCAGGACTAGACATCATCGGTTTAGCTGGAGAATGGTTGACCTCCACTGCCAACACCAACATgttcACGTATGAGATTGCGCCAGTGTTTGTCCTGATGGAGCAGCTCACACTGAAGAAGATGCGAGAGATTGTCGGCTGGCCGAACGGAGAAGGAGATGGCATTTTCTCACCAGgagGAGCCATCTCCAACATGTACAGCGTGATGGTGGCTCGATATAAACACTATCCTGAGATTAAAATCAAAGGCATGGCGGCGGCTCCCAGACTGGTGCTGTTCACCTCAGAACACAGTCACTACTCTATAAAGAAGGCCAGTGCAGTGTTGGGTTTCGGCACAGAGAATCTGATCCTGCTGAGAACGGATGAAAGAGGTCGAGTTATTCCAGCTGATTTGGAGGCCAAAGTCATTGACGCCAAGCAGAAGGGCTTTGTGCCGATGTTTGTGAACGCAACGGCTGGATCTACAGTGTACGGAGCCTTCGACCCAATCAATGAGATCGCCGACATCTGTGAGAAATACAACATGTGGCTTCACGTAGATggAGCGTGGGGTGGAGGTTTGCTGATGTctagaaaacacaaacacaagctcaGTGGCATTGAGAGAGCAAACTCCGTCACCTGGAACCCACACAAGATGATGGGTGTTCCTCTACAGTGCTCCGCCATTCTGGTCCGGGAGAAGggTCTTCTACAGGGCTGTAATTCCATGTGCGCTGGATATCTCTTTCAGCCGGATAAGCAGTATGACGTCACCTATGACACGGGGGACAAGGCCATACAGTGTGGCCGTCATGTAGACATCTTCAAATTCTGGCTCATGTGGAAGTCAAAGGGCACTACTGGTTTTGAGAAGCACATTGACAGGTGTCTGGAGCTGTCGGAGTATCTCTACCACAAGATCAAGAACAGAGAAGGATATGAGATGGTGTTTCAAGGGGAGCCACAGCACAcaaatgtatgtttctggtacATTCCTCCAAGCCTGCGGCTTCTGCCAGATGGAGAGGAGAAACGACATCGGCTTCATAAGgtcgCCCCAAAGATCAAGGCACTGATGATGGAGTGCGGGACAACAATGGTGGGCTACCAGCCTCAGGGTGAGAAGGTTAACTTCTTCAGGATGGTGGTCTCCAATCCGGCGGTTACCAGGTCTGACATTGACTTCCTGATCGATGAGATAGAAAGACTGGGACAGGATTTATAG
>TCONS_00073832
ACACTGGAGGTGATGGCGGCGTCtgcaccctcctcctcctcttctggCGGCGTTCCGGATCCCAACTCGACAAATTTACAGCCACCTTCCTCAAACTACGACTGGAGTGGAGTCGCTCATGGATGTACAAGGAAGCTTGGAATGAAGATATGTGGGTTCTTGCAGAAGAACAATAATGTTGACGACAAGGGTCGAATTGTCGGGTTGTTTAACGACCAGCAGCCCAGGAGTATTTTAACCCGGGACAACGAGCGAGATTCCCGCTTCAGACGCACAGAGACGGACTTCTCCAATCTGTATGCAAGAGATCTGCTTCCTGCTAAAAATGGCGAGGAGTACACCATGCAGTTCCTGCTGGAGGTGGTGGAGATCCTCACTAACTACGTGCGCAAGACCTTCGACAGATCCACCAAAGTGCTGGACTTCCACCATCCACACCAGCTGCTGGAAGGCATGGAGGGCTTCAACCTGGAGCTGTGTGACCAGCCCGAGAGTCTGGAGCAGATCCTGGTGGACTGCAGGGACACTCTCAAATATGGAGTCCGGACAGGTCACCCAAGGTTTTTTAACCAGCTGTCTTCAGGACTAGACATCATCGGTTTAGCTGGAGAATGGTTGACCTCCACTGCCAACACCAACATgttcACGTATGAGATTGCGCCAGTGTTTGTCCTGATGGAGCAGCTCACACTGAAGAAGATGCGAGAGATTGTCGGCTGGCCGAACGGAGAAGGAGATGGCATTTTCTCACCAGgagGAGCCATCTCCAACATGTACAGCGTGATGGTGGCTCGATATAAACACTATCCTGAGATTAAAATCAAAGGCATGGCGGCGGCTCCCAGACTGGTGCTGTTCACCTCAGAACACAGTCACTACTCTATAAAGAAGGCCAGTGCAGTGTTGGGTTTCGGCACAGAGAATCTGATCCTGCTGAGAACGGATGAAAGAGGTCGAGTTATTCCAGCTGATTTGGAGGCCAAAGTCATTGACGCCAAGCAGAAGGGCTTTGTGCCGATGTTTGTGAACGCAACGGCTGGATCTACAGTGTACGGAGCCTTCGACCCAATCAATGAGATCGCCGACATCTGTGAGAAATACAACATGTGGCTTCACGTAGATggAGCGTGGGGTGGAGGTTTGCTGATGTctagaaaacacaaacacaagctcaGTGGCATTGAGAGAGCAAACTCCGTCACCTGGAACCCACACAAGATGATGGGTGTTCCTCTACAGTGCTCCGCCATTCTGGTCCGGGAGAAGggTCTTCTACAGGGCTGTAATTCCATGTGCGCTGGATATCTCTTTCAGCCGGATAAGCAGTATGACGTCACCTATGACACGGGGGACAAGGCCATACAGTGTGGCCGTCATGTAGACATCTTCAAATTCTGGCTCATGTGGAAGTCAAAGGGCACTACTGGTTTTGAGAAGCACATTGACAGGTGTCTGGAGCTGTCGGAGTATCTCTACCACAAGATCAAGAACAGAGAAGGATATGAGATGGTGTTTCAAGGGGAGCCACAGCACAcaaatgtatgtttctggtacATTCCTCCAAGCCTGCGGCTTCTGCCAGATGGAGAGGAGAAACGACATCGGCTTCATAAGgtcgCCCCAAAGATCAAGGCACTGATGATGGAGTGCGGGACAACAATGGTGGGCTACCAGCCTCAGGGTGAGAAGGTTAACTTCTTCAGGATGGTGGTCTCCAATCCGGCGGTTACCAGGTCTGACATTGACTTCCTGATCGATGAGATAGAAAGACTGGGACAGGATTTATAG

Function

symbol description
gad1a Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within carboxylic acid metabolic process. Is expressed in brain. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1).

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016831 carboxy-lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-472 Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within carboxylic acid metabolic process. Is expressed in brain. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1).

Ensembl:

ensembl_id ENSDARG00000093411

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073831 False 1776 mRNA 0.51 16 3621968 3653259
TCONS_00073832 True 1788 mRNA 0.51 16 3621968 3653271

Neighbor

gene id symbol gene type direction distance location
XLOC_037592 dcaf17 coding downstream 102251 3498377 ~ 3519717 (-)
XLOC_037591 cybrd1 coding downstream 125389 3490824 ~ 3496579 (-)
XLOC_037590 dlx2a coding downstream 221239 3397407 ~ 3400729 (-)
XLOC_037589 NA coding downstream 226447 3358397 ~ 3395521 (-)
XLOC_037588 NA coding downstream 341517 3265568 ~ 3280451 (-)
XLOC_037594 sp5a coding upstream 13130 3666401 ~ 3671911 (-)
XLOC_037595 myo3b coding upstream 46126 3699397 ~ 3866707 (-)
XLOC_037596 ubr3 coding upstream 244861 3898132 ~ 4018452 (-)
XLOC_037597 mylka coding upstream 370979 4024250 ~ 4075620 (-)
XLOC_037598 FP102171.1 coding upstream 790647 4443918 ~ 4447104 (-)
XLOC_037587 FP236594.1 non-coding downstream 467682 3153726 ~ 3154286 (-)
XLOC_037585 NA non-coding downstream 489800 3130688 ~ 3132168 (-)
XLOC_037581 NA non-coding downstream 755514 2861221 ~ 2866454 (-)
XLOC_037602 NA non-coding upstream 1212829 4866100 ~ 4867439 (-)
XLOC_037613 FQ377643.1 non-coding upstream 2755886 6409157 ~ 6409271 (-)
XLOC_037614 NA non-coding upstream 2878278 6531549 ~ 6548796 (-)
XLOC_037618 BX842683.1 non-coding upstream 3064406 6717677 ~ 6717801 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000348_00094053_00112433 GAD1B, GAD1, GAD1A coding CI01000348 null 93689 ~ 112488 (-)