LOC110505917 (LOC106611409)


Basic Information

Item Value
gene id LOC110505917
gene name LOC106611409
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40440430 ~ 40454794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962859.1
attgagagagacagtgaatgggaaggagagagtagagacgtgagagagagaaggagaatagaAGTTGTGTAGTTCTAGAGAAGGTATAGATAGGTTTAGGTAACCTTGTCCTCTGGAAATCTGGTGCACGACACTAGATTATAGGTCCAGACCACGACGTCACGATTTGTTATGATTAGACTTTGCTGTTTCAGCACTTCTTCCGCCGAGGAGTCAGTTGACTGGGAGTTCTTGGAGTTTTACGATCTAACCAGTCCGGTGACACCGCGAGAGAGGCGGTAAGCAGAGAGGGATAGTGAAAGCCgcagagagagatagtgaaagagGATCGCCTACTACTATGGCTCCGTTGCAGTTCGCGGTGTACTGGCGTCTCGCGCTCATATTCTTCTTCATGGCGTTTCTCTTCTTCCTCGACCTCTTCGCCGTTAGCAGAGCAACCTCCTCGTGCAATAACGTCCCGGGTGAGTTACCGGCCGCTAGTCGAACCTTTGGAGAAGTATCTTCTAGTGCCCATACACAGAACTGGACTACATGGGAGGTGCGCGAGGTAAACGGATCACTTTTACAGGTATTGTTACCGCAACAGGATGATATTACGGGTGGGAACGACACGGAAAGAGAGAATGGCACAGTGTGTATGGATCCGGAGGTGATGTCGTACAGTCAGACCATCTACATGACTGGCCTTCTGCTGGGATCTCTGTTCGGAGGAGCTATCTCTGACAgGTACGGTAAGCGAGCAGtgctgctggtgtgtgtgtgtgttaatgccgTGACTGCTGTGCTGCCGGCAGTCCTTCCTCAcgccctcctcttcctcaccctgCGCTGTTTGGCCGGGGTCTCCTGCTGCTGTATCAATATCTGCAGCTTCAGCCTGGgtgtggaaTGGAGTCTTCCCAGGTATCGTATTTGGCCCCCGGCCCTCCTGTCCTTCTCCTTCAGCCTGGGTATGATGGCGTTGGCACCGCTGGCGTACCTAACACACACCTGGACACAGCTACACCTGGGACTGGCCGTACCACAGatcctctgtctgcctctcttctattctatTCCTGAGTCTCCTCGCTGGCTGCTCctgaagaggagagcagagactCTGGAGGGGTATAGGAGACACAGTCCTGAGGACAAACGCTTTCTAGATctgTTGTTGGACACAGAGGGGAAGGACCTGCTGGAAGTccacctggagacacacacactggagactgGCACACCtgacaatgagacacacacactggagactgACACACCtgacaatgagacacacacactggagactgACACACCTGACAATGAGACACACCCACTGGAGACTGACAAACCTGACAATGAGACACACCCTCTTGAGACTGACACACCTGACAGTGAGACACACCCACTGGAGACTGACACACCTGACAATGAGACACACCCACTTGAGACTGACACACCTGACaataagacacacacaccaaaggcAGACACACAAACATGGGAGGAACACACACTTTCCCACTGCGGACACATGAGAAGTCCCACCATCCTACTGCGCCTGGTCATCTTGAGTTACATTGggctaGCATCAGCCCTGACGTACTACGGTATCTGTATGAATGTTGGGCGGTTCGGGGTGGATGTCTTCCTGGCTCAATTCTTCAGCGGCCTATCAGAGGCTCCCTGCCTGCTCGTCCCATTCCTATTGGCTCGCTGGGGCAGACGCCCAATTAGCATGCTATCCCTGTTCCTCAGTGGCTCCTTCTGCCTGCTGTCCCTGCTCGCATCACGCTTCTAcgctgtcccAGGGTTGGTGATAACTCTGGCCCTGGTGGGGAAGCTGTGTATGCAGACcactgtgtttgtctctgtacTCTACGGCATCGAACTCTTCCCTACGCTCATCAGGTGCTCAGCGGATGCCCCAGCTGACAAAGGCTGTCCATTCCTGGGAGACACAGACCCAGAGAAGCCCTCCCACAACCCACAGGATCTCAACTGACTCAAActgcacatactcacacacacacaccacaaacacacacatgctgtaGATACATGTATTTTAAGTTCCATGGTGCTCAGTTGGTACAGAACACAATAAACTGGGAGGTACTACCTGAACTTTGAACAATAAACATTGCAATACATTTTGCGACGTTCTGCCCTACTGAACAAGACCCTGGTTCTAGTGTTTTATAGGTTTGATCCTGTATCTCCCACAGCCTGTAGAGGCTTGCTGAGAGCGTGTTTAAACACAGACATGTCTGTGAGATGTGAGGAAACATTGCTAATGTAGCTAATGTATAAACAGCTCTGCACGAAGGTTCTGTGTGTGCAGTTTCTGTACGCGTGTGTTATCCTCGCACAATCATGAACCTTCCTTGCACCTTGCTGACATTTCTACACTGTTTCATGTCAAGTTGActtgagatggggggggggggggggctgtcttaTCATAAAGGGGGTGGTCTTGTTGCTGTATGTTTGTTATTGAAATCAGATGTGTGTAGTTATGTGTAGGAATGTTGTAATGTCTGGTGGCAGGGTCAGGCTGTTGAAATGACCAATTGTTTCCCATGATGTGCTGTTGTGTGTTCTTATAGGCATTTGACATGCTGAGGAATGTTCTCCTGTACAGTCTGTAGATTTCCTGTTCTTTGctattaaatgtaaaaaaaaaaatagaattttCAATTTCATAa
>XM_036962858.1
agagagacagtgaatgggaaggagagagtagagacgtgagagagagaaggagaatagaAGTTGTGTAGTTCTAGAGAAGGTATAGATAGGTTTAGGTAACCTTGTCCTCTGGAAATCTGGTGCACGACACTAGATTATAGGTCCAGACCACGACGTCACGATTTGTTATGATTAGACTTTGCTGTTTCAGCACTTCTTCCGCCGAGGAGTCAGTTGACTGGGAGTTCTTGGAGTTTTACGATCTAACCAGTCCGGTGACACCGCGAGAGAGGCGGTAAGCAGAGAGGGATAGTGAAAGCCgcagagagagatagtgaaagagGATCGCCTACTACTATGGCTCCGTTGCAGTTCGCGGTGTACTGGCGTCTCGCGCTCATATTCTTCTTCATGGCGTTTCTCTTCTTCCTCGACCTCTTCGCCGTTAGCAGAGCAACCTCCTCGTGCAATAACGTCCCGGGTGAGTTACCGGCCGCTAGTCGAACCTTTGGAGAAGTATCTTCTAGTGCCCATACACAGAACTGGACTACATGGGAGGTGCGCGAGGTAAACGGATCACTTTTACAGGTATTGTTACCGCAACAGGATGATATTACGGGTGGGAACGACACGGAAAGAGAGAATGGCACAGTGTGTATGGATCCGGAGGTGATGTCGTACAGTCAGACCATCTACATGACTGGCCTTCTGCTGGGATCTCTGTTCGGAGGAGCTATCTCTGACAgCTTCAGCCTGGgtgtggaaTGGAGTCTTCCCAGGTATCGTATTTGGCCCCCGGCCCTCCTGTCCTTCTCCTTCAGCCTGGGTATGATGGCGTTGGCACCGCTGGCGTACCTAACACACACCTGGACACAGCTACACCTGGGACTGGCCGTACCACAGatcctctgtctgcctctcttctattctatTCCTGAGTCTCCTCGCTGGCTGCTCctgaagaggagagcagagactCTGGAGGGGTATAGGAGACACAGTCCTGAGGACAAACGCTTTCTAGATctgTTGTTGGACACAGAGGGGAAGGACCTGCTGGAAGTccacctggagacacacacactggagactgGCACACCtgacaatgagacacacacactggagactgACACACCtgacaatgagacacacacactggagactgACACACCTGACAATGAGACACACCCACTGGAGACTGACAAACCTGACAATGAGACACACCCTCTTGAGACTGACACACCTGACAGTGAGACACACCCACTGGAGACTGACACACCTGACAATGAGACACACCCACTTGAGACTGACACACCTGACaataagacacacacaccaaaggcAGACACACAAACATGGGAGGAACACACACTTTCCCACTGCGGACACATGAGAAGTCCCACCATCCTACTGCGCCTGGTCATCTTGAGTTACATTGggctaGCATCAGCCCTGACGTACTACGGTATCTGTATGAATGTTGGGCGGTTCGGGGTGGATGTCTTCCTGGCTCAATTCTTCAGCGGCCTATCAGAGGCTCCCTGCCTGCTCGTCCCATTCCTATTGGCTCGCTGGGGCAGACGCCCAATTAGCATGCTATCCCTGTTCCTCAGTGGCTCCTTCTGCCTGCTGTCCCTGCTCGCATCACGCTTCTAcgctgtcccAGGGTTGGTGATAACTCTGGCCCTGGTGGGGAAGCTGTGTATGCAGACcactgtgtttgtctctgtacTCTACGGCATCGAACTCTTCCCTACGCTCATCAGacagAAGTGTGTGGGCTTGGTGTGTCTGTGTTACAGGGTGGGCTGTATCCTGAATGCGGTGATCAGTCCTAGAGGAGAAACCATCCCATTGGCTGCTATGATCCTTTATGGGAGTGGCCCCATTGTTGGGGCGGGACTGTGTCTGTTTCTACCGGAGACCAGTGGTGTGCCGCTCCCTGATTCGCTGGAGGACTGTGACAAACAGCCCAGTCTTCATCTACCAACCTTCCCTTCCCTTTGGTCTTCAGAGGGTGCTCAGCGGATGCCCCAGCTGACAAAGGCTGTCCATTCCTGGGAGACACAGACCCAGAGAAGCCCTCCCACAACCCACAGGATCTCAACTGACTCAAActgcacatactcacacacacacaccacaaacacacacatgctgtaGATACATGTATTTTAAGTTCCATGGTGCTCAGTTGGTACAGAACACAATAAACTGGGAGGTACTACCTGAACTTTGAACAATAAACATTGCAATACATTTTGCGACGTTCTGCCCTACTGAACAAGACCCTGGTTCTAGTGTTTTATAGGTTTGATCCTGTATCTCCCACAGCCTGTAGAGGCTTGCTGAGAGCGTGTTTAAACACAGACATGTCTGTGAGATGTGAGGAAACATTGCTAATGTAGCTAATGTATAAACAGCTCTGCACGAAGGTTCTGTGTGTGCAGTTTCTGTACGCGTGTGTTATCCTCGCACAATCATGAACCTTCCTTGCACCTTGCTGACATTTCTACACTGTTTCATGTCAAGTTGActtgagatggggggggggggggggctgtcttaTCATAAAGGGGGTGGTCTTGTTGCTGTATGTTTGTTATTGAAATCAGATGTGTGTAGTTATGTGTAGGAATGTTGTAATGTCTGGTGGCAGGGTCAGGCTGTTGAAATGACCAATTGTTTCCCATGATGTGCTGTTGTGTGTTCTTATAGGCATTTGACATGCTGAGGAATGTTCTCCTGTACAGTCTGTAGATTTCCTGTTCTTTGctattaaatgtaaaaaaaaaaatagaattttCAATTTCATAa
>XM_036962857.1
gagagacagtgaatgggaaggagagagtagagacgtgagagagagaaggagaatagaAGTTGTGTAGTTCTAGAGAAGGTATAGATAGGTTTAGGTAACCTTGTCCTCTGGAAATCTGGTGCACGACACTAGATTATAGGTCCAGACCACGACGTCACGATTTGTTATGATTAGACTTTGCTGTTTCAGCACTTCTTCCGCCGAGGAGTCAGTTGACTGGGAGTTCTTGGAGTTTTACGATCTAACCAGTCCGGTGACACCGCGAGAGAGGCGGTAAGCAGAGAGGGATAGTGAAAGCCgcagagagagatagtgaaagagGATCGCCTACTACTATGGCTCCGTTGCAGTTCGCGGTGTACTGGCGTCTCGCGCTCATATTCTTCTTCATGGCGTTTCTCTTCTTCCTCGACCTCTTCGCCGTTAGCAGAGCAACCTCCTCGTGCAATAACGTCCCGGGTGAGTTACCGGCCGCTAGTCGAACCTTTGGAGAAGTATCTTCTAGTGCCCATACACAGAACTGGACTACATGGGAGGTGCGCGAGGTAAACGGATCACTTTTACAGGTATTGTTACCGCAACAGGATGATATTACGGGTGGGAACGACACGGAAAGAGAGAATGGCACAGTGTGTATGGATCCGGAGGTGATGTCGTACAGTCAGACCATCTACATGACTGGCCTTCTGCTGGGATCTCTGTTCGGAGGAGCTATCTCTGACAgGTACGGTAAGCGAGCAGtgctgctggtgtgtgtgtgtgttaatgccgTGACTGCTGTGCTGCCGGCAGTCCTTCCTCAcgccctcctcttcctcaccctgCGCTGTTTGGCCGGGGTCTCCTGCTGCTGTATCAATATCTGCAGCTTCAGCCTGGgtgtggaaTGGAGTCTTCCCAGGTATCGTATTTGGCCCCCGGCCCTCCTGTCCTTCTCCTTCAGCCTGGGTATGATGGCGTTGGCACCGCTGGCGTACCTAACACACACCTGGACACAGCTACACCTGGGACTGGCCGTACCACAGatcctctgtctgcctctcttctattctatTCCTGAGTCTCCTCGCTGGCTGCTCctgaagaggagagcagagactCTGGAGGGGTATAGGAGACACAGTCCTGAGGACAAACGCTTTCTAGATctgTTGTTGGACACAGAGGGGAAGGACCTGCTGGAAGTccacctggagacacacacactggagactgGCACACCtgacaatgagacacacacactggagactgACACACCtgacaatgagacacacacactggagactgACACACCTGACAATGAGACACACCCACTGGAGACTGACAAACCTGACAATGAGACACACCCTCTTGAGACTGACACACCTGACAGTGAGACACACCCACTGGAGACTGACACACCTGACAATGAGACACACCCACTTGAGACTGACACACCTGACaataagacacacacaccaaaggcAGACACACAAACATGGGAGGAACACACACTTTCCCACTGCGGACACATGAGAAGTCCCACCATCCTACTGCGCCTGGTCATCTTGAGTTACATTGggctaGCATCAGCCCTGACGTACTACGGTATCTGTATGAATGTTGGGCGGTTCGGGGTGGATGTCTTCCTGGCTCAATTCTTCAGCGGCCTATCAGAGGCTCCCTGCCTGCTCGTCCCATTCCTATTGGCTCGCTGGGGCAGACGCCCAATTAGCATGCTATCCCTGTTCCTCAGTGGCTCCTTCTGCCTGCTGTCCCTGCTCGCATCACGCTTCTAcgctgtcccAGGGTTGGTGATAACTCTGGCCCTGGTGGGGAAGCTGTGTATGCAGACcactgtgtttgtctctgtacTCTACGGCATCGAACTCTTCCCTACGCTCATCAGacagAAGTGTGTGGGCTTGGTGTGTCTGTGTTACAGGGTGGGCTGTATCCTGAATGCGGTGATCAGTCCTAGAGGAGAAACCATCCCATTGGCTGCTATGATCCTTTATGGGAGTGGCCCCATTGTTGGGGCGGGACTGTGTCTGTTTCTACCGGAGACCAGTGGTGTGCCGCTCCCTGATTCGCTGGAGGACTGTGACAAACAGCCCAGTCTTCATCTACCAACCTTCCCTTCCCTTTGGTCTTCAGAGGGTGCTCAGCGGATGCCCCAGCTGACAAAGGCTGTCCATTCCTGGGAGACACAGACCCAGAGAAGCCCTCCCACAACCCACAGGATCTCAACTGACTCAAActgcacatactcacacacacacaccacaaacacacacatgctgtaGATACATGTATTTTAAGTTCCATGGTGCTCAGTTGGTACAGAACACAATAAACTGGGAGGTACTACCTGAACTTTGAACAATAAACATTGCAATACATTTTGCGACGTTCTGCCCTACTGAACAAGACCCTGGTTCTAGTGTTTTATAGGTTTGATCCTGTATCTCCCACAGCCTGTAGAGGCTTGCTGAGAGCGTGTTTAAACACAGACATGTCTGTGAGATGTGAGGAAACATTGCTAATGTAGCTAATGTATAAACAGCTCTGCACGAAGGTTCTGTGTGTGCAGTTTCTGTACGCGTGTGTTATCCTCGCACAATCATGAACCTTCCTTGCACCTTGCTGACATTTCTACACTGTTTCATGTCAAGTTGActtgagatggggggggggggggggctgtcttaTCATAAAGGGGGTGGTCTTGTTGCTGTATGTTTGTTATTGAAATCAGATGTGTGTAGTTATGTGTAGGAATGTTGTAATGTCTGGTGGCAGGGTCAGGCTGTTGAAATGACCAATTGTTTCCCATGATGTGCTGTTGTGTGTTCTTATAGGCATTTGACATGCTGAGGAATGTTCTCCTGTACAGTCTGTAGATTTCCTGTTCTTTGctattaaatgtaaaaaaaaaaatagaattttCAATTTCATAa

Function

NR:

description
PREDICTED: solute carrier family 22 member 13-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962859.1 False 2693 mRNA 0.50 9 40440430 40454794
XM_036962858.1 False 2796 mRNA 0.50 10 40440434 40454794
XM_036962857.1 True 2939 mRNA 0.51 10 40440435 40454794

Neighbor

gene id symbol gene type direction distance location
LOC110505926 LOC106611410 coding upstream 14722 40412129 ~ 40427679 (+)
LOC110505920 LOC106611413 coding upstream 76261 40356100 ~ 40364169 (+)
LOC110505913 LOC106611411 coding upstream 84472 40341646 ~ 40355958 (+)
LOC110505914 LOC106611394 coding upstream 129840 40292623 ~ 40310590 (+)
LOC118944373 NA coding upstream 148370 40290835 ~ 40292060 (+)
LOC118944272 NA coding downstream 123874 40578668 ~ 40579658 (+)
snx9a LOC105031565 coding downstream 234394 40689188 ~ 40741739 (+)
pomca LOC100510783 coding downstream 364902 40819696 ~ 40822826 (+)
dnajc27 LOC106611405 coding downstream 374252 40829046 ~ 40860054 (+)
si:ch211-132f19.7 LOC106611404 coding downstream 413307 40868101 ~ 40891112 (+)
G1982367 NA non-coding upstream 7109 40432012 ~ 40433321 (+)
G1982366 NA non-coding upstream 10029 40430010 ~ 40430401 (+)
G1982304 NA non-coding upstream 105079 40334582 ~ 40335351 (+)
G1982298 NA non-coding upstream 106683 40328577 ~ 40333747 (+)
G1982403 NA non-coding downstream 71060 40525854 ~ 40526773 (+)
G1982411 NA non-coding downstream 77341 40532135 ~ 40553006 (+)
G1982422 NA non-coding downstream 100742 40555536 ~ 40556034 (+)
G1982424 NA non-coding downstream 102910 40557704 ~ 40559014 (+)
G1982425 NA non-coding downstream 104332 40559126 ~ 40561124 (+)
G1982355 NA other upstream 50023 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 886938 39543907 ~ 39557667 (+)
G1981068 NA other upstream 1345616 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 1866070 38565810 ~ 38575881 (+)
G1980792 NA other upstream 1911325 38528607 ~ 38529105 (+)
G1983277 NA other downstream 592757 41047551 ~ 41047902 (+)
G1983387 NA other downstream 760681 41215475 ~ 41216752 (+)
LOC110504259 LOC106603281 other downstream 842912 41297432 ~ 41350749 (+)
G1983499 NA other downstream 993608 41448402 ~ 41449340 (+)
LOC110505959 LOC106611457 other downstream 1285413 41740173 ~ 41757394 (+)

Expression


Co-expression Network