LOC110506195 (LOC106562605)


Basic Information

Item Value
gene id LOC110506195
gene name LOC106562605
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 45810102 ~ 45825416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963542.1
CAGGGTTGGCGGTGCATCATGGGAAATAAACCAACATGGGGACCTGATCCAAGTACCAAACCACCATGCAGTGCCTGCACAGTTTTTGATTAAGGAAAACGAACAATGATTATCATCATAACCTCATGCTAAAGAGAAGTGGTTATAAAGTTTCAGGACTAAACAGATGAACTTGACGGCGCCTAGTAATCTATGGTCCGGGAGAATGTGATTGTTTTGTCCGGCGCCGCGCTCGTATGTGTGCCTACTGCTTCACAAAGCGCCATCGGGGAAGTGCATCACTCCCAGCCTTCGACGGATGATGGACCGGAATTACCCGAATTCCAGTTTCGCAGACCCGCTGGCTCCACCAGCACAGACCGTAGCCTGGGCCTATGAGCGGAGCACCGCAAGCATAAAGCCAAGTGCCAGTTATGGTGCCACACACCTGGAGTCGGAGCTCCTCCATCGGCAGACCTACGCCTGCACCCAGCTGCCCACCTACACCACTACCCATCACCCTACAGGTCTGTCGGGGGGGTTTGACTCAGGCACTAACACTACTGAGACCTCTGTCATGAACTTCCTGTCGGCCATGGAGTCTAGAGCCCTGCAGCAGGCTGGTCCTGTCGGGGCCTCTCTGCTCCCCCCCTTTAGGACCACCACGTGGCAGACCGGCGCCAACCCCACCACAGAGCTGTTCCTCACCGGTGCCCTTCCTACCAGCGCCACATTCCCCTACcctgcccccctctcctcttatcaGCACCCTAGTGCCTTCCCCTCGCGGAGCTACGCCACCAGcccctccctggccctccagGACCACGCCTTCAGCACCTCCACCAACGGCCTGCTCTCCTCCCACCTCGACCCCCTGCTGCAGCTTAAACCCAGCCAGGCCACGCTACCTACCTCCCTGGCCTTCGACCgcctccccaccccctccctgGGCACCGCCCTCCCTCCCCAGTCATCCACATATCGCTCGGCCCAGGAGTCGGCCCCTCACCTCCTGCAGCCCCAGTTTGGGCTACTGCCCTTGGCTACCCAGTCAGCCCCCCAGCCTTACGGGGTGCCCGTCTTCTCGGGCTCCATCGAGAGAGCACTCCAGCGGGAATGTAGTGTGATCAAGCACCACCAGAGGCCTTCTAGCAGCAGCCACACTGTCTCGGAGCAGCTGCCTGGCTTGCAGCATTCCCTGCAGGGCTACCTCGGCTCAGGCAGCGGGGAGGGGGATGGCTCCTTCCAGCAGGACCCCTCAAGGCAGACCACAGTGCCCTGCAGCACCTCCATGGGGACGGACTCCTCCCAGGGGGTCAACGGTGCGCAGCAGCCTAAGACGGGTGTGCAATCTCAGGcctacccctcctccatcccctccccctcTGGGTACTGCTCGTCCTCCACGGGTGCCAAGACTAAAGACTGTTCTTCCAAACTGGCCCCAGATGGCGGACCCCAGTCACAGGGTGGATCTCCAGAGAGCTACCCCTCCCCAGGGCAGGGGCCTGGGTTGAAGCATGGTTCGGTGATTGCCAGCCAACAGACTCAACCATACACATCGGCCCCGCTACCCAGTCTGCTGTCCACTCTCAGCCACTCTCAGAGTTACATCACCTCCCAGGcttactcctcttcctcctcagaccTCCTCAGGCCTTCTCTCTATAAGACTCTGCCCTCCTTCTCTGGCCATTCAGGCAATGTAGcgtctgtcagtcagtccctgGTCTACTGCTCCagccctgggcagagccaggaggaTGTGGGCcagtacagagcccaggttcagggCCTGTGTCTGGGCAACCCCTCTCAGAGCTCCCCTGCCAGCCACTCTCAGGGTGCCCCTAACGTGAGCTACCTGTCTCAGGGGCAGGCTTCGGTCACTCAGTCTCAGAGCTACGCCGCAGGACAATCCCTCAGCGCCCCCTACCCCTCCGCCATCGCCCAGAGGTTACCCACATCAATATCGGGCCAGGGCTACACCCCCTTCTCTTCAGCCCCTCCCCTCGCCTTACAGAACAACTGCAGAGCCTCAGTACAGGACCTAAAGCCAGCCTACTGCAAACTGAAACTGGAAGGAGAGATCCCCATCGAGGACCTCCAGGCTCTCCAGCAGGTCTCTTTAGAAACCTCCAGCCTGGGGGGCAGTGACAATGTGGTCTACGTAGTCTCCAAAATGGATGACCGTTACAACACTCAGAGTGTGATCCGGAGCAACTCGCGAGCCGAAGACCAGCTCATAGGCACAAAGACTAGGACCAACGCCCAGCTCATGTCTTCCCATGAGGAGCTCAAACAGCACTCACTCCTGCTCAAAGGGCCCGAGCCACGGCAACAAAATCACCAGGCCAACGCCCAGTCTGCCCTGAACCACACCCAGAACCAGTACATCAGGGTCCCCAACTCTCAGGTTCTACTGGAGCCTAATCGGGACCAGCAGATGGTCCTGATCCAACAGCCTCTCATCCACTGTGGTCTCAACCCTTCCAAGGTGCAGCTGACCCCGGGGTCAGGCCAGGTCCAGTACCTTCACATGGAGGGAGATCATCTGATCAGCGTTAGCCTTAATGGTAGCCAGAGCCAGCCTGGGGCAGTAGGACAGAACACCATCACGGACTCCTCCATACTGCACCTCTCTTCGCCAAAAGACCCTTACAGTCAGTCGACCAATCAGCAGCAGTCGCAGGACGCTAAGCACCATTTCGCCCTGAGCTCCATCTGCTTCCCAGAGTCCATGCTGCTGGCGGACGAGAGGAACATCCTGTCCAACGTGGATGACATCCTGGCTGCCACGGCAGCCGCCTGCGGTGTCACGCCACAGGACTTTGTCAAAGCCACGTCCGGTGCTGCTGAGGGCGGCATGCCCGACCCCAAGGGTCATTTCCAGACTGGGGACACCAGACACCAGTCACCTAGTttctcctcttcatcttcccAGACCTCCATCATCACCAACACTAACTCCCATAACACCATGACCCTGACACTCAATGGCTCTCCTATGAGCTCAGACGGACACCAGTTTCCTAAAGGGGAGGGGCATCTGGGGCAACAGTACTCAATGTCACACTCGCACACCACTGTAGTCGACCCCAGGCACGACATGGGCGCCGACAAAGGTTTGCTACGGAAGCCCGGAGACGAGCCAAACAACATTTCACCCAAAGGACAGTCTGTTTACCTTAGCAACAGGGCCGATGGCAACCCCAACGGAGGCCACTCTGAGAATGAGTACCACCTGGCTGGCCTGGGGTACGACCCCTCAGGGAACCTCAACAGAGGCAAGGCCAATAAGCAGAACCCCAAAGGGTCCAAAGTCATCAAGAGAGAAGACGGCCTTGACGAGTGTCCCTCTTCTGACGGCTTTGTCAACCCCAAAAAGAGGGTGCGCTCCAAGGCTTCGGCCAAGCCACCCGTTCCAGAGGAAGAGAACATCCAACCAAGGAAGAAGACAGTCCAGGCCAAGAGGCAGAACTCCCGGGGCAGCGACCCCACCAGCTCCCCTTCCACCTCGGAGGCGGCCTACGACAGCTACCAGCAGCAGGAGAGGATGAGGCAGAAGATCCGTGAGGTGGAGGAGCAACAGCCAGAGGTCAAAACAGGCTTCATCGGCTCCTTTCTGGACTTCCTCAAGTCAGGTCCCAAACAGCACTTCTCCTCATCCCCCGTACGGACCCCCAGTCGCTCCCGCAGGCCCTCAGCTTCGTCCAAGCGGCCACTGTGCGCCATACCGCCTCTACCTCTGAAAATACAACCCCCATCAGCCCCGTTGATAGGCGATGAGGGCCTTGGGGTTGCGGGGAGCTCTCAGCAGCAGCGTCTGGAGGAAGAGCTCCAGAAGAACCTGGAGACACTGCCATCATTCAGCTCAGACGAGGATGAGAGCAGCGCTGGAAAGAACCAGGCCCTCCAGAACAGCATCAGCTCAGCCCTGTCGGCCCTGGACGAGCCctcagacaggacacacacagcgGACAACAGACTCTCCAACTCTCCCCTGAAGCCAGACCAGGCTCCCAGCATGCCTCACTCAGCCTCCAAAGCCCAGGAGCAGCAGACGGATGCACCGAAGGAGTCCTCGACAACCGTCTTGTCATCATCGGTGACTGGGTCGTCGGGGCAGGAGGGGGCGAAACCGGCCCCCCCAGGCCAGCTGGCCGTCCAGCTGACCAGCGTGGCCATAGAAGGACTGACGGACGAAGAACTGTCGGACAGCGGGGGAGAGGGCATGTACCGCGAGAGGGACGAGTTTGTGGTCAAAAACGAGGACACCGGGAGCCTgaaggtgacaTTGACAGCCGGACAGGAACCCCCAGCCATCTGGAAGGTCCAGAAAGCTCTGCTGCAGAAGTTTGTCCCTGAGCTGAGGGACAGCAAGAGAGTGTTCTCAGCCACTAACAGTTATCTGGGCTACTTTGGTGACGCTAAGACCATGTACAGGAGGGTGTACGTCAAGTTCCTGGACACGGTCAACAAGAAGGAGTACGTCCGGGTCTGTAACCGCAAACCCCGCTGCAAGCCCATGTCCTCCATGAGAGGCTGTCAGGCGAAGACACTGCTCGGTCTGAAGACTCCTCCCCGCTCAGTGAACTCTGACCCTCTCGCCACGCCCACATCACAGAAGTCCCAGTCCAAGCCTCGCACCAAGCAGCCCAAGACCAAGGCAGAGCCCCCGCCCaagaagaggaggaagtggaaggagtactctccgtctccctctgagTCCTCTCCTGAGGATGAGGCTGAAGATGATGagtTCACTCCTCCAGTGCCGTTTTCCTCTCGGTTCCTCAACACCAGGACCATGAAGGAGACGTTTAAGAGCTTTGTAGAGCTGTTGATCAGCGTCGCCCTGGATGCAGACGTGATGAGCGCTCTGGAGAGGGAGAACGATGAGCTGTTGCTGCCCCACATGAAGAGAGTGGACGGGATGATCTGGGACAACAGGAGACGCCTGCTGCCCAGACTACGAGTGGGACAAGTCTTTAAGACGGCGCTGGACAGCTTCCCAGAGATCTCCGTGGTAACAGAGCTCAACAAGGATGGGGAGACTCCAGCCTTTAAGGTGCGGCTCAGTGGGAAGGCCTACAACAGGAAGAACATGAAGCCTTCCAAGTCCCCCAGCAAACTGCCCCTGgaaTACACAGTGGACCAGCAGAAACCACAGTGGTTCTCCCTCTACCATTCTCTACAGCATTACAAGTACCACACATACCTCATGTGTCAGGAGGAGATTGCGTCATTGCGGGTGCAGGCTGGTGACATGGGGCAGGAGGAGACGGTGCAGCTGTGCATGAGGAACGGAGCCTGGGTGGAGGGCCTGTTCGACCGCTTCGGAGAGCTCCTCAACCAGGTGCAGCAGGCCTGCCTATAGCACAgactaagagggagagagagagctggagggagagaggcctgCCTATAGCACAgactaagagggagagagagagctggagggagagaggcctgCCTATAGCACAGactaagagggggagagagagctggagggaga
>TU2326675
GGACAGCTTCCCAGAGATCTCCGTGGTAACAGAGCTCAACAAGGATGGGGAGACTCCAGCCTTTAAGGTGCGGCTCAGTGGGAAGGCCTACAACAGGAAGAACATGAAGCCTTCCAAGTCCCCCAGCAAACTGCCCCTGgaaTACACAGTGGACCAGCAGAAACCACAGTGGTTCTCCCTCTACCATTCTCTACAGCATTACAAGTACCACACATACCTCATGTGTCAGGAGGAGATTGCGTCATTGCGGGTGCAGGCTGGTGACATGGGGCAGGAGGAGACGGTGCAGCTGTGCATGAGGAACGGAGCCTGGGTGGAGGGCCTGTTCGACCGCTTCGGAGAGCTCCTCAACCAGGTGCAGCAGGCCTGCCTATAGCACAgactaagagggagagagagagctggagggagagaggcctgCCTATAGCACAgactaagagggagagagagagctggagggagagaggcctgCCTATAGCACAGactaagagggggagagagagctggagggagagaggcctgCCTATAGCACAGactaagagggggagagagagctggagggagagaggcctgCCT
>TU2326672
AAGAACTGTCGGACAGCGGGGGAGAGGGCATGTACCGCGAGAGGGACGAGTTTGTGGTCAAAAACGAGGACACCGGGAGCCTgaaggtgacaTTGACAGCCGGACAGGAACCCCCAGCCATCTGGAAGGTCCAGAAAGCTCTGCTGCAGAAGTTTGTCCCTGAGCTGAGGGACAGCAAGAGAGTGTTCTCAGCCACTAACAGTTATCTGGGCTACTTTGGTGACGCTAAGACCATGTACAGGAGGGTGTACGTCAAGTTCCTGGACACGGTCAACAAGAAGGAGTACGTCCGGGTCTGTAACCGCAAACCCCGCTGCAAGCCCATGTCCTCCATGAGAGGCTGTCAGGCGAAGACACTGCTCGGTCTGAAGACTCCTCCCCGCTCAGTGAACTCTGACCCTCTCGCCACGCCCACATCACAGAAGTCCCAGTCCAAGCCTCGCACCAAGCAGCCCAAGACCAAGGCAGAGCCCCCGCCCaagaagaggaggaagtggaaggagtactctccgtctccctctgagTCCTCTCCTGAGGATGAGGCTGAAGATGATGagtTCACTCCTCCAGTGCCGTTTTCCTCTCGGTTCCTCAACACCAGGACCATGAAGGAGACGTTTAAGAGCTTTGTAGAGCTGTTGATCAGCGTCGCCCTGGATGCAGACGTGATGAGCGCTCTGGAGAGGGAGAACGATGAGCTGTTGCTGCCCCACATGAAGAGAGTGGACGGGATGATCTGGGACAACAGGAGACGCCTGCTGCCCAGACTACGAGTGGG
>TU2326674
CCCCCCAGGCCAGCTGGCCGTCCAGCTGACCAGCGTGGCCATAGAAGGACTGACGGACGAAGAACTGTCGGACAGCGGGGGAGAGGGCATGTACCGCGAGAGGGACGAGTTTGTGGTCAAAAACGAGGACACCGGGAGCCTgaaggtgacaTTGACAGCCGGACAGGAACCCCCAGCCATCTGGAAGGTCCAGAAAGCTCTGCTGCAGAAGTTTGTCCCTGAGCTGAGGGACAGCAAGAGAGTGTTCTCAGCCACTAACAGTTATCTGGGCTACTTTGGTGACGCTAAGACCATGTACAGGAGGGTGTACGTCAAGTTCCTGGACACGGTCAACAAGAAGGAGTACGTCCGGGTCTGTAACCGCAAACCCCGCTGCAAGCCCATGTCCTCCATGAGAGGCTGTCAGGCGAAGACACTGCTCGGTCTGAAGACTCCTCCCCGCTCAGTGAACTCTGACCCTCTCGCCACGCCCACATCACAGAAGTCCCAGTCCAAGCCTCGCACCAAGCAGCCCAAGACCAAGGCAGAGCCCCCGCCCaagaagaggaggaagtggaaggagtactctccgtctccctctgagTCCTCTCCTGAGGATGAGGCTGAAGATGATGagtTCACTCCTCCAGTGCCGTTTTCCTCTCGGTTCCTCAACACCAGGACCATGAAGGAGACG

Function

NR:

description
PREDICTED: glutamine and serine-rich protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963542.1 False 5500 mRNA 0.59 13 45810164 45825416
TU2326675 False 576 TUCP 0.57 3 45810102 45812172
TU2326672 False 778 TUCP 0.57 6 45812287 45816126
TU2326674 True 676 TUCP 0.58 5 45814866 45816185

Neighbor

gene id symbol gene type direction distance location
LOC110506930 LOC106593648 coding downstream 6617 45775803 ~ 45803547 (-)
LOC110526724 LOC106562738 coding downstream 67116 45648555 ~ 45743048 (-)
LOC110511667 kiaa1549l coding downstream 162359 45501084 ~ 45647805 (-)
LOC118944461 NA coding downstream 314472 45494333 ~ 45495692 (-)
LOC118944460 NA coding downstream 330971 45476872 ~ 45479193 (-)
LOC110506937 LOC106562570 coding upstream 210 45825620 ~ 45830907 (-)
LOC110506940 csn7 coding upstream 9281 45834697 ~ 45843007 (-)
LOC110506196 rcn1 coding upstream 83961 45909377 ~ 45922923 (-)
LOC110506941 elp4 coding upstream 153006 45978422 ~ 46083419 (-)
LOC118944491 LOC106593965 coding upstream 665299 46490715 ~ 46497792 (-)
G2033978 NA non-coding downstream 24276 45785339 ~ 45785888 (-)
G2033973 NA non-coding downstream 41458 45768498 ~ 45768706 (-)
G2033971 LOC106562763 non-coding downstream 44707 45763565 ~ 45765457 (-)
G2033942 NA non-coding downstream 188153 45621741 ~ 45622011 (-)
G2034029 NA non-coding upstream 74563 45899979 ~ 45900520 (-)
G2034030 NA non-coding upstream 75852 45901268 ~ 45901681 (-)
G2034031 NA non-coding upstream 76294 45901710 ~ 45902209 (-)
G2033970 NA other downstream 50482 45754996 ~ 45759682 (-)
LOC110506182 tecta other downstream 451472 45338567 ~ 45358724 (-)
LOC110506178 cers3 other downstream 853271 44932382 ~ 44956996 (-)
LOC110506903 LOC106562480 other downstream 887147 44705368 ~ 44923032 (-)
G2034336 NA other upstream 418636 46244052 ~ 46244592 (-)
G2034536 NA other upstream 450661 46276077 ~ 46280947 (-)
LOC118936480 NA other upstream 765279 46590380 ~ 46598515 (-)
G2034880 NA other upstream 1004918 46830334 ~ 46830621 (-)
LOC110506956 LOC106562712 other upstream 1282547 47100651 ~ 47118376 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location