LOC110505912 (LOC106611380)


Basic Information

Item Value
gene id LOC110505912
gene name LOC106611380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40063662 ~ 40094072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962641.1
CACACATTACGTCATAGTTAGGTACAGGGTACTGTACAGTGCTATACGGCAGCAATCAAGTATATAAGAAGACTATTACTTGAATTGGTTTACAGAAGACGAAAACCCTGGTTAAAATAGTGATATTCTGAGATCCTGCATACAGGACAACAATGCCTCCTCCCGGTGTGTGTATGAGTATAATGCAGGAGCGCCACAAGAAAGAGGGTGTTGGGAGTCTTGCCAacccagagaaacacagcaaCCAAGACTTCCAGCAGCTGACGCAATACTGTTTGGCCAGGGGAGTGAGGTACATCGATGAGATGTTCCCCCCAGACCATAACTCCATTGGTGATGGGCTACTTTCCCCTGATAACATGGGCAGAGTGGTGTGGTTGAGACCAGCGAAAATGATACAGAATCCAGATTTTATCCTTGATGGACTTTCAAGGTTTGACTTTGGGCAAGGAATGGTTGGAGATTGCTGGTTTCTTGCTTCCATTGGGGCTTTGacgttccagaaggacatccTGGAACAAGTAGTACCCCTAAAGCAAAGCTTTAAAGAGGATTACTGCGGAATATTCCACTTCAGGTTCTGGAGGTTTGGGAAGTGGGTGGACGTTGTGATCGATGACAAGCTACCAACAGTTGACGGCAGGCTCATTTTTGTTCATTCAACAACTCCCAATGAGTTTTGGCCCGCCTTGCTGGAGAAAGCCTATGCCAAGGTGTGTGGCTCCTACGCAGACATGAATTTAGGGACCCCTGCAGAGGCTATGATGGACTTCACTGGAGGGGTTCACATCACATTCAAGCTCACTGACGCTCCACCAAATCTGTGGGACCTCCTGTTCAGAGCTGTCCAATCCAAATCTCTGATGGGGTGTAACACACCTCAAGGGGAAACATCAGCAAACACGGTGGCACCCAACGGATTAGTGAGGGGTCATGCCTACACCGTCACAGGGGTTAAACAGGTCATGAGCCAAGGCAGGCCAGTGAATCTGATCCGCCTCTTCAACCCCTGGGGCCggggagagtggaagggaggcTGGAGCGATAAGTCTTCCATGTGGCAAACAGTGAGTCCTGACGATCGGAAGATGTGTCTGTCAGTGAAAGAGGATGGGGAATTCTGGATGACAATGGAAGACTTCTGTAGGCACTTCACAGATGTGACTATCTGCTGTATGTGCCCTGATTTTCTCGACGGCAGCTCTAAAGGTCTTTGGACACACTCCTTACATGATGGCAGATGGGTTGCTGGAACCACTGCTGGAGGTTGCATGAATTTCCCAGACTGTTTCTGGACCAATCCCCAGTATCGGGTGAAGATCGAGGGATTAGACAGGGACTGCTCTGAGACACAGGGTGACAACAACATGTTGGTGTCTCTGATGCAGAAGCCTGACAAGAGAAACAGACGCCTGGTCAAAAGTCTCCACATCGGCATCAACATCTTCGAGGTGCCTGCCCAATTCAAAGGACAGAGGGGGAAGTTTCCTGCCGTCTTCTTCAACAACAATGTGCCTGTCGCCCAAACTAAGAACTACCTGAATGCTCGAACAGTGGTGGTGTTCTCCAGGCTGAAACCTGGTGAATACCTGATCGTGCCATCAGCCTTCAACCCAAATGAAACCGCCTCCTTCATCTTGTCCATCCTCTCCAAGGTGGAGACCCACATCCATGAAAACTCAAATGACCAAGATATTGTGGAAATCCCAAAGcCCATGCCTACTCACAATAGAGCAGATATGGACAACAAACAAACTCTGTTTCGGCAATATTCTGATCAGTTTGAGGAGGTGGATGCTGAACAGCTTCAGAGGATTCTACATGAAACTCTCCTCCAAGGATATGCAAAGAAAACTCAAGGCTTCAGCTTGGAGTCCTGTCGCAGCATGGTGGCCTTAATGGATACATCAATCACTGGAAAACTGAACAGTTCTGAATTTCTACATCTATGGAGAAAAGTTACCGTGTACAAGGATATCTTCTTACGTTCAGATGTGAACCGTTCCGGAATGTTGTCATTGAGTCAACTGAGGAACGCAATCATGGCTGCAGGGGTCAGGCTGAGTGACGGTCTGTTGAACCTCATTGCCCTGCGCTACGGTGGATCTTCTGGAAACATCAGCCTGGAGAGTTTCATCAGCCTCGTTCTACGCGTGGACCGCATGGCCAAAATATTCAGACAACTCAACGAGGGAGGGGCCATATCTCTTCGAGACAATGAGTGGATGTACATTACTATGTATGCATAAACAACAGACCAAATAGGATGGACAGAAGACCGTTAGAATAAGTAAGGTTTGAAAAAGTTCTACGGCGGTGCTTTGCTGGACAAATCAATAAACTTCTCCGTGACAA

Function

NR:

description
calpain-1 catalytic subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962641.1 True 2355 mRNA 0.48 22 40063662 40094072

Neighbor

gene id symbol gene type direction distance location
LOC110505911 LOC106611381 coding upstream 8405 40025021 ~ 40055257 (+)
LOC110505908 LOC106611383 coding upstream 79158 39983063 ~ 39984504 (+)
LOC110505907 LOC106611384 coding upstream 97209 39889646 ~ 39966453 (+)
LOC110505904 LOC106611378 coding upstream 205631 39777522 ~ 39858031 (+)
LOC110505903 LOC106611385 coding upstream 461421 39591070 ~ 39602241 (+)
LOC118944373 NA coding downstream 196763 40290835 ~ 40292060 (+)
LOC110505914 LOC106611394 coding downstream 198551 40292623 ~ 40310590 (+)
LOC110505913 LOC106611411 coding downstream 247574 40341646 ~ 40355958 (+)
LOC110505920 LOC106611413 coding downstream 262028 40356100 ~ 40364169 (+)
LOC110505926 LOC106611410 coding downstream 318057 40412129 ~ 40427679 (+)
G1982212 NA non-coding upstream 63286 40000046 ~ 40000376 (+)
G1982175 NA non-coding upstream 78856 39984542 ~ 39984806 (+)
G1982207 NA non-coding upstream 82495 39980673 ~ 39981167 (+)
G1982204 NA non-coding upstream 86524 39976735 ~ 39977138 (+)
G1982202 NA non-coding upstream 104760 39956357 ~ 39958902 (+)
G1982260 NA non-coding downstream 63279 40157351 ~ 40158169 (+)
G1982277 NA non-coding downstream 96875 40190947 ~ 40191568 (+)
G1982289 NA non-coding downstream 114868 40208940 ~ 40209278 (+)
G1982337 NA non-coding downstream 172212 40266284 ~ 40267025 (+)
G1982349 NA non-coding downstream 224149 40318221 ~ 40319301 (+)
LOC110505902 LOC106611388 other upstream 510170 39543907 ~ 39557667 (+)
G1981068 NA other upstream 968848 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 1489302 38565810 ~ 38575881 (+)
G1980792 NA other upstream 1534557 38528607 ~ 38529105 (+)
G1980026 NA other upstream 2333758 37721134 ~ 37729904 (+)
G1982355 NA other downstream 295586 40389658 ~ 40390407 (+)
G1983277 NA other downstream 953479 41047551 ~ 41047902 (+)
G1983387 NA other downstream 1121403 41215475 ~ 41216752 (+)
LOC110504259 LOC106603281 other downstream 1203634 41297432 ~ 41350749 (+)
G1983499 NA other downstream 1354330 41448402 ~ 41449340 (+)

Expression


Co-expression Network