LOC110505971 (LOC106611464)


Basic Information

Item Value
gene id LOC110505971
gene name LOC106611464
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42095077 ~ 42101228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962568.1
GAACGTTTTTTGATAGGTCTGCAGGACTGGAACACGCCCACCACCCTTGGTGCTGATGAACATCCGGTTTCCTCATCTTTCTCTCACTCGGAGTCGCCATTTTGATACACATCAACCAAGCAAGCACACTACCAGAAGTAACGAAGACAACGGCAAGGaTAACTATGAGTGGATGTCGAGTGTTTATCGGTCGTTTGAGCCCTCATGCTCGTGAGCGGGACGTggagaagttcttcaaaggttaTGGAAGGATCCGGGAAGTAAATTTGAAGAACGGATTCGGCTTTGTGGAGTTTGACGACCACAGAGACGCTGATGATGCAGTTTACGAGCTGAATGgcaaggaactctgtagtgaaAGGGTGACTATAGAGCATGCTCGCTCCagaagagggaggggtggtggaccCGGGATGggcggcggaggaggaggaggaggacgtttCTCTCCTCGTTTCAGCAGCTACCGCCAGGGGTCTGGTGATCGCCGCGGTGGAGGTGGCGGAGGCTCCAGTAGGTATGGTCCTCCAGTGCGCACTGAGCACAGAATCATCGTGGAGAACCTGTCGTCGCGCATCAGTTGGCAGGACCTGAAAGATCTCATGAGGAAAGTTGGAGAGGTCACCTTTGTGGATGCCCACCGAACCAACAAGAATGAAGGGGTGGTGGAGTTCGCGTCACACAGTGATATGAAGAACGCCCTTGATAAGCTGGACGGAACAGACTTGAATGGACGAAAGCTGAAGCTGTCTGAGGATCGCAAGAGCCGCCGCAGCAGGAGTCGTTCCCGTGGCTCTCGCAGCTACTCCCGGTCCCGTAGCCGTTCCCGGTCCCCCCGTTCCAAGTCCCCCAGCCGCAGCAGGAGCCGTAATCGCTCCAGGAGCCCCCGCTCTGCCAGCCGTACTCCGGAGAAGAAGCCTTcctcaggaggaggaggagggggcagggcTGCACATCGCTCCACTTCACGTTCCCCCTCCCGTTCCAAATCTCGTTCCCGTACCCCTCCCGCACGTTCCCGCTCCCCTGCCCCCCGTTCCCGTACCCCTCCCCCACGCTCCCGCTCCCCTGCCCCCCGTTCCCGTACCCCTCCCCCACGCTCCCGTTCTCCTGCCCCGGCCCGGAAGCCGTCCCGGTCTCGGTCCCCCTCGGTGGAGAGCCAGCACTGAGCCGCTCTGAGGGGAGCTGTTGAGGAATAGTCCAGTGGAAGGAGTAGAGACTCGTTGGAGTGGAACACTGATAAAGTTCTGTTTGTTCCATACCAATGAGTCTGTCCTCCCGATTTTTAAAAGTGACCACCAGTCTCCACTGGTGTAGTGGTATGTATGGACTGAAGGGAATGTCATGCTGGAACCGTGGCACCTGGCGTtgtgccagcctgcctgcctgcctgctagtGGGTTGTAAATGAAGAGGAGCCTTGCCTTGGGTGTAATGCCCTCTCTCCCACAATCTAATTTTAAAATCTGAGCTTTAGTCCTGGTTGGTTCAGTTCCTCTTGGCCCTGGACTGGTTATTTTATGATTATAGGTTGGATCCTGCGTCCCCCCAATTCAACTTCTAATTTAGTCTTTTATTGCTATCTGAATAATTAAaaattttttctttcttttttttgttaaTGAAATGTACAGTGTGATTTGAGAGCTTTTGAttgggtcgctgtcctgttgAATATCTGTATCGTTGTCCCTGCAGGTTTGTAAGTCTCGTTGTGATTGATAAGTTGTATGAAATGTACAATTGTTTTGAAGTGAACTTTGTCTAATCAATacaatgttgtttttttcttcccttgtttttgtcttatctgTGTTCCAATCCACACTCTAATTAATAGTTAAGTTAAAATGCCACCAAAATGATTTGGATGGGTGTTGTGAAGTAATTTTATCTACTATTAGGTTTTTGTTGCTTTTTAACGATGATTGAGTATACTGAATAAGCATTTTGCAAATTAAGTGATTtttgtctttaaaaaaatatatatatataaacataagACTACAATTGCGTAGTCTAAACCA
>XM_036962567.1
ATCCGGTTTCCTCATCTTTCTCTCACTCGGAGTCGCCATTTTGATACACATCAACCAAGCAAGCACACTACCAGAAGTAACGAAGACAACGGCAAGGGTGAGGTTCAAATTTCGaTAACTATGAGTGGATGTCGAGTGTTTATCGGTCGTTTGAGCCCTCATGCTCGTGAGCGGGACGTggagaagttcttcaaaggttaTGGAAGGATCCGGGAAGTAAATTTGAAGAACGGATTCGGCTTTGTGGAGTTTGACGACCACAGAGACGCTGATGATGCAGTTTACGAGCTGAATGgcaaggaactctgtagtgaaAGGGTGACTATAGAGCATGCTCGCTCCagaagagggaggggtggtggaccCGGGATGggcggcggaggaggaggaggaggacgtttCTCTCCTCGTTTCAGCAGCTACCGCCAGGGGTCTGGTGATCGCCGCGGTGGAGGTGGCGGAGGCTCCAGTAGGTATGGTCCTCCAGTGCGCACTGAGCACAGAATCATCGTGGAGAACCTGTCGTCGCGCATCAGTTGGCAGGACCTGAAAGATCTCATGAGGAAAGTTGGAGAGGTCACCTTTGTGGATGCCCACCGAACCAACAAGAATGAAGGGGTGGTGGAGTTCGCGTCACACAGTGATATGAAGAACGCCCTTGATAAGCTGGACGGAACAGACTTGAATGGACGAAAGCTGAAGCTGTCTGAGGATCGCAAGAGCCGCCGCAGCAGGAGTCGTTCCCGTGGCTCTCGCAGCTACTCCCGGTCCCGTAGCCGTTCCCGGTCCCCCCGTTCCAAGTCCCCCAGCCGCAGCAGGAGCCGTAATCGCTCCAGGAGCCCCCGCTCTGCCAGCCGTACTCCGGAGAAGAAGCCTTcctcaggaggaggaggagggggcagggcTGCACATCGCTCCACTTCACGTTCCCCCTCCCGTTCCAAATCTCGTTCCCGTACCCCTCCCGCACGTTCCCGCTCCCCTGCCCCCCGTTCCCGTACCCCTCCCCCACGCTCCCGCTCCCCTGCCCCCCGTTCCCGTACCCCTCCCCCACGCTCCCGTTCTCCTGCCCCGGCCCGGAAGCCGTCCCGGTCTCGGTCCCCCTCGGTGGAGAGCCAGCACTGAGCCGCTCTGAGGGGAGCTGTTGAGGAATAGTCCAGTGGAAGGAGTAGAGACTCGTTGGAGTGGAACACTGATAAAGTTCTGTTTGTTCCATACCAATGAGTCTGTCCTCCCGATTTTTAAAAGTGACCACCAGTCTCCACTGGTGTAGTGGTATGTATGGACTGAAGGGAATGTCATGCTGGAACCGTGGCACCTGGCGTtgtgccagcctgcctgcctgcctgctagtGGGTTGTAAATGAAGAGGAGCCTTGCCTTGGGTGTAATGCCCTCTCTCCCACAATCTAATTTTAAAATCTGAGCTTTAGTCCTGGTTGGTTCAGTTCCTCTTGGCCCTGGACTGGTTATTTTATGATTATAGGTTGGATCCTGCGTCCCCCCAATTCAACTTCTAATTTAGTCTTTTATTGCTATCTGAATAATTAAaaattttttctttcttttttttgttaaTGAAATGTACAGTGTGATTTGAGAGCTTTTGAttgggtcgctgtcctgttgAATATCTGTATCGTTGTCCCTGCAGGTTTGTAAGTCTCGTTGTGATTGATAAGTTGTATGAAATGTACAATTGTTTTGAAGTGAACTTTGTCTAATCAATacaatgttgtttttttcttcccttgtttttgtcttatctgTGTTCCAATCCACACTCTAATTAATAGTTAAGTTAAAATGCCACCAAAATGATTTGGATGGGTGTTGTGAAGTAATTTTATCTACTATTAGGTTTTTGTTGCTTTTTAACGATGATTGAGTATACTGAATAAGCATTTTGCAAATTAAGTGATTtttgtctttaaaaaaatatatatatataaacataagACTACAATTGCGTAGTCTAAACCA

Function

NR:

description
serine/arginine-rich splicing factor 5-like

GO: NA

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962568.1 False 2027 mRNA 0.50 8 42095077 42101228
XM_036962567.1 True 1983 mRNA 0.50 8 42095138 42101228

Neighbor

gene id symbol gene type direction distance location
LOC110505970 LOC106611462 coding upstream 3029 42080593 ~ 42092048 (+)
LOC110505969 LOC106591813 coding upstream 31294 42059695 ~ 42063783 (+)
LOC110505968 LOC106591812 coding upstream 35719 42054118 ~ 42059358 (+)
LOC110498275 sos2 coding upstream 74924 41945499 ~ 42020153 (+)
LOC110504274 LOC106611444 coding upstream 157298 41781271 ~ 41937779 (+)
LOC110505972 pacs2 coding downstream 6323 42107551 ~ 42226673 (+)
LOC110505975 dcaf5 coding downstream 136067 42237295 ~ 42270066 (+)
LOC110504277 LOC105025529 coding downstream 183518 42284746 ~ 42418042 (+)
cn112 cn112 coding downstream 317879 42419107 ~ 42454007 (+)
LOC110506000 NA coding downstream 390745 42491973 ~ 42633124 (+)
G1983764 NA non-coding upstream 18913 42075819 ~ 42076164 (+)
G1983761 NA non-coding upstream 21278 42073335 ~ 42073799 (+)
G1983747 NA non-coding upstream 57235 42035315 ~ 42037842 (+)
G1983715 NA non-coding upstream 72550 42021408 ~ 42022527 (+)
G1983792 NA non-coding downstream 22553 42123781 ~ 42124291 (+)
G1983806 NA non-coding downstream 43642 42144870 ~ 42148110 (+)
G1983829 NA non-coding downstream 110026 42211254 ~ 42213112 (+)
G1983830 NA non-coding downstream 110651 42211879 ~ 42212504 (+)
LOC110505959 LOC106611457 other upstream 353478 41740173 ~ 41757394 (+)
G1983499 NA other upstream 645737 41448402 ~ 41449340 (+)
LOC110504259 LOC106603281 other upstream 744362 41297432 ~ 41350749 (+)
G1983387 NA other upstream 878325 41215475 ~ 41216752 (+)
G1983277 NA other upstream 1047175 41047551 ~ 41047902 (+)
G1983777 NA other downstream 131012 42232240 ~ 42232904 (+)
G1983836 NA other downstream 160999 42262227 ~ 42262714 (+)
LOC110505989 NA other downstream 621747 42722700 ~ 42728639 (+)
G1984581 NA other downstream 866188 42964604 ~ 42975274 (+)

Expression


Co-expression Network