dnajc27 (LOC106611405)


Basic Information

Item Value
gene id dnajc27
gene name LOC106611405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40829046 ~ 40860054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962950.1
CTTCATAATGCATCTGCTGCCGCACATTAGATTCATTGACAGACAGGTTTTTGTTGTGCAAAACAGCGGAGCTGGCTATAATAGCACATGCAGGCTACCTATCCCATACGATGCATATTTCACTtgtccagattttttttttacgagCCCAGCTAATATTTTAGATGCAGCGGTGTATACTGTCGTTAACGATGGAGTAAATGTCCcgctagccagctaacgttaataAGGGACGTGCTAAACTAAGCTAAGCTAAGATTGAAATTCCAGCTGTCTTTTAACAGCCATCATCGAAGACGTAAATAACATATTTTAACATACTTGGTCAATCTCATTAGCATGGACTCAAATGTGCAGAAGAGACGTGAGAACAAGAAATCGCTCCGCGTGAAAGTGATCAGTCTTGGCAATGCCGAGGTGGGCAAGAGCTGCATCATCAAGCGATACTGTGAGAAGAGGTTTGTGCCCAAGTATCTGGCCACCATAGGGATCGACTATGGGGTCACCAAAGTTCAGGTGCGAGACAGAGAGATCAAAGTGAACATCTTTGACATGGCAGGACACCCCTTCTTCTATGAGGTACGTAATGAGTTCTATAAGGACAGCCAGGGGGTGGTGTTGGTGTATGATGTAGGTCTGAGGGAGAGTTTCGATGCGTTGGACAGCTGGCTGGGGGAGATGAAACAGGAGATGGGTTCCATGGTTAACATGGAGAGCATCGTCTTCGTTGTGTGTGccaacaagGTGGATCTGGTTAAGCGTCGTGTAGTAGACGAGGGAGTGGGCAGGCTGTGGGCGGAGTCTAGAGGGTTCCACTACTTTGAGACGTCAGCACAGAGCGGTGAGGGCATCAGTGAGATGTTTcaggcGTTTTTCTCCTCGATAACGGACATGTGTGAGAATGGTGGGAAGCGCCCGGTTGCGGAGGTCACTGTCGGCTTCACCAAGGAGCAGGCCGACACCATCCGACGCATACGCAACAGCAAGGACTCCTGGGATATGCTGGGGGTAAAACCTGGAGCCACACGGGAGGAGGTTAACAAGGCATACAGGAAGCTGGCTGTGCTGCTCCATCCGGATAAGTGCGTTGCCCCGGGCAGCGAGGATGCTTTCAAGGCCGTGGTGAACGCTCGCACCTCCTTGCTCAAGAACATCAAGTAGACACCGCCAACCAACGCCAGCTAGGGACTCCGGTCAATGCTCCACACGCCACATGGGCACCCTGACCCCTCGCCCCTAGAACGTCATTAGCCTTTTCTACCCTCTCCTAATCCCTTCTCCTAAaccttctccccccctccctgCTCTCCAACCCTCCCACCAGGTGCCATTACATTTTGCTACAACAGTGTTTTATAAAGTCACTACTGATGATG

Function

NR:

description
dnaJ homolog subfamily C member 27

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K19372 DNAJC27; DnaJ homolog subfamily C member 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962950.1 True 1376 mRNA 0.50 7 40829046 40860054

Neighbor

gene id symbol gene type direction distance location
pomca LOC100510783 coding upstream 6220 40819696 ~ 40822826 (+)
snx9a LOC105031565 coding upstream 87307 40689188 ~ 40741739 (+)
LOC118944272 NA coding upstream 249388 40578668 ~ 40579658 (+)
LOC110505917 LOC106611409 coding upstream 374252 40440430 ~ 40454794 (+)
LOC110505926 LOC106611410 coding upstream 403338 40412129 ~ 40427679 (+)
si:ch211-132f19.7 LOC106611404 coding downstream 8047 40868101 ~ 40891112 (+)
LOC110504259 LOC106603281 coding downstream 437378 41297432 ~ 41350749 (+)
LOC110505965 trim9 coding downstream 687317 41547371 ~ 41622795 (+)
LOC110505964 LOC106611459 coding downstream 776102 41636156 ~ 41666062 (+)
LOC110505960 LOC106611458 coding downstream 817290 41677344 ~ 41737128 (+)
G1982552 NA non-coding upstream 1206 40827641 ~ 40827840 (+)
G1982548 NA non-coding upstream 11880 40816904 ~ 40817166 (+)
G1982546 NA non-coding upstream 12917 40815854 ~ 40816129 (+)
G1982544 NA non-coding upstream 14502 40814342 ~ 40814544 (+)
G1982540 NA non-coding upstream 32504 40794788 ~ 40796542 (+)
G1983146 NA non-coding downstream 31969 40892023 ~ 40892718 (+)
G1983147 NA non-coding downstream 32745 40892799 ~ 40893131 (+)
G1983149 NA non-coding downstream 33168 40893222 ~ 40893455 (+)
G1983150 NA non-coding downstream 35446 40895500 ~ 40896302 (+)
G1983153 NA non-coding downstream 36450 40896504 ~ 40896719 (+)
G1982355 NA other upstream 438639 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 1275554 39543907 ~ 39557667 (+)
G1981068 NA other upstream 1734232 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 2254686 38565810 ~ 38575881 (+)
G1980792 NA other upstream 2299941 38528607 ~ 38529105 (+)
G1983277 NA other downstream 187497 41047551 ~ 41047902 (+)
G1983387 NA other downstream 355421 41215475 ~ 41216752 (+)
G1983499 NA other downstream 588348 41448402 ~ 41449340 (+)
LOC110505959 LOC106611457 other downstream 880153 41740173 ~ 41757394 (+)

Expression


Co-expression Network