LOC110506858 (LOC106562715)


Basic Information

Item Value
gene id LOC110506858
gene name LOC106562715
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 43180007 ~ 43198177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963798.1
gtaacattagctaTCTCTAAAAAGTATACTTGTTTTACTTGTAATGTTTATATTTTGTCATgttttatttgtatgtttagctcacataatagtAATGTAAACGTATgcactaaggtgtatgtaatatAATGAATGTGGCAAAaacgaatgtagacattaatacatGCATGTCTATAGCTTCCTACATTTTTACAACGttgggggagtgccaagatggaggcacggcggcttcaacacagcgcccccTAAAAGTCATCTAGTTGTATACATAAATTATTGGtgcaaactcatcccaaacccagCGCATGCAGTCACATGAGAACGCGCCATGGCTTCAGTTACCTCAACCAGTCGCTCAACTCGCTCCTCCCGACGAAGCGGCGCCGGCCCGTCCAGCACCAGTCCAACCCGGCTCTCCCGAAGCCAGGAGAAAGAGGAGCTTAGCCACCTGAACGACCGCCTGGCCGCCTACATAGAGCGGGTCCGCCAGCTGGAGAATGACAAGTCCTCAATGCTGCTTCtcctggaggagaaagaggagtccACGACCCGGGAGACGGCCAACGTTCGGCGGCTGTACGAGACCGAGTTGGCCGACGCGAGGAAGAGCTTGGACGTGCTGGCTAACGACAGGGCCCGGCTGCAGATAGAGATGGGTCATCTTTCTGAAGAGCATAGCAACCTACAAGCCAGGAACCAGAAGAAGGAAGCAGAGTGTAACATGGCCATGGGTCAGTGGAGGAACTTGGAGGCGGTCCTCAACTCTAAAGACGCAGAGCTGGCCAATCAACTGGCAGATAACAGAAGACAGGCGGATGACGTCACTGACCTACAGGCCCAGGTGGCCAATTTGGAGTGTGCGCTGGCGGAGACTAAGACCCAGCTGAACTCTGAGATGTTGAGGAGGGTGGACCTGGAGAACCAGGTGCAGACGCTACGGGAACAGCTGGAGTTCCAGAGACACATTGGcgaacaggaggtcAGGGAGATCCGGAGCAGACATGAGAGTCGCCTGGTGGAGGTGGATTCTGGGAGACAGAAAGAATTTGAGAGTAAGTTGGCTGAGGCCATGCAGCAGCTACGGCAGGAGCACGACGGACAAATCCAGCAGTATAAAGAGGATCTGGAGAAGAATTTCAATGCCAAGCTGGAGAATGCCCATCAGACGGCGCTGAAGAGTAGTGACTTTGCCTCGTCCACCAGAGAGGAGCTGTCTGCCACCAAGCTCCGCATCGAGACCCTCTCCTCACAACTCAATCACTTCCAAAAACAGaatgGGGCCTTAGAGGGGCGTGTGCGGGAGCTGGAGAGGACCCTGGACCGGGAGCGCGAGGTGTGGCAGCAGCGACTGAGCCACAAGGACGAGGAGATGTCGGCCATGCGGGCCCAGATGCAGAGCCAGCTGGAGGACTACGAGCAGCTGCTGGATGTCAAGCTGGccctggacatggagatcaacgccTACCGCAAGATgctggagggagaggagcagagACTCCACCTCTCCCCGAGCCCCTCCCAGCATGGGGCCAtggcacgcacgcaggcacacgGCGCCCGCCGAGTTGTCCGCGGGAAGAAACGCAAGAATGAAGGTGGCACGGGGTCCTCGCCAGCCTACAAGGTCTCGCAGCATGCCAAGGCCCACAGTCACATGATGGTGTCGGAGATAGACCTGAAGGGGAACTACGTCACACTGAAGAACAACTCTGAGAAGGAGCAGCCACTAGGGGGCTGGGTGGTGAGGAGAAGTCACCTGGACTCTCCTGAACTGTTCTTCCAGATCCCCCCTTCCTACATACTGGCTGGGGGCAACACCCTCACTATCTGGGGTTCGGAGGCAGGCGTAGAGGCCTCTCCAGGTGACCTGGTCATGAAGAACCAGAGGAACTGGGGTCCGGTCAACAACGTGATTGTCACCCTACTGAACCCAGATGAAGAGGAGATCGCAGAGCTGCGtgtgcaggagagaggagaggaagactctGATGTGGAGGTTGATGAAGAGTTTATGGAAGGGAGTGATGTTCACTACCTCAGgagacagGCTCCGGGGAGAACAAACGAGAGTTGCTCTGTTATGTAACTCCACCTTCCTCCTTTCACAATTCTGACCTGAGAACGCTGCATCCGACCCAGGAATTCCCAGGAATACCACTGGAAAGGCTACAATGACatcctatcccctacatagtgcgtTACTTTGCCATGAACCACAGCGTGGGCACTGCACAGGGAAGTGGGTGTCATTTGACACTGGCCATGTCACCAATGGTATTATTTATGTGCCCTGTGGGAGCTTGATGGTGATTTGGGAGCACTGCTACACAAATGTGTGTGATTTCAATGCAGATTTTTTCCTAAACTAATGCAAGAGTTTGGCTGGTTGTATAGTTGCCTGTACCTGGAAAAATAGTGAGGAGCCCTTTAAAATTGcagatctgttagtgctgtctagtcaactcctatggtcatttgTCTAAACAgcacagacagatctgggaccaggcttgtaTTCTTTAAGCAGCGACATGGCGTTTGTCCTGCTACTCTGGTTCCCAACACGTCTCTCCTCCCGCTTGCTGCGAGTGACATTCATGTGCCCCTTACTGTCTTTAATGCCACATCATTCAATTGTCAAAGTTTTTAAGAAAATATGTTTCATTTGTCATACAGTATGTGTCTCCTGACTGTTTAAAATCCTGTTTGGGAAAATGACAGATTGTTCCACTCGTATGgtattacagtatgttagtacTATAACTAACTGTAAGATGAATGTTTTCTGGTGTTTTTACCCTTCAACCTGCAGCACTTTTTACCACTGAGAGAGGAGTTATACACTGAATATATCCATCATATAATGTGGACATGTTTCATGTTCATCCTGAAGTATGTGGACAGGATGCTTTTCCTGTGTTTGACAGGTACTTTGGTGGCTTTGCAATATTGTTTCTTATTTTATTTCTGAAACTTTATTTTCTTTCTATTTAGAAAAGCAACTAACTGTAACATCCTCTGAACGTTCAATTAACGTCCGAAGAAACTCCATGTTGGTTTGTCCTTATGCACCAAAATACTTATGATTTCAATAAAGATTTTTCCTTAA
>TU2324286
AGTCGCTCAACTCGCTCCTCCCGACGAAGCGGCGCCGGCCCGTCCAGCACCAGTCCAACCCGGCTCTCCCGAAGCCAGGAGAAAGAGGAGCTTAGCCACCTGAACGACCGCCTGGCCGCCTACATAGAGCGGGTCCGCCAGCTGGAGAATGACAAGTCCTCAATGCTGCTTCtcctggaggagaaagaggagtccACGACCCGGGAGACGGCCAACGTTCGGCGGCTGTACGAGACCGAGTTGGCCGACGCGAGGAAGAGCTTGGACGTGCTGGCTAACGACAGGGCCCGGCTGCAGATAGAGATGGGTCATCTTTCTGAAGAGCATAGCAACCTACAAGCCAGGAACCAGAAGAAGGAAGCAGAGTGTAACATGGCCATGGGTCAGTGGAGGAACTTGGAGGCGGTCCTCAACTCTAAAGACGCAGAGCTGGCCAATCAACTGGCAGATAACAGAAGACAGGCGGATGACGTCACTGACCTACAGGCCCAGGTGGCCAATTTGGAGTGTGCGCTGGCGGAGACTAAGACCCAGCTGAACTCTGAGATGTTGAGGAGGGTGGACCTGGAGAACCAGGTGCAGACGCTACGGGAACAGCTGGAGTTCCAGAGACACATTGGcgaacaggaggtcAGGGAGATCCGGAGCAGACATGAGAGTCGCCTGGTGGAGGTGGATTCTGGGAGACAGAAAGAATTTGAGAGTAAGTTGGCTGAGGCCATGCAGCAGCTACGGCAGGAGCACGACGGACAAATCCAGCA

Function

NR:

description
PREDICTED: lamin-L(III)-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963798.1 False 3109 mRNA 0.50 11 43180007 43198177
TU2324286 True 761 TUCP 0.58 4 43191698 43197828

Neighbor

gene id symbol gene type direction distance location
LOC118944425 LOC106562717 coding downstream 16995 43161768 ~ 43163012 (-)
LOC110526985 LOC106592271 coding downstream 192725 42964294 ~ 42987282 (-)
LOC110526700 LOC106587711 coding downstream 225303 42940157 ~ 42954704 (-)
LOC110526696 LOC106562729 coding downstream 263182 42906669 ~ 42916825 (-)
LOC110526693 LOC106587688 coding downstream 410756 42745514 ~ 42769251 (-)
LOC110506867 LOC106587795 coding upstream 230481 43428658 ~ 43439196 (-)
LOC118944426 NA coding upstream 582753 43780930 ~ 43792853 (-)
LOC110526988 LOC106587743 coding upstream 697838 43896015 ~ 43949012 (-)
LOC110526712 mesd1 coding upstream 799548 43997725 ~ 44001493 (-)
LOC110526709 cemip coding upstream 818846 44017023 ~ 44183848 (-)
G2031972 NA non-coding downstream 2941 43176713 ~ 43177066 (-)
G2031969 NA non-coding downstream 5818 43173929 ~ 43174189 (-)
G2031965 NA non-coding downstream 9102 43170672 ~ 43170905 (-)
G2031963 NA non-coding downstream 9571 43170138 ~ 43170436 (-)
G2031961 NA non-coding downstream 19110 43160474 ~ 43160897 (-)
G2031983 NA non-coding upstream 7483 43205660 ~ 43205874 (-)
G2032041 LOC106591065 non-coding upstream 194133 43392310 ~ 43392543 (-)
G2032044 NA non-coding upstream 209322 43407499 ~ 43407759 (-)
G2032045 NA non-coding upstream 211478 43409655 ~ 43410059 (-)
G2032049 NA non-coding upstream 215210 43413387 ~ 43414307 (-)
LOC110513924 rasl12 other downstream 558461 42616181 ~ 42958849 (-)
G2031343 NA other downstream 621104 42557797 ~ 42558903 (-)
G2031286 LOC106562727 other downstream 718692 42459257 ~ 42461315 (-)
G2031259 NA other downstream 810098 42368254 ~ 42369909 (-)
G2031225 NA other downstream 833282 42343282 ~ 42346725 (-)
G2032150 NA other upstream 370983 43569160 ~ 43570054 (-)
G2032544 tmc3 other upstream 681016 43879193 ~ 43881732 (-)
LOC110506903 LOC106562480 other upstream 1655676 44705368 ~ 44923032 (-)
LOC110506178 cers3 other upstream 1741061 44932382 ~ 44956996 (-)
G2031974 NA other downstream 5974 43184636 ~ 43185724 (-)

Expression


Co-expression Network