G1982298


Basic Information

Item Value
gene id G1982298
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40328577 ~ 40333747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2266147
CTCCTGGATGGTTCCTTGAACGGTCCCAAACCGAGGAGAAGACAAAGGCCTTCCGGTTGTTGTCAAAGACTTGAAAGACGTTCATGAATTGGAGAATATTGTATCGTCCTTTAGGGTTGTTGCATTTCTCCAGGCAGGGAGAGTAGGTGGAGAAGAAGACGATGCATTGACCAGCATTACTACCAGCATTGTTTATCAGAGTCTGCATTGGGCTGAAGTTGTTATTATCACCACTCAAGAGACGGTACTCAGCATGGTCTATGTAAAGAGATGTTTTAAGAGGTGTGGCTGCGATGAGCCGGTTTCCTGTGTAGACCTTGTTATCATTAAGTGTGTTCTGGACAACCTGAGGTTGCACGCCTACATCAAAGATTGCTCCATTTTGGGAACACTGCTGTTGGGTGAGTAAGACAGCCATGGCATACTGGCGTTTCTCCAGGCCGAACCTTCTCATCTTTTGTACCACATTAGCCAAGACCTCTTGATCGATAGCATCCACCTTGCCTCCAGGCCAGAGAGACAGCAGAAAGAGAAGGACAATTCCCCTCATAGCTACACACACAGAGAGATTGTGGATGGCTGGTTATTGTCCTGTAGATTGTAGATGGCTGACTGATGTCCTCTAGATTGTAGATGGCTGACTGATGTCCTCTAGATTGTAGATGGCTGACTGATGTCCTCTATCCAAGACAAAACAGATGAAGGTTAACTGAAGTTATGGAAAACAAACTTAGACATGTTGTTTATTAAAAACAGCAGAAACACAGTTGTCACATTTAGTTCAGAGAGAAGGTACTAATTCACCCATGTACCTGTTGAAGGGTTGTTGCTGTGTCCATGTGAGCAGCGCTTTATAGTGGTTTTTATGTGTTAATATTTATCCAGAGAAGGTAGGGCAGAGGGAGGGGCAGAGGCTGCTGACCTCATTACCATATTTATccagggagggcagagggagagacaggtgatGCAATAGCCTTACTGGAAATAAACAGGTATTATtgatcctggttcgattccaagctgtaaatcaaatcaaatcaaatgttacttttcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataacc
>TU2266150
CTCCTGGATGGTTCCTTGAACGGTCCCAAACCGAGGAGAAGACAAAGGCCTTCCGGTTGTTGTCAAAGACTTGAAAGACGTTCATGAATTGGAGAATATTGTATCGTCCTTTAGGGTTGTTGCATTTCTCCAGGCAGGGAGAGTAGGTGGAGAAGAAGACGATGCATTGACCAGCATTACTACCAGCATTGTTTATCAGAGTCTGCATTGGGCTGAAGTTGTTATTATCACCACTCAAGAGACGGTACTCAGCATGGTCTATGTAAAGAGATGTTTTAAGAGGTGTGGCTGCGATGAGCCGGTTTCCTGTGTAGACCTTGTTATCATTAAGTGTGTTCTGGACAACCTGAGGTTGCACGCCTACATCAAAGATTGCTCCATTTTGGGAACACTGCTGTTGGGTGAGTAAGACAGCCATGGCATACTGGCGTTTCTCCAGGCCGAACCTTCTCATCTTTTGTACCACATTAGCCAAGACCTCTTGATCGATAGCATCCACCTTGCCTCCAGGCCAGAGAGACAGCAGAAAGAGAAGGACAATTCCCCTCATAGCTACACACACAGAGAGATTGTGGATGGCTGGTTATTGTCCTGTAGATTGTAGATGGCTGACTGATGTCCTCTAGATTGTAGATGGCTGACTGATGTCCTCTAGATTGTAGATGGCTGACTGATGTCCTCTATCCAAGACAAAACAGATGAAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611396

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2266147 False 1135 lncRNA 0.44 3 40328577 40333747
TU2266150 True 704 lncRNA 0.46 3 40328577 40333316

Neighbor

gene id symbol gene type direction distance location
LOC110505914 LOC106611394 coding upstream 17987 40292623 ~ 40310590 (+)
LOC118944373 NA coding upstream 36517 40290835 ~ 40292060 (+)
LOC110505912 LOC106611380 coding upstream 234505 40063662 ~ 40094072 (+)
LOC110505911 LOC106611381 coding upstream 273320 40025021 ~ 40055257 (+)
LOC110505908 LOC106611383 coding upstream 344073 39983063 ~ 39984504 (+)
LOC110505913 LOC106611411 coding downstream 7899 40341646 ~ 40355958 (+)
LOC110505920 LOC106611413 coding downstream 22353 40356100 ~ 40364169 (+)
LOC110505926 LOC106611410 coding downstream 78382 40412129 ~ 40427679 (+)
LOC110505917 LOC106611409 coding downstream 106683 40440430 ~ 40454794 (+)
LOC118944272 NA coding downstream 244921 40578668 ~ 40579658 (+)
G1982349 NA non-coding upstream 9276 40318221 ~ 40319301 (+)
G1982337 NA non-coding upstream 61552 40266284 ~ 40267025 (+)
G1982289 NA non-coding upstream 119299 40208940 ~ 40209278 (+)
G1982277 NA non-coding upstream 137009 40190947 ~ 40191568 (+)
G1982260 NA non-coding upstream 170408 40157351 ~ 40158169 (+)
G1982304 NA non-coding downstream 835 40334582 ~ 40335351 (+)
G1982366 NA non-coding downstream 96263 40430010 ~ 40430401 (+)
G1982367 NA non-coding downstream 98265 40432012 ~ 40433321 (+)
G1982403 NA non-coding downstream 192107 40525854 ~ 40526773 (+)
LOC110505902 LOC106611388 other upstream 775085 39543907 ~ 39557667 (+)
G1981068 NA other upstream 1233763 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 1754217 38565810 ~ 38575881 (+)
G1980792 NA other upstream 1799472 38528607 ~ 38529105 (+)
G1980026 NA other upstream 2598673 37721134 ~ 37729904 (+)
G1982355 NA other downstream 55911 40389658 ~ 40390407 (+)
G1983277 NA other downstream 713804 41047551 ~ 41047902 (+)
G1983387 NA other downstream 881728 41215475 ~ 41216752 (+)
LOC110504259 LOC106603281 other downstream 963959 41297432 ~ 41350749 (+)
G1983499 NA other downstream 1114655 41448402 ~ 41449340 (+)

Expression


Co-expression Network