LOC110505968 (LOC106591812)


Basic Information

Item Value
gene id LOC110505968
gene name LOC106591812
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42054118 ~ 42059358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962556.1
TGACTCTGGAACGCACCCATTTGGTTCCACCCGTTGACGTCATATTCGAGGCGTGTGCAGACTGTGCACTTCCTTTCAGGAGTTTTGTACAGTATTTTTAATCTCAACCCTGGTACATTCTTTTTGTATCTAACTTTAGGATTTGTTGAAAGACGTCCCTCTTTTGTCGAGGACATGGATTTCTCGCTGGCAGATGCCATAGCGGACGATGTCCCGGGCCAAGCTGAGAAAGCGAGTAACCCCAACCCAAccgcccctcctcctcccactaaCCCAGGATGGCCTGGTGCAGCTCCTGGAGCCCCAACACAGCCCTCTGCTCCTGGGGGATTCCCTGGGGGGCCACAGTCTGGTCCAGGGGCCCCAGGGCAGTTCCCTGGAAGCCAAGGACCCTTCTCTTCTGGTCCCGGAGCCCCAGGGCAGTATCCTGGAGCTCCCTCTGCCCCCGGTGGGTTCCCACCCGGACCAGGGGTACCGGGACAGTACCCAGCCGGGCCCGGAGCGCCGGGACAGTACCCAGCCGGGCCCGGAGCGCCTGGACAGTACCCAGCCGGGCCCGGAGCACCGGGACAGTTCCCTGGACAGTTCCCCCCTGGTGGGACCCCCGGTCATTTCCCTGGAGGCCCAATGCAGTACCCATCTGAACCCTTCCAGACTAGCCCTGGAGCACCCCCAGGACCCTACCCCAACGTGCCTTACCCAGGAGCCCAGCCTGGTGGGGGCATGTATGGGCCTGGAGGTCCAGGAGCTGCCTTCCCCCCTGGAGGAGGCACCTTCCCTGGGTTCCCTGGGGGGGCCTTCCCTCCAATCCCCCCTGGATCATGGAGTCCTGGGGGCGGTGGAGTTTTCCCTCCCCAGCCCGGTCACCCTGGCTCTTTCGGTCCAGGTCCCATGGGACCATATGGGGGATCGGCAGCTCCAGGAGGCATGTTGCCGGTGCCGTATGAACTGCCTCTCCATGCTGGCATCATGTCCAGGCTGTTGATCACCATTGTAGGGGAACCCATTGTTGGAGGAGAAAGGTTCCATGTTGACTTTTTaaaagaggaggacgaggaggacgaTGAAGAGGTTGTGTTCCACCTCAACCCTCGTTTCTATGAACAACAGGTTGTCCGTAACTCCCACCTGGATGGGTGTTGGGGtccagaggagagagatggaggcttCCCCTTCGTTCCTGGACAACGTTTTGAGCTGAAGGTGCTAGTGGAAGAGGACTCGTTTAAAGTAGCCGTGGATGGGAACCATTGTCTGGAGTATGAGCACCGAGCCGGAGGGTTTGAGGACGTCACCCTGCTGCGTGTGGTGGGGGATGTCACTCTCTACAGCGTGGCCCCAAGCATGATCTAACACTCGAGAGCGAGACTACCGcccagtcccaaatggcaccctattccgatAGGCTCTTGtcaaaaaaaagtagtgcactacatagggaatagggtgccatttgggatgtaagtCCAGTTCACTTCACCTGACTGACACTGTGGCCAATGATCTGGATGGGGGGGGGTGCAGCTCACATACCTCTTTTCACACTACCGTGCTGAACCAAACTGTGCTAGCTAGCATGGTTCCAGCAACTGTGGCGGATGGGTAATCAGGCCCGGCTCGGTTTAGCTCCGTGGTGTGAAAAGCCCTACACAGCATGTCCTGTAGGCTATAGGTAAAAAAAGAGATCTAATTATTTGACTGTGTCATTTAAAACGTGGTAGTAATCTATACAAACGAGGGCAAGGAACTAGGCTAAGTAACGGTATCGGAGAAGGAGATATCTGCTTTTTAACGGCAGTTCTAGGGAACGTAACCATATTTATTCTGCATGAAATGTCTCAAggacaaaagggggggggggcgtgtcCTTTTAGCATTTCACAATGTTGTCATGACGGCAGCGAAGTAGACTGTATattgtttttgtatgtctataatTACAAATGAGCCTTTCAGGGTTATGATGcatgttgtgtgtgcgtgtgtgtaaccaATGGACTGAACATCCGTGTAGCTTTTGCTTTGATACACTTTATTCTATTGCAATGCTGTCTGCAAGGCTGAATGGACATGGActagaaggatagagagagagagagagagagagagcctctgTGTACTGTAAGCTGGTCTAGGGTTCATTTAGCTAAGATCATAACAAATGCGTTTAGACATTTTACAGTATTAATCCTCTAGGTCTCGCCGATTTTACGGTCCGTTAAATGTTATGAAGTAGTCAGATCTGCAGCTAAAATTAAATGTAAACTGTCATAGGTAAATCAATGTATCACTTTGTAGATGTTACCAAAGACTTAAGTATTATTTTCAAAATGAAGTTTTGTCAATAAAGAATGAAGAGAGCTGATA
>TU2267928
GTGCAGACTGTGCACTTCCTTTCAGGAGTTTTGTACAGTATTTTTAATCTCAACCCTGGTACATTCTTTTTGTATCTAACTTTAGGATTTGTTGAAAGACGTCCCTCTTTTGTCGAGGACATGGATTTCTCGCTGGCAGATGCCATAGCGGACGATGTCCCGGGCCAAGCTGAGAAAGCGAGTAACCCCAACCCAAccgcccctcctcctcccactaaCCCAGGATGGCCTGGTGCAGCTCCTGGAGC

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962556.1 False 2367 mRNA 0.52 6 42054118 42059358
TU2267928 True 248 lncRNA 0.51 3 42054172 42054877

Neighbor

gene id symbol gene type direction distance location
LOC110498275 sos2 coding upstream 33965 41945499 ~ 42020153 (+)
LOC110504274 LOC106611444 coding upstream 116339 41781271 ~ 41937779 (+)
LOC110505959 LOC106611457 coding upstream 296724 41740173 ~ 41757394 (+)
LOC110505960 LOC106611458 coding upstream 316990 41677344 ~ 41737128 (+)
LOC110505964 LOC106611459 coding upstream 388056 41636156 ~ 41666062 (+)
LOC110505969 LOC106591813 coding downstream 337 42059695 ~ 42063783 (+)
LOC110505970 LOC106611462 coding downstream 21235 42080593 ~ 42092048 (+)
LOC110505971 LOC106611464 coding downstream 35719 42095077 ~ 42101228 (+)
LOC110505972 pacs2 coding downstream 48193 42107551 ~ 42226673 (+)
LOC110505975 dcaf5 coding downstream 177937 42237295 ~ 42270066 (+)
G1983747 NA non-coding upstream 16276 42035315 ~ 42037842 (+)
G1983715 NA non-coding upstream 31591 42021408 ~ 42022527 (+)
G1983737 NA non-coding upstream 82962 41970588 ~ 41971156 (+)
G1983735 NA non-coding upstream 86050 41967776 ~ 41968068 (+)
G1983726 NA non-coding upstream 105638 41948117 ~ 41948480 (+)
G1983761 NA non-coding downstream 13977 42073335 ~ 42073799 (+)
G1983764 NA non-coding downstream 16461 42075819 ~ 42076164 (+)
G1983792 NA non-coding downstream 64423 42123781 ~ 42124291 (+)
G1983806 NA non-coding downstream 85512 42144870 ~ 42148110 (+)
G1983829 NA non-coding downstream 151896 42211254 ~ 42213112 (+)
G1983499 NA other upstream 604778 41448402 ~ 41449340 (+)
LOC110504259 LOC106603281 other upstream 703403 41297432 ~ 41350749 (+)
G1983387 NA other upstream 837366 41215475 ~ 41216752 (+)
G1983277 NA other upstream 1006216 41047551 ~ 41047902 (+)
G1983721 NA other downstream 3667 42063025 ~ 42103896 (+)
G1983777 NA other downstream 172882 42232240 ~ 42232904 (+)
G1983836 NA other downstream 202869 42262227 ~ 42262714 (+)
cn112 cn112 other downstream 359802 42419107 ~ 42454007 (+)
LOC110505989 NA other downstream 663617 42722700 ~ 42728639 (+)

Expression


Co-expression Network