LOC110505990 (LOC106611473)


Basic Information

Item Value
gene id LOC110505990
gene name LOC106611473
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42739235 ~ 42747065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585460.2
TGCCAGCCAATCAAATGGCCTATACTCCTGTTTTTTGAAACTTGCATATGTTGACCATAAGGCGCGACAAAATACAGAgtagattgtgtttgtgtgtaacgtTACTCGTTCAATTTAACGGGAGCTGATTCATTGAACGTGTTTCAGTGACACTGGCAAGCACATTGTTTTGTTTTTCGCTAAAACAAGAATAAAAAATGGACTTGGATTCCATGAAGTATGCCGAATTGCGCAGTCTTGCAAAGGAGGTTGGTCTCAAATCCTCCAAACTGAAGGCTGATAAACTCCTGAAGGCGCTCAGGGAGTATTTCCAACAACAACAAACGCAGGAAGATGTTGCAGTGGACCAGGGAGGTGAGACTGGTGTTGATGCACAGGATAACACGGTTAACAGCAACTCAACTCAGGATGAAAACAATTCAGCACTGGTTGATGAGCTGTCACCAAAACCTCCAGCTCGGGAGTTTGTGACCAAACGTCGTGGTAGAGGGCAACCGAAAATGAGGAAGGAGCCTGAAGATGAGGAGGCAGAATGTGACCCTGCCAAAGCGCCACTCACCCCGGCTGAGGTGACTGAATCCATCATCGGCGAAGGGAGTTCCAAGAGAAGGAGAGTGTCTGCTGCTAAGGATTCTGGGGTGGCTGTGCCTGAACCCGAACACAAAGTTACAGCAGTGATGTTCGGAGTGGGACAGAAGGTGGTGAAGCCAGTAGGAAAGATCCCTCGCCACGAGGGGCTCCTGAAGAGGACTAAGTCTATGTTGAAGCCTACTACACCAAACTTCAGAAAGCTCCACGAGGCGCATTTCAAAAAGATGGAGTCAATTGATTCATACGTGGACAGGAAGACCAGGAAAATGGATTCATTCAGGAATTCAGTGAATGAATTGAAGAGCTCAACCTCGAGCCGCGTCTCCCTGTTCAGCCCTGCATCCCAGAAACCAGTTCCCGACAGACGTAGACTTACCCAGGTTTCAGACAGCAAACCAGCTCCCGACAAACGTAGAATCTCGGCCAGAAAACCCCCCCAGAAGGACACTGTTGTCCCATTCAGACCCACAGTCTTGTCCACACGCCGGATCAACGTTCGGTTCTCTCAAGCTACTCAGGATAATGAGCACAAGAAGACTATGGCGAAGACGCCAGCACGCATGGCACCCCGCGTGGACCACCTCACTCCTGAGAAAGAGACTACGTTTAGAGGGAAATCTGAAGTCAACAAGACCTTTGTTCTCTCCAGCGCTAAGACACCAGCGTTTGTGTTTAATGCGAACACCAGTGTTCTTTCTAACTGTCCCGAAACCAACAAGAAGGCCAACTTCGATCTGAAGGCCAGTCTCTCTAAGACTCTCACCTATAAGCCTCATAAGGGAAAGCTGAAGCCATTCATGGTGGCCCAAGAGAACATGGTGGACCAGACCGTTCCCTCCCACCAGAAGAACTACAAACAGCATTCGGTTCAGACAAGggaggaaaggaggacaaAACAGACTGAAGACAGGAAGCAGAAGAAAGAGAAGGTGCTTGGAGCCAGACGAGGCCTCGTCTTGACCTGATTATTCTACACTTACTTTTGCTCTTGTGAAGTTTAAACTCTTTGTCATTTCAGACCTGCTGATTGATTCCTATTTCACTTTACCCTTTTCCTCTACTTTGACTTTCAGTTCcaacctgtttttgattttttttcgatttttctaTGAACTTATAACAACGtttaataaatgtttttattaactTTA
>XM_021585461.2
TGCCAGCCAATCAAATGGCCTATACTCCTGTTTTTTGAAACTTGCATATGTTGACCATAAGGCGCGACAAAATACAGAgtagattgtgtttgtgtgtaacgtTACTCGTTCAATTTAACGGGAGCTGATTCATTGAACGTGTTTCAGTGACACTGGCAAGCACATTGTTTTGTTTTTCGCTAAAACAAGAATAAAAAATGGACTTGGATTCCATGAAGTATGCCGAATTGCGCAGTCTTGCAAAGGAGGTTGGTCTCAAATCCTCCAAACTGAAGGCTGATAAACTCCTGAAGGCGCTCAGGGAGTATTTCCAACAACAACAAACGCAGGAAGATGTTGCAGTGGACGGAGGTGAGACTGGTGTTGATGCACAGGATAACACGGTTAACAGCAACTCAACTCAGGATGAAAACAATTCAGCACTGGTTGATGAGCTGTCACCAAAACCTCCAGCTCGGGAGTTTGTGACCAAACGTCGTGGTAGAGGGCAACCGAAAATGAGGAAGGAGCCTGAAGATGAGGAGGCAGAATGTGACCCTGCCAAAGCGCCACTCACCCCGGCTGAGGTGACTGAATCCATCATCGGCGAAGGGAGTTCCAAGAGAAGGAGAGTGTCTGCTGCTAAGGATTCTGGGGTGGCTGTGCCTGAACCCGAACACAAAGTTACAGCAGTGATGTTCGGAGTGGGACAGAAGGTGGTGAAGCCAGTAGGAAAGATCCCTCGCCACGAGGGGCTCCTGAAGAGGACTAAGTCTATGTTGAAGCCTACTACACCAAACTTCAGAAAGCTCCACGAGGCGCATTTCAAAAAGATGGAGTCAATTGATTCATACGTGGACAGGAAGACCAGGAAAATGGATTCATTCAGGAATTCAGTGAATGAATTGAAGAGCTCAACCTCGAGCCGCGTCTCCCTGTTCAGCCCTGCATCCCAGAAACCAGTTCCCGACAGACGTAGACTTACCCAGGTTTCAGACAGCAAACCAGCTCCCGACAAACGTAGAATCTCGGCCAGAAAACCCCCCCAGAAGGACACTGTTGTCCCATTCAGACCCACAGTCTTGTCCACACGCCGGATCAACGTTCGGTTCTCTCAAGCTACTCAGGATAATGAGCACAAGAAGACTATGGCGAAGACGCCAGCACGCATGGCACCCCGCGTGGACCACCTCACTCCTGAGAAAGAGACTACGTTTAGAGGGAAATCTGAAGTCAACAAGACCTTTGTTCTCTCCAGCGCTAAGACACCAGCGTTTGTGTTTAATGCGAACACCAGTGTTCTTTCTAACTGTCCCGAAACCAACAAGAAGGCCAACTTCGATCTGAAGGCCAGTCTCTCTAAGACTCTCACCTATAAGCCTCATAAGGGAAAGCTGAAGCCATTCATGGTGGCCCAAGAGAACATGGTGGACCAGACCGTTCCCTCCCACCAGAAGAACTACAAACAGCATTCGGTTCAGACAAGggaggaaaggaggacaaAACAGACTGAAGACAGGAAGCAGAAGAAAGAGAAGGTGCTTGGAGCCAGACGAGGCCTCGTCTTGACCTGATTATTCTACACTTACTTTTGCTCTTGTGAAGTTTAAACTCTTTGTCATTTCAGACCTGCTGATTGATTCCTATTTCACTTTACCCTTTTCCTCTACTTTGACTTTCAGTTCcaacctgtttttgattttttttcgatttttctaTGAACTTATAACAACGtttaataaatgtttttattaactTTA

Function

NR:

description
nucleolar and spindle-associated protein 1 isoform X2

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007049 cell cycle biological_process
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585460.2 False 1742 mRNA 0.47 11 42739235 42747065
XM_021585461.2 True 1739 mRNA 0.47 11 42739235 42747065

Neighbor

gene id symbol gene type direction distance location
LOC110505989 NA coding upstream 10780 42722700 ~ 42728639 (+)
LOC110505988 chp1 coding upstream 23502 42707664 ~ 42715733 (+)
LOC110505985 lgmn coding upstream 37280 42685032 ~ 42701955 (+)
LOC118944289 NA coding upstream 97611 42637762 ~ 42641624 (+)
LOC110506000 NA coding upstream 106111 42491973 ~ 42633124 (+)
LOC110504284 LOC106611474 coding downstream 3444 42750509 ~ 42767350 (+)
golga5 golga5 coding downstream 21378 42768443 ~ 42789971 (+)
trip11 trip11 coding downstream 50416 42797481 ~ 42855269 (+)
LOC110504345 LOC106611472 coding downstream 121916 42868981 ~ 42888144 (+)
zfyve26 LOC106611478 coding downstream 171872 42918937 ~ 43039187 (+)
G1984408 NA non-coding upstream 8135 42729724 ~ 42731100 (+)
G1984424 NA non-coding upstream 9403 42729486 ~ 42729832 (+)
G1984416 NA non-coding upstream 9846 42728866 ~ 42729389 (+)
G1984414 NA non-coding upstream 19225 42717575 ~ 42720010 (+)
G1984525 NA non-coding downstream 8262 42755327 ~ 42755672 (+)
G1984526 NA non-coding downstream 11745 42758810 ~ 42759175 (+)
G1984529 NA non-coding downstream 31510 42778575 ~ 42778929 (+)
G1984539 NA non-coding downstream 63527 42810592 ~ 42811138 (+)
G1984543 NA non-coding downstream 74932 42821997 ~ 42822476 (+)
cn112 cn112 other upstream 285412 42419107 ~ 42454007 (+)
G1983836 NA other upstream 476521 42262227 ~ 42262714 (+)
G1983777 NA other upstream 506331 42232240 ~ 42232904 (+)
G1983721 NA other upstream 635339 42063025 ~ 42103896 (+)
G1984581 NA other downstream 220351 42964604 ~ 42975274 (+)
G1984431 NA other downstream 295616 43042681 ~ 43043318 (+)
G1984764 NA other downstream 724491 43471556 ~ 43472009 (+)
G1984797 NA other downstream 826978 43574043 ~ 43574613 (+)
G1984803 NA other downstream 866483 43613548 ~ 43635501 (+)

Expression


Co-expression Network