LOC110505969 (LOC106591813)


Basic Information

Item Value
gene id LOC110505969
gene name LOC106591813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42059695 ~ 42063783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962570.1
ttctgtttggttcctagtgaatacgtcccaggttgagaaccactggttgacagaagctgtttttcattttCTTTACGCTTCGGGACACAGGGTCAATGCGCCAAATTAGTTCGCAGCATCATCTGGgtCTGGGGTTTAACATCGTCGGAGGTCTGGACCAGCAGTATGTCCTGAATGACAGTGGGATATATGTGGCCAAAATCAAACAGAATGGAGCTGCAGCGCTGGATGGAAGATTACAAGAGGGAGACAAGATATTGGCGATAAATGACCACAAGCTGGAGAACCTGTCGCACAGTGCTGCGGTGGAGCTCTTCAGGTCAGCAGGAGAGGACGTGCAGCTTCGCGTACAGCAGAGGCCCACCATGGCCATGAATGGTCCCCCCAGTTCCAGACCTGACGGGGGCTCGTCTGTCTCCTCCTTGGGAATACTTGTGGCTGTCCTGGGAGCTGCTGCAGCCGTTACTGTCCTCTTCATGCGCTTTCAGCCACAACTGAGGAGGCATTTTTAAACCTATCTTTCTCCTCCAAAGCATTTTTAAAAGCAAAACCTAGAACACTTTGttgaaggccccccccccccaaaaaaaagaaaatatacagtaccagtgaaaaatTTGAActcatctactcattca
>XM_036962569.1
ACTTGCTTGTAAGCTTCACTCGCATTGCACTTTTGTAAACCTCTGTTTCCTGTTTGCACTTGACCGATAGAAACATTTCTGGTTGGTTCAATCAAAAGTCATGATAAGTAGAGCAGTAGATTGATGACCCGTCTGGGAAGTGTAGTTGTTGTAGTCCATCAGAGGGCAGCAAACTGCAGGAAGAGGACGAGGCAGGCagcagagatacacacacaactCCTGCATGAGTTCACCTTCACATTTATAACTacccccccctcccaaaaaaaACAGCTATTTAGCTTGTCCTTTGGGATTTCCTTACATCATGAACGGGTCAGCAAAGTATACTTCGCCTACAGTGCTGGGTATACAGTTGAAAAGAGGACCGCAAGgtCTGGGGTTTAACATCGTCGGAGGTCTGGACCAGCAGTATGTCCTGAATGACAGTGGGATATATGTGGCCAAAATCAAACAGAATGGAGCTGCAGCGCTGGATGGAAGATTACAAGAGGGAGACAAGATATTGGCGATAAATGACCACAAGCTGGAGAACCTGTCGCACAGTGCTGCGGTGGAGCTCTTCAGGTCAGCAGGAGAGGACGTGCAGCTTCGCGTACAGCAGAGGCCCACCATGGCCATGAATGGTCCCCCCAGTTCCAGACCTGACGGGGGCTCGTCTGTCTCCTCCTTGGGAATACTTGTGGCTGTCCTGGGAGCTGCTGCAGCCGTTACTGTCCTCTTCATGCGCTTTCAGCCACAACTGAGGAGGCATTTTTAAACCTATCTTTCTCCTCCAAAGCATTTTTAAAAGCAAAACCTAGAACACTTTGttgaaggccccccccccccaaaaaaaagaaaatatacagtaccagtgaaaaatTTGAActcatctactc

Function

NR:

description
PREDICTED: synaptojanin-2-binding protein-like

GO: NA

KEGG:

id description
K20057 SYNJ2BP, OMP25; synaptojanin-2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962570.1 False 638 mRNA 0.49 4 42059695 42063783
XM_036962569.1 True 881 mRNA 0.48 4 42060024 42063778

Neighbor

gene id symbol gene type direction distance location
LOC110505968 LOC106591812 coding upstream 337 42054118 ~ 42059358 (+)
LOC110498275 sos2 coding upstream 39542 41945499 ~ 42020153 (+)
LOC110504274 LOC106611444 coding upstream 121916 41781271 ~ 41937779 (+)
LOC110505959 LOC106611457 coding upstream 302301 41740173 ~ 41757394 (+)
LOC110505960 LOC106611458 coding upstream 322567 41677344 ~ 41737128 (+)
LOC110505970 LOC106611462 coding downstream 16810 42080593 ~ 42092048 (+)
LOC110505971 LOC106611464 coding downstream 31294 42095077 ~ 42101228 (+)
LOC110505972 pacs2 coding downstream 43768 42107551 ~ 42226673 (+)
LOC110505975 dcaf5 coding downstream 173512 42237295 ~ 42270066 (+)
LOC110504277 LOC105025529 coding downstream 220963 42284746 ~ 42418042 (+)
G1983747 NA non-coding upstream 21853 42035315 ~ 42037842 (+)
G1983715 NA non-coding upstream 37168 42021408 ~ 42022527 (+)
G1983737 NA non-coding upstream 88539 41970588 ~ 41971156 (+)
G1983735 NA non-coding upstream 91627 41967776 ~ 41968068 (+)
G1983761 NA non-coding downstream 9552 42073335 ~ 42073799 (+)
G1983764 NA non-coding downstream 12036 42075819 ~ 42076164 (+)
G1983792 NA non-coding downstream 59998 42123781 ~ 42124291 (+)
G1983806 NA non-coding downstream 81087 42144870 ~ 42148110 (+)
G1983829 NA non-coding downstream 147471 42211254 ~ 42213112 (+)
G1983499 NA other upstream 610355 41448402 ~ 41449340 (+)
LOC110504259 LOC106603281 other upstream 708980 41297432 ~ 41350749 (+)
G1983387 NA other upstream 842943 41215475 ~ 41216752 (+)
G1983277 NA other upstream 1011793 41047551 ~ 41047902 (+)
G1983777 NA other downstream 168457 42232240 ~ 42232904 (+)
G1983836 NA other downstream 198444 42262227 ~ 42262714 (+)
cn112 cn112 other downstream 355377 42419107 ~ 42454007 (+)
LOC110505989 NA other downstream 659192 42722700 ~ 42728639 (+)
G1984581 NA other downstream 903633 42964604 ~ 42975274 (+)

Expression


Co-expression Network