Gene
RNA
| Item | Value |
|---|---|
| gene id | G2034880 |
| gene name | NA |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 46830334 ~ 46830621 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| VPS9 domain-containing protein 1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2327776 | True | 228 | TUCP | 0.55 | 2 | 46830334 | 46830621 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118936594 | LOC106562409 | coding | downstream | 24441 | 46796050 ~ 46805893 (-) |
| LOC118944395 | LOC106562409 | coding | downstream | 27406 | 46801419 ~ 46802928 (-) |
| LOC110506973 | LOC106562785 | coding | downstream | 34553 | 46751669 ~ 46795781 (-) |
| LOC118936598 | LOC107389132 | coding | downstream | 79637 | 46745374 ~ 46750697 (-) |
| LOC118944572 | NA | coding | downstream | 82813 | 46747394 ~ 46747521 (-) |
| LOC110506956 | LOC106562712 | coding | upstream | 270030 | 47100651 ~ 47118376 (-) |
| LOC110506955 | LOC106562779 | coding | upstream | 293951 | 47124572 ~ 47133453 (-) |
| LOC110506951 | LOC106562777 | coding | upstream | 306547 | 47136435 ~ 47333722 (-) |
| LOC110519573 | LOC106562775 | coding | upstream | 533011 | 47363632 ~ 47396784 (-) |
| LOC110506948 | LOC106562774 | coding | upstream | 571223 | 47401844 ~ 47498113 (-) |
| G2034872 | NA | non-coding | downstream | 10166 | 46818394 ~ 46820168 (-) |
| LOC110506963 | neo1 | non-coding | downstream | 18406 | 46808523 ~ 47019862 (-) |
| G2034865 | NA | non-coding | downstream | 26402 | 46803576 ~ 46803932 (-) |
| G2034862 | NA | non-coding | downstream | 42699 | 46786979 ~ 46787635 (-) |
| G2034855 | NA | non-coding | downstream | 57843 | 46771916 ~ 46772491 (-) |
| G2034905 | NA | non-coding | upstream | 61380 | 46892001 ~ 46892296 (-) |
| G2034946 | NA | non-coding | upstream | 155787 | 46986408 ~ 46986812 (-) |
| G2034971 | NA | non-coding | upstream | 203043 | 47033664 ~ 47033886 (-) |
| G2034984 | NA | non-coding | upstream | 216985 | 47047606 ~ 47047944 (-) |
| G2034987 | NA | non-coding | upstream | 219763 | 47050384 ~ 47051138 (-) |
| LOC118936480 | NA | other | downstream | 231819 | 46590380 ~ 46598515 (-) |
| G2034536 | NA | other | downstream | 549387 | 46276077 ~ 46280947 (-) |
| G2034336 | NA | other | downstream | 585742 | 46244052 ~ 46244592 (-) |
| LOC110506195 | LOC106562605 | other | downstream | 1014149 | 45810102 ~ 45825416 (-) |
| G2033970 | NA | other | downstream | 1070652 | 45754996 ~ 45759682 (-) |
| trip4 | trip4 | other | upstream | 747138 | 47504873 ~ 47579187 (-) |
| G2036102 | LOC106562708 | other | upstream | 1395116 | 48225737 ~ 48227597 (-) |
| LOC110487445 | tle3 | other | upstream | 1732256 | 48562877 ~ 48618892 (-) |
| smad3 | smad3 | other | upstream | 2486407 | 49317028 ~ 49341509 (-) |
