LOC110506178 (cers3)


Basic Information

Item Value
gene id LOC110506178
gene name cers3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44932382 ~ 44956996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963359.1
GTGTGGAGGAGTAGCTCCTATTCTCCTGTCTGCGTTATCTGGAGAACAATGCAAACAATCCACAGATTATCACCTGAGGGCACCTTTGACTGCAGGTAGCAGGGTTagtgtgcctctctctctatctctctgtgtgtgttgcgtCGTGACACTTCTCCATTATCGTCCCTCTACGACAACGTAcctggaggggaaggaaaaaaaCTCCTGTCCAATTGTGCCTGAGCTGGGTGTGACCCTTTAAAGAATGTCAAacaaagacagggagagggagagagagcctgcCTACTGAATGGAGGGACTGTCACGCCTGTTTGTTTCCCACAGTCAACATTACATCAACAGCTCTAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGATGATTGACACCCTATATGAGTGGATCTGGTGGGACCGCTTCTGGCTGCCAGTCAACCTGACCTGGGCGGACCTAGAGGACAGAGATGGGCGTGTCTACGCCAAAGCCTCTGACCTCTATGTGACGTTGCCTTACGCCATAGGCTTCCTACTGGTCAGATACCTGTTCGAAAGGTTGATAGCCACGCCACTAGCAGCCTCAGTGGGGATCCGGGAGAAGGCCAGACTGAGAGTACCAGACAACCCCATCCTCGAACTCTACTATCTCTCTCACTCCAGAAACCCTGGCCAGgcaGTTATAGATGGTCTGTCTAAGAAGAGCGGCTGGTGCGTTAGGCAGGTGGAGCGCTGGTTCAGAAAGAGAAGAAACCAGGATCGTCCCGGAGTACTGAAGAAGTTCAGAGAGGCTAGTTGGAGGTTTGTGTTCTATCTGTTGGCGTTAATTGGAGGAGTTGTGTCCCTGTATGATaaaGAATGGTTTTATGATACGTGGGAAGTGTGGAATGGATTTCCAaaacagactaTGCTGGATTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTCTATGGTTCGCTTCTCTTCAGAGTCACTTTTGATGTCAAGAGGAAGGACTTTAAGGAACAGATCATCCACCATTTGGCCACCCTGACGCTGCTGTCCTTCTCTTGGTGTGTCAACTACATCCGTATAGGAACCCTGGTGATGCTCATCCACGATGCCTCCGACGTCCTGCTAGAGTCTGCCAAGTTGTTTAACTATGCCAAATGGGAGAGAACCTGCAACAGTCTCTTTGTGGTGTTTGCCATTGTGTTCATGGTAACCCGACTGATCATCTTCCCATTCTGGCTGATCCACTGTACGTGGGTGTACCCCACACTCCAGTACCCCCCGTTCTTTGGTTACTACTTCTTCAACGTCATGCTGGTGGTCCTCCTGTTCCTGCACATTTTCTGGGCCTACCTCATCCTGCGCATGGTCAAGAAGTTCCTCTTCGGCAAAatGACCAGAGATGAAAGAagtgatgatgaggaggatggtGACGAAAGCAGTCTGACTGAAGAGGAAAAAGAGGAGGGCAGTTATCGTTACGGCAACGGTTCTGGACTGGGCACAAAGGAGGGCAACAACGGCTGCTTCAGACACTTATCTCTCTCGGAGAACGTCTGCCCATCAAAAACCGTCTACTGACCAAGCTCGCGTCGTGATTGGCAGAGCCCTGCACCAGAGGCAGGGAGTGGTGGGATCGAGGTCATAGGAGAAGCTGG
>XM_036963360.1
GTGTGGAGGAGTAGCTCCTATTCTCCTGTCTGCGTTATCTGGAGAACAATGCAAACAATCCACAGATTATCACCTGAGGGCACCTTTGACTGCAGGTAGCAGGGTTagtgtgcctctctctctatctctctgtgtgtgttgcgtCGTGACACTTCTCCATTATCGTCCCTCTACGACAACGTAcctggaggggaaggaaaaaaaCTCCTGTCCAATTGTGCCTGAGCTGGGTGTGACCCTTTAAAGAATGTCAAacaaagacagggagagggagagagagcctgcCTACTGAATGGAGGGACTGTCACGCCTGTTTGTTTCCCACAGTCAACATTACATCAACAGCTCTAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGAGATGATTGACACCCTATATGAGTGGATCTGGTGGGACCGCTTCTGGCTGCCAGTCAACCTGACCTGGGCGGACCTAGAGGACAGAGATGGGCGTGTCTACGCCAAAGCCTCTGACCTCTATGTGACGTTGCCTTACGCCATAGGCTTCCTACTGGTCAGATACCTGTTCGAAAGGTTGATAGCCACGCCACTAGCAGCCTCAGTGGGGATCCGGGAGAAGGCCAGACTGAGAGTACCAGACAACCCCATCCTCGAACTCTACTATCTCTCTCACTCCAGAAACCCTGGCCAGgcaGTTATAGATGGTCTGTCTAAGAAGAGCGGCTGGTGCGTTAGGCAGGTGGAGCGCTGGTTCAGAAAGAGAAGAAACCAGGATCGTCCCGGAGTACTGAAGAAGTTCAGAGAGGCTAGTTGGAGGTTTGTGTTCTATCTGTTGGCGTTAATTGGAGGAGTTGTGTCCCTGTATGATaaaGAATGGTTTTATGATACGTGGGAAGTGTGGAATGGATTTCCAaaacagactaTGCTGGATTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTCTATGGTTCGCTTCTCTTCAGAGTCACTTTTGATGTCAAGAGGAAGGACTTTAAGGAACAGATCATCCACCATTTGGCCACCCTGACGCTGCTGTCCTTCTCTTGGTGTGTCAACTACATCCGTATAGGAACCCTGGTGATGCTCATCCACGATGCCTCCGACGTCCTGCTAGAGTCTGCCAAGTTGTTTAACTATGCCAAATGGGAGAGAACCTGCAACAGTCTCTTTGTGGTGTTTGCCATTGTGTTCATGGTAACCCGACTGATCATCTTCCCATTCTGGCTGATCCACTGTACGTGGGTGTACCCCACACTCCAGTACCCCCCGTTCTTTGGTTACTACTTCTTCAACGTCATGCTGGTGGTCCTCCTGTTCCTGCACATTTTCTGGGCCTACCTCATCCTGCGCATGGTCAAGAAGTTCCTCTTCGGCAAAatGACCAGAGATGAAAGAagtgatgatgaggaggatggtGACGAAAGCAGTCTGACTGAAGAGGAAAAAGAGGAGGGCAGTTATCGTTACGGCAACGGTTCTGGACTGGGCACAAAGGAGGGCAACAACGGCTGCTTCAGACACTTATCTCTCTCGGAGAACGTCTGCCCATCAAAAACCGTCTACTGACCAAGCTCGCGTCGTGATTGGCAGAGCCCTGCACCAGAGGCAGGGAGTGGTGGGATCGAGGTCATAGGAGAAGCTGG
>XM_036963358.1
TGTGTGGAGGAGTAGCTCCTATTCTCCTGTCTGCGTTATCTGGAGAACAATGCAAACAATCCACAGATTATCACCTGAGGGCACCTTTGACTGCAGGTAGCAGGGTTagtgtgcctctctctctatctctctgtgtgtgttgcgtCGTGACACTTCTCCATTATCGTCCCTCTACGACAACGTAcctggaggggaaggaaaaaaaCTCCTGTCCAATTGTGCCTGAGCTGGGTGTGACCCTTTAAAGAATGTCAAacaaagacagggagagggagagagagcctgcCTACTGAATGGAGGGACTGTCACGCCTGTTTGTTTCCCACAGTCAACATTACATCAACAGCTCTAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTGCATATTGAGGGATGATTGACACCCTATATGAGTGGATCTGGTGGGACCGCTTCTGGCTGCCAGTCAACCTGACCTGGGCGGACCTAGAGGACAGAGATGGGCGTGTCTACGCCAAAGCCTCTGACCTCTATGTGACGTTGCCTTACGCCATAGGCTTCCTACTGGTCAGATACCTGTTCGAAAGGTTGATAGCCACGCCACTAGCAGCCTCAGTGGGGATCCGGGAGAAGGCCAGACTGAGAGTACCAGACAACCCCATCCTCGAACTCTACTATCTCTCTCACTCCAGAAACCCTGGCCAGgcaGTTATAGATGGTCTGTCTAAGAAGAGCGGCTGGTGCGTTAGGCAGGTGGAGCGCTGGTTCAGAAAGAGAAGAAACCAGGATCGTCCCGGAGTACTGAAGAAGTTCAGAGAGGCTAGTTGGAGGTTTGTGTTCTATCTGTTGGCGTTAATTGGAGGAGTTGTGTCCCTGTATGATaaaGAATGGTTTTATGATACGTGGGAAGTGTGGAATGGATTTCCAaaacagactaTGCTGGATTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTCTATGGTTCGCTTCTCTTCAGAGTCACTTTTGATGTCAAGAGGAAGGACTTTAAGGAACAGATCATCCACCATTTGGCCACCCTGACGCTGCTGTCCTTCTCTTGGTGTGTCAACTACATCCGTATAGGAACCCTGGTGATGCTCATCCACGATGCCTCCGACGTCCTGCTAGAGTCTGCCAAGTTGTTTAACTATGCCAAATGGGAGAGAACCTGCAACAGTCTCTTTGTGGTGTTTGCCATTGTGTTCATGGTAACCCGACTGATCATCTTCCCATTCTGGCTGATCCACTGTACGTGGGTGTACCCCACACTCCAGTACCCCCCGTTCTTTGGTTACTACTTCTTCAACGTCATGCTGGTGGTCCTCCTGTTCCTGCACATTTTCTGGGCCTACCTCATCCTGCGCATGGTCAAGAAGTTCCTCTTCGGCAAAatGACCAGAGATGAAAGAagtgatgatgaggaggatggtGACGAAAGCAGTCTGACTGAAGAGGAAAAAGAGGAGGGCAGTTATCGTTACGGCAACGGTTCTGGACTGGGCACAAAGGAGGGCAACAACGGCTGCTTCAGACACTTATCTCTCTCGGAGAACGTCTGCCCATCAAAAACCGTCTACTGACCAAGCTCGCGTCGTGATTGGCAGAGCCCTGCACCAGAGGCAGGGAGTGGTGGGATCGAGGTCATAGGAGAAGCTGG
>XM_036963361.1
TGTGTGGAGGAGTAGCTCCTATTCTCCTGTCTGCGTTATCTGGAGAACAATGCAAACAATCCACAGATTATCACCTGAGGGCACCTTTGACTGCAGGTAGCAGGGTTagtgtgcctctctctctatctctctgtgtgtgttgcgtCGTGACACTTCTCCATTATCGTCCCTCTACGACAACGTAcctggaggggaaggaaaaaaaCTCCTGTCCAATTGTGCCTGAGCTGGGTGTGACCCTTTAAAGAATGTCAAacaaagacagggagagggagagagagcctgcCTACTGAATGGAGGGACTGTCACGCCTGTTTGTTTCCCACAGTCAACATTACATCAACAGCTCTAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGATGATTGACACCCTATATGAGTGGATCTGGTGGGACCGCTTCTGGCTGCCAGTCAACCTGACCTGGGCGGACCTAGAGGACAGAGATGGGCGTGTCTACGCCAAAGCCTCTGACCTCTATGTGACGTTGCCTTACGCCATAGGCTTCCTACTGGTCAGATACCTGTTCGAAAGGTTGATAGCCACGCCACTAGCAGCCTCAGTGGGGATCCGGGAGAAGGCCAGACTGAGAGTACCAGACAACCCCATCCTCGAACTCTACTATCTCTCTCACTCCAGAAACCCTGGCCAGgcaGTTATAGATGGTCTGTCTAAGAAGAGCGGCTGGTGCGTTAGGCAGGTGGAGCGCTGGTTCAGAAAGAGAAGAAACCAGGATCGTCCCGGAGTACTGAAGAAGTTCAGAGAGGCTAGTTGGAGGTTTGTGTTCTATCTGTTGGCGTTAATTGGAGGAGTTGTGTCCCTGTATGATaaaGAATGGTTTTATGATACGTGGGAAGTGTGGAATGGATTTCCAaaacagactaTGCTGGATTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTCTATGGTTCGCTTCTCTTCAGAGTCACTTTTGATGTCAAGAGGAAGGACTTTAAGGAACAGATCATCCACCATTTGGCCACCCTGACGCTGCTGTCCTTCTCTTGGTGTGTCAACTACATCCGTATAGGAACCCTGGTGATGCTCATCCACGATGCCTCCGACGTCCTGCTAGAGTCTGCCAAGTTGTTTAACTATGCCAAATGGGAGAGAACCTGCAACAGTCTCTTTGTGGTGTTTGCCATTGTGTTCATGGTAACCCGACTGATCATCTTCCCATTCTGGCTGATCCACTGTACGTGGGTGTACCCCACACTCCAGTACCCCCCGTTCTTTGGTTACTACTTCTTCAACGTCATGCTGGTGGTCCTCCTGTTCCTGCACATTTTCTGGGCCTACCTCATCCTGCGCATGGTCAAGAAGTTCCTCTTCGGCAAAatGACCAGAGATGAAAGAagtgatgatgaggaggatggtGACGAAAGCAGTCTGACTGAAGAGGAAAAAGAGGAGGGCAGTTATCGTTACGGCAACGGTTCTGGACTGGGCACAAAGGAGGGCAACAACGGCTGCTTCAGACACTTATCTCTCTCGGAGAACGTCTGCCCATCAAAAACCGTCTACTGACCAAGCTCGCGTCGTGATTGGCAGAGCCCTGCACCAGAGGCAGGGAGTGGTGGGATCGAGGTCATAGGAGAAGCTGG
>TU2325845
GGTTagtgtgcctctctctctatctctctgtgtgtgttgcgtCGTGACACTTCTCCATTATCGTCCCTCTACGACAACGTAcctggaggggaaggaaaaaaaCTCCTGTCCAATTGTGCCTGAGCTGGGTGTGACCCTTTAAAGAATGTCAAacaaagacagggagagggagagagagcctgcCTACTGAATGGAGGGACTGTCACGCCTGTTTGTTTCCCACAGTCAACATTACATCAACAGCTCTAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTGCATATTGAGGGATGATTGACACCCTATATGAGTGGATCTGGTGGGACCGCTTCTGGCTGCCAGTCAACCTGACCTGGGCGGACCTAGAGGACAGAGATGGGCGTGTCTACGCCAAAGCCTCTGACCTCTATGTGACGTTGCCTTACGCCATAGGCTTCCTACTGGTCAGATACCTGTTCGAAAGGTTGATAGCCACGCCACTAGCAGCCTCAGTGGGGATCCGGGAGAAGGCCAGACTGAGAGTACCAGACAACCCCATCCTCGAACTCTACTATCTCTCTCACTCCAGAAACCCTGGCCAGgcaGTTATAGATGGTCTGTCTAAGAAGAGCGGCTGGTGCGTTAGGCAGGTGGAGCGCTGGTTCAGAAAGAGAAGAAACCAGGATCGTCCCGGAGTACTGAAGAAGTTCAGAGAGGCTAGTTGGAGGTTTGTGTTCTATCTGTTGGCGTTAATTGGAGGAGTTGTGTCCCTGTATGATaaaGAATGGTTTTATGATACGTGGGAAGTGTGGAATGGATTTCCAaaacagactaTGCTGGATTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTCTATGGTTCGCTTCTCTTCAGAGTCACTTTTGATGTCAAGAGGAAGGACTTTAAGGAACAGATCATCCACCATTTGGCCACCCTGACGCTGCTGTCCTTCTCTTGGTGTGTCAACTACATCCGTATAGGAACCCTGGTGATGCTCATCCACGATGCCTCCGACGTCCTGCTAGAGTCTGCCAAGTTGTTTAACTATGCCAAATGGGAGAGAACCTGCAACAGTCTCTTTGTGGTGTTTGCCATTGTGTTCATGGTAACCCGACTGATCATCTTCCCATTCTGG

Function

symbol description
cers3 Enables sphingosine N-acyltransferase activity. Involved in ceramide biosynthetic process and keratinocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Implicated in autosomal recessive congenital ichthyosis 9.

NR:

description
PREDICTED: ceramide synthase 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963359.1 False 1779 mRNA 0.51 11 44932382 44956995
XM_036963360.1 False 1739 mRNA 0.51 11 44932382 44956995
XM_036963358.1 False 1820 mRNA 0.51 11 44932382 44956996
XM_036963361.1 False 1660 mRNA 0.51 11 44932382 44956996
TU2325845 True 1298 TUCP 0.50 9 44939238 44956893

Neighbor

gene id symbol gene type direction distance location
LOC110506903 LOC106562480 coding downstream 9350 44705368 ~ 44923032 (-)
LOC110506176 LOC106562588 coding downstream 281410 44595437 ~ 44650972 (-)
LOC110506895 LOC106562661 coding downstream 298456 44631614 ~ 44633926 (-)
LOC110506884 LOC106562652 coding downstream 411856 44499911 ~ 44520526 (-)
LOC110506880 fah coding downstream 432908 44475594 ~ 44499474 (-)
LOC110506899 LOC106587824 coding upstream 519 44957515 ~ 44962855 (-)
LOC110514694 chsy1 coding upstream 250720 45206844 ~ 45295442 (-)
LOC110519300 sels coding upstream 339013 45296009 ~ 45302288 (-)
LOC110506182 tecta coding upstream 381571 45338567 ~ 45358724 (-)
LOC118944460 NA coding upstream 519876 45476872 ~ 45479193 (-)
G2033270 NA non-coding downstream 93057 44835057 ~ 44839325 (-)
G2033271 NA non-coding downstream 93478 44836967 ~ 44838904 (-)
G2033262 NA non-coding downstream 109288 44821151 ~ 44823094 (-)
G2033256 NA non-coding downstream 116738 44811275 ~ 44815644 (-)
G2033230 NA non-coding downstream 184473 44746772 ~ 44747909 (-)
G2033313 NA non-coding upstream 7201 44964197 ~ 44964921 (-)
G2033303 NA non-coding upstream 14302 44971298 ~ 44971540 (-)
G2033305 NA non-coding upstream 15374 44972370 ~ 44973698 (-)
G2033304 NA non-coding upstream 17186 44974182 ~ 44974796 (-)
G2033317 NA non-coding upstream 18678 44975674 ~ 44976026 (-)
LOC110526988 LOC106587743 other downstream 1027142 43896015 ~ 43949012 (-)
G2032544 tmc3 other downstream 1050650 43879193 ~ 43881732 (-)
G2032150 NA other downstream 1362328 43569160 ~ 43570054 (-)
LOC110506858 LOC106562715 other downstream 1734554 43180007 ~ 43198177 (-)
LOC110511667 kiaa1549l other upstream 626762 45501084 ~ 45647805 (-)
G2033970 NA other upstream 798000 45754996 ~ 45759682 (-)
LOC110506195 LOC106562605 other upstream 853106 45810102 ~ 45825416 (-)
G2034336 NA other upstream 1287056 46244052 ~ 46244592 (-)

Expression


Co-expression Network