LOC110504259 (LOC106603281)


Basic Information

Item Value
gene id LOC110504259
gene name LOC106603281
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41297432 ~ 41350749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962870.1
CTCCTGACACATACACTCCGCTCGGTTTATTGCACGAGGGAGTGAGTTAATTCGCTGGACGGTTTCtcctctctcccgtcctctccggtGTGAAGTTCAAGGCGTTTTGTGTTCcttctcaacaaaaaaaaaagaaatacggCAGACGTTTGTTATTGGTCGGTTGAGGACGTTACATCACTCCCGGTGATGACGCGGCCCGTGTCTTCCCGCATCCTTTCAGCCTTCCCGCGTCTTTAAGTGATTCTTGTCGCTCCACGAACCGCTCCAGCCTCCCGACGGTTAGTGAGAGAAACAACCGACGAAACGTTTCCTGTCTCTGAAggagactgtctctctctctctctctctctctccctccgctcgCCGCTGTCCAGAGAAATTATCATATTTAGCACACCGGTGAACGAACGACTTTTTGTTTTCTGTATTTTTGACGAAGAAGCTCAGTTTTCTTCTCGTCTAACGTTACCGAGACCCCTCGATATGTCCCTTTAGCTGCCCCTCGGAATGCCAGACCATGACAGTTCAGCCCTAAGCAGACAGACCAAGCGGCGCCGCGTGGACATCGGGGTGAAGAGGACTGTGGGTAGTGTAGTCTACGCTCAGAGAACCAGAGAGACCATCCTATTCAACACCATGAATCAATCCCACGGCCCCGAGCAGGACAGAGACTGCTCATTGGTCCCTCACAGTCACGGTGGGTCCAATGGGGACGGAGAGAAGTCCAACGTTCTCCGGAAGCTTCTGAAACGGGCTAACTCGTACGAAGACGCCATGATGCCTTACCCTGGCACCACCATCATCTCTCAGCTGCTGAAGAGTAACATGGGGAagaatggagacagagagggagcctTCCAGGGTAGTGGCGGTCTCTCCAGCGCTGGGTCAGATTTCCAAGCGGAGGATGTCTGCAGTAACTCCTCCCGAGACAGAGACAGCCCCCTCGCCCCCTCTcctgccccctcctccccctgcctccccccctTCGGccgcccccctcccccccacccctctctcacccctctggaCCTGGAGCGCCTCACGGACGAGCACCTGCGTGCCAAACGGGCCAGGGTGGAGAACATCATTCGGGGCATGAGCCATTCCCCCTGCGTTGCTCCACCTGCTCTCCatcccagagagagggacagggaccgAGAGAAAGGGAACAAGacggggagaagagaggacagggagaggaactGTCCCCCACTGCAGCCTCCCAGCCCTGGGTCTCTCtcaagagggggagaggggtacaGGGAGAGTCGGGGGGAGACTAGAGGCgaggtgtacagggagaacaagAGAAAGCAGCGTCTCCCCCAGCAGCAACAACAGTCCTTTACCCAGCTGGTGTGTGTCAGACAGGAGAAGAGGCAAGAGGAGAGACGACAACTCAAACTACAGCTAGAGGATATGCAGAAACAGCTTCGTCAGCTGCAGGAGAAGTTCTATCAGATCTATGAGACtgagacggaggaggaggaggaggaggaggaggaggaggagagagcaggaggaggggaggacgGAAACCTGTCAGAGAACAGCGTGCGCTCCGAcggtttggagaacacacacagggaccGCCGCGACAACCGTAACCGTGCCGACGGTATCTACGATGACCTGTCAGAGTTGGTTGACGACCCAGGTCTATTTCTGGACCGAGCCAGAGCACTGTTACGAGAACAGGCCCTGTTGGCtggagagaaggatgaggagggagagagggatgagggagagagggaaggggggaggaggCTGAAGAGGGATTGGGGCcaaggggagagaggggcaggaggGGGGCCAATGCGAGCAGAGGGGAGGCAGCTAGCTGAGACTCTAAAACAGGAGCTCAACTCTGCCATGTCACAGGTGGTTGACACCGTGGTTAAAGGGTTCAACCATAAACCACCCAGCCATTATCAACTTCAACACCATCCCTCTCATCACAGTGGCTCCCAAAACACCCCCTCTGCCACTAAAGCTCCCTCACaggcctccttccctcccttccccccctccctctccactgaCTCTCGCTTCGGGGGAGTCAACATGAACATGAATGGTGACAGCCCCAACTTTCACTCAGCCAATCAGAGGCTGCCGTGCTTTGGCGACGTCATCATCCCGAGCACGCTGGACTCGTTCGGGGGCCTCAGTGTTCCGACGGCCGGTGACCAGACAGAAGCGCTGCCTCTAGTGGTCAGGAAGACCAGCGCCGAACAACACCCACAGaacccctgtctccctcctcctcctcctcctcacccccaccacccctccctccattcctcccccctctctgcctctctggggttctcccctccctccttccgaCACCCCTTCCCCCTCCCACTGATGGGCTACCCTTTCCAGAGCTTCTCCAAAGACCAGCGCTCCTCCCCTGAGTCCATGGACCTCTCCAGGGAAACTGTGGGGCTGCGGACCAAGATGGGGTCGGGCGGGGGCGTCCATTTTgtctcccaccaccaccaccacaggcaGAGCTCTCCACCCCAACATGGAGGAGGGAGCGAGGGGCTGTCGCTCATCAAGTCAGAGTGTGGAGACCTTCAGGACATGGCTGATATATCTCCTTATTCAGGAAGTACTATCCAGGAGGGCTTGTCTCCCAACCATCTGAAGAAAGCCAAGCTCATGTTCTTCTACAGCAGATACCCTTCATCCAACATGCTCAAGACGTTCTTCTCAGACGTCAAGGTACGGCTCACCTGTCTTCTCCTCTGACATTTATT
>XM_036962871.1
tctcacTAACCCCCTACGTTTAGGTTGTGGCCGGTGTATTGTTTCCTCGGCAGtaggatatcagacagacagagagagctcgAACTACGTTTTTCCTGTTAGGATATGGTTTACAATGTGTCTTTTTAAACGCCATGTGACCCCTCGATATGTCCCTTTAGCTGCCCCTCGGAATGCCAGACCATGACAGTTCAGCCCTAAGCAGACAGACCAAGCGGCGCCGCGTGGACATCGGGGTGAAGAGGACTGTGGGTAGTGTAGTCTACGCTCAGAGAACCAGAGAGACCATCCTATTCAACACCATGAATCAATCCCACGGCCCCGAGCAGGACAGAGACTGCTCATTGGTCCCTCACAGTCACGGTGGGTCCAATGGGGACGGAGAGAAGTCCAACGTTCTCCGGAAGCTTCTGAAACGGGCTAACTCGTACGAAGACGCCATGATGCCTTACCCTGGCACCACCATCATCTCTCAGCTGCTGAAGAGTAACATGGGGAagaatggagacagagagggagcctTCCAGGGTAGTGGCGGTCTCTCCAGCGCTGGGTCAGATTTCCAAGCGGAGGATGTCTGCAGTAACTCCTCCCGAGACAGAGACAGCCCCCTCGCCCCCTCTcctgccccctcctccccctgcctccccccctTCGGccgcccccctcccccccacccctctctcacccctctggaCCTGGAGCGCCTCACGGACGAGCACCTGCGTGCCAAACGGGCCAGGGTGGAGAACATCATTCGGGGCATGAGCCATTCCCCCTGCGTTGCTCCACCTGCTCTCCatcccagagagagggacagggaccgAGAGAAAGGGAACAAGacggggagaagagaggacagggagaggaactGTCCCCCACTGCAGCCTCCCAGCCCTGGGTCTCTCtcaagagggggagaggggtacaGGGAGAGTCGGGGGGAGACTAGAGGCgaggtgtacagggagaacaagAGAAAGCAGCGTCTCCCCCAGCAGCAACAACAGTCCTTTACCCAGCTGGTGTGTGTCAGACAGGAGAAGAGGCAAGAGGAGAGACGACAACTCAAACTACAGCTAGAGGATATGCAGAAACAGCTTCGTCAGCTGCAGGAGAAGTTCTATCAGATCTATGAGACtgagacggaggaggaggaggaggaggaggaggaggaggagagagcaggaggaggggaggacgGAAACCTGTCAGAGAACAGCGTGCGCTCCGAcggtttggagaacacacacagggaccGCCGCGACAACCGTAACCGTGCCGACGGTATCTACGATGACCTGTCAGAGTTGGTTGACGACCCAGGTCTATTTCTGGACCGAGCCAGAGCACTGTTACGAGAACAGGCCCTGTTGGCtggagagaaggatgaggagggagagagggatgagggagagagggaaggggggaggaggCTGAAGAGGGATTGGGGCcaaggggagagaggggcaggaggGGGGCCAATGCGAGCAGAGGGGAGGCAGCTAGCTGAGACTCTAAAACAGGAGCTCAACTCTGCCATGTCACAGGTGGTTGACACCGTGGTTAAAGGGTTCAACCATAAACCACCCAGCCATTATCAACTTCAACACCATCCCTCTCATCACAGTGGCTCCCAAAACACCCCCTCTGCCACTAAAGCTCCCTCACaggcctccttccctcccttccccccctccctctccactgaCTCTCGCTTCGGGGGAGTCAACATGAACATGAATGGTGACAGCCCCAACTTTCACTCAGCCAATCAGAGGCTGCCGTGCTTTGGCGACGTCATCATCCCGAGCACGCTGGACTCGTTCGGGGGCCTCAGTGTTCCGACGGCCGGTGACCAGACAGAAGCGCTGCCTCTAGTGGTCAGGAAGACCAGCGCCGAACAACACCCACAGaacccctgtctccctcctcctcctcctcctcacccccaccacccctccctccattcctcccccctctctgcctctctggggttctcccctccctccttccgaCACCCCTTCCCCCTCCCACTGATGGGCTACCCTTTCCAGAGCTTCTCCAAAGACCAGCGCTCCTCCCCTGAGTCCATGGACCTCTCCAGGGAAACTGTGGGGCTGCGGACCAAGATGGGGTCGGGCGGGGGCGTCCATTTTgtctcccaccaccaccaccacaggcaGAGCTCTCCACCCCAACATGGAGGAGGGAGCGAGGGGCTGTCGCTCATCAAGTCAGAGTGTGGAGACCTTCAGGACATGGCTGATATATCTCCTTATTCAGGAAGTACTATCCAGGAGGGCTTGTCTCCCAACCATCTGAAGAAAGCCAAGCTCATGTTCTTCTACAGCAGATACCCTTCATCCAACATGCTCAAGACGTTCTTCTCAGACGTCAAGGTACGGCTCACCTGTCTTCTCCTCTGACATTTATT
>TU2267528
CCCGACGGTTAGTGAGAGAAACAACCGACGAAACGTTTCCTGTCTCTGAAggagactgtctctctctctctctctctctctccctccgctcgCCGCTGTCCAGAGAAATTATCATATTTAGCACACCGGTGAACGAACGACTTTTTGTTTTCTGTATTTTTGACGAAGAAGCTCAGTTTTCTTCTCGTCTAACGTTACCGAGACCCCTCGATATGTCCCTTTAGCTGCCCCTCGGAATGCCAGACCATGACAGTTCAGCCCTAAGCAGACAGACCAAGCGGCGCCGCGTGGACATCGGGGTGAAGAGGACTGTGGGTAGTGTAGTCTACGCTCAGAGAACCAGAGAGACCATCCTATTCAACACCATGAATCAATCCCACGGCCCCGAGCAGGACAGAGACTGCTCATTGGTCCCTCACAGTCACGGTGGGTCCAATGGGGACGGAGAGAAGTCCAACGTTCTCCGGAAGCTTCTGAAACGGGCTAACTCGTACGAAGACGCCATGATGCCTTACCCTGGCACCACCATCATCTCTCAGCTGCTGAAGAGTAACATGGGGAagaatggagacagagagggagcctTCCAGGGTAGTGGCGGTCTCTCCAGCGCTGGGTCAGATTTCCAAGCGGAGGATGTCTGCAGTAACTCCTCCCGAGAC
>TU2267527
CTGTGGGGCTGCGGACCAAGATGGGGTCGGGCGGGGGCGTCCATTTTgtctcccaccaccaccaccacaggcaGAGCTCTCCACCCCAACATGGAGGAGGGAGCGAGGGGCTGTCGCTCATCAAGTCAGAGTGTGGAGACCTTCAGGACATGGCTGATATATCTCCTTATTCAGGAAGTACTATCCAGGAGGGCTTGTCTCCCAACCATCTGAAGAAAGCCAAGCTCATGTTCTTCTACAGCAGATACCCTTCATCCAACATGCTCAAGACGTTCTTCTCAGACGTCAAGG

Function

NR:

description
LOW QUALITY PROTEIN: prospero homeobox protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962870.1 False 2774 mRNA 0.57 5 41297432 41350749
XM_036962871.1 False 2437 mRNA 0.58 5 41297993 41350749
TU2267528 False 662 TUCP 0.54 3 41297706 41310454
TU2267527 True 291 TUCP 0.55 2 41314147 41350715

Neighbor

gene id symbol gene type direction distance location
si:ch211-132f19.7 LOC106611404 coding upstream 406320 40868101 ~ 40891112 (+)
dnajc27 LOC106611405 coding upstream 437378 40829046 ~ 40860054 (+)
pomca LOC100510783 coding upstream 474606 40819696 ~ 40822826 (+)
snx9a LOC105031565 coding upstream 555693 40689188 ~ 40741739 (+)
LOC118944272 NA coding upstream 717774 40578668 ~ 40579658 (+)
LOC110505965 trim9 coding downstream 196622 41547371 ~ 41622795 (+)
LOC110505964 LOC106611459 coding downstream 285407 41636156 ~ 41666062 (+)
LOC110505960 LOC106611458 coding downstream 326595 41677344 ~ 41737128 (+)
LOC110505959 LOC106611457 coding downstream 389424 41740173 ~ 41757394 (+)
LOC110504274 LOC106611444 coding downstream 430522 41781271 ~ 41937779 (+)
G1983404 NA non-coding upstream 38636 41258504 ~ 41258796 (+)
G1983391 NA non-coding upstream 52156 41220680 ~ 41245276 (+)
G1983395 NA non-coding upstream 60442 41236632 ~ 41236990 (+)
G1983361 NA non-coding upstream 98590 41191975 ~ 41198842 (+)
G1983324 NA non-coding upstream 160706 41114402 ~ 41136726 (+)
G1983459 NA non-coding downstream 1278 41352027 ~ 41352336 (+)
G1983462 NA non-coding downstream 4330 41355079 ~ 41355421 (+)
G1983463 NA non-coding downstream 5074 41355823 ~ 41356031 (+)
G1983468 NA non-coding downstream 6674 41357423 ~ 41359264 (+)
G1983473 NA non-coding downstream 13935 41364684 ~ 41364930 (+)
G1983387 NA other upstream 80680 41215475 ~ 41216752 (+)
G1983277 NA other upstream 249530 41047551 ~ 41047902 (+)
G1982355 NA other upstream 907025 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 1743940 39543907 ~ 39557667 (+)
G1981068 NA other upstream 2202618 39036366 ~ 39094814 (+)
G1983499 NA other downstream 97653 41448402 ~ 41449340 (+)
G1983721 NA other downstream 712276 42063025 ~ 42103896 (+)
G1983777 NA other downstream 881491 42232240 ~ 42232904 (+)
G1983836 NA other downstream 911478 42262227 ~ 42262714 (+)

Expression


Co-expression Network