G1983721


Basic Information

Item Value
gene id G1983721
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42063025 ~ 42103896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2267940
aacccactgttccccggccgtcattgaaaatacgaatttttttcttaaccgacttgcctagtttaaataaaggtaaaaaaaaaaaaatccggcctggattcgaaccggggACTAGTGACGGCTCTATcactgaggtgcagtgccttagacctcatTTTGCCGCCCGGCTAAGCAAGCAGCGTGACGTCCTTTTACAAATAGCTGAAACAGATCTGGGGACCACCGGGTTCATGTTCTTCTTTACAGCATGTACCGAGGAGAATGGAAGTTCTCAGCTGTCAAGTCAGTCTACGATTAAGCTTTCGTAGACTTGATCCTCACTGCTAATATTTTACTCTATAGATGTGTCAACAGCCAGATTTTCGTGCCACTAGGTGGCGTAATTGAACTAAGTGTAGACATGTGTTCAGTGATTACCACATGTTGATTGATCTGAAGTGATAATGGGTTCGACAGCTGTCCCCTCCAAATTGTTACTATAGTCATGTTACGGACAGTGAAAATGAATGACGTTGGGTTTgccctcattttgtctgtgtgTAAAGCATAGAAACAGTATCACATATTGCCaaagtttttttaaaaatttttcacatttattgaaaatgaaatacagatctCATTTACTACAAAAATTCACACCCCCCgagtcagtactttgtagaagcacctttgtcGGTGATTACATCTTTGAGTCGTCTTTGAGTAtttctgtatcagctttgcacatctggatttgggggtTTTCTACCGTTCGATGGGGAGTggtggtgaacagcaatcttcaagtctttccacggACTTTAAATGAAATACAAGTcagggctttggctgggccactcaaggactttcacattcttgttctgaagccattccaccgttgtgttggctgtgtgcttggtgtcattgtcctgtaGGAATGTAAATCTTCGCCCCCAGTCTAAGGTCATTTGTGCTCTGAAGCAGGTCCTCATGATTTgtctccattcattgttccctctccttcccaGTCTCCCGGCTGAAAAGCATCTCCATAGTATGacgttgccaccaccatgcctcacgGTAGGGATGATGTTAAACCGGTGATGAACTGTCTGGTTATCTCGAGACATAGCACTTTGCTTTCAGGCCAAagaacacattttatttttttctgtgtCAGACCACAATCTTTTCACTTGTGCCCTGATCACTTGTCTTTCACATGCCCTTTTTGGAAACTCCACGTGTGCTGTTGTACCTTTTACTCAGGAGTGGATTCCGTCTGCCcacttccataaagcccagattggtgaagcgCTTTGGAGACTCTTGTCCTTCCGGCAGgatctcccatctcagccaaggaactctgtagttctgtcaattggtttttggtcacctccctgaccagaggtgtaaaaatattttaaagtactacctaagtagtttttttttggggggggggttatctGTACTTCAATATTTATATTtaactacttttacttcacttcctaaagaaaatatgtactttttactccgtacaatttccctgacacctaaaagtgctcgttacattttgaatgcttagtaggacagaaaaatggtccaattcacacacaaaATCAAGGGAACGTCCCTGGTAAATCCCTACTGCCGCCTCTGATATGGCAGATATTCcctaaacacatgcttcatttgtaaattatgtctgaccgTGCCCCCGTCTATctgtacattaaaaaaaaaaaaaagtgccgTCTGGTTTTCTGAATTTGAAGTTATTTATAATTGTGATACTTAtgtttatttgagcaattacCTGTACTGGTTCTACTTAGGTACAGCatcttcagaaggtattcacaccccttgaccttttccacatgtggtgttgcagcctgaattttaaaaaaATTATGCAATTTgcgattttgtgtcactgacctaAACACACAgtagcccataatgtcaaagtggaattatgtttttagaaa

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2267940 True 1979 TUCP 0.42 2 42063025 42103896

Neighbor

gene id symbol gene type direction distance location
LOC110505968 LOC106591812 coding upstream 3667 42054118 ~ 42059358 (+)
LOC110498275 sos2 coding upstream 42872 41945499 ~ 42020153 (+)
LOC110504274 LOC106611444 coding upstream 125246 41781271 ~ 41937779 (+)
LOC110505959 LOC106611457 coding upstream 305631 41740173 ~ 41757394 (+)
LOC110505960 LOC106611458 coding upstream 325897 41677344 ~ 41737128 (+)
LOC110505972 pacs2 coding downstream 3655 42107551 ~ 42226673 (+)
LOC110505975 dcaf5 coding downstream 133399 42237295 ~ 42270066 (+)
LOC110504277 LOC105025529 coding downstream 180850 42284746 ~ 42418042 (+)
cn112 cn112 coding downstream 315211 42419107 ~ 42454007 (+)
LOC110506000 NA coding downstream 388077 42491973 ~ 42633124 (+)
G1983747 NA non-coding upstream 25183 42035315 ~ 42037842 (+)
G1983715 NA non-coding upstream 40498 42021408 ~ 42022527 (+)
G1983737 NA non-coding upstream 91869 41970588 ~ 41971156 (+)
G1983735 NA non-coding upstream 94957 41967776 ~ 41968068 (+)
G1983792 NA non-coding downstream 19885 42123781 ~ 42124291 (+)
G1983806 NA non-coding downstream 40974 42144870 ~ 42148110 (+)
G1983829 NA non-coding downstream 107358 42211254 ~ 42213112 (+)
G1983830 NA non-coding downstream 107983 42211879 ~ 42212504 (+)
G1983499 NA other upstream 613685 41448402 ~ 41449340 (+)
LOC110504259 LOC106603281 other upstream 712310 41297432 ~ 41350749 (+)
G1983387 NA other upstream 846273 41215475 ~ 41216752 (+)
G1983277 NA other upstream 1015123 41047551 ~ 41047902 (+)
G1983777 NA other downstream 128344 42232240 ~ 42232904 (+)
G1983836 NA other downstream 158331 42262227 ~ 42262714 (+)
LOC110505989 NA other downstream 619079 42722700 ~ 42728639 (+)
G1984581 NA other downstream 863520 42964604 ~ 42975274 (+)

Expression


Co-expression Network