LOC110513924 (rasl12)


Basic Information

Item Value
gene id LOC110513924
gene name rasl12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42616181 ~ 42958849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593566.2
GTAAGCAGCAACATTCTTCAGCAAATGTTAACCGATTCGTCTACTTGACGCAAGGTCCTACCAGCTGTGCACGCACGGAGCAGCTCGAGCTTCTTTCACCATCGAGTATGAGCATCCTCATCATCGGACAGGATTTAAGAGCGCGTTCTAAAACTCGTTGGGATGTTTTTATCGCATTTGGATTCATATGATTTTAAATgtaatacagatttttttttaaaccacatCAAACCAACTAGCCGATTCACTTCAACTCCAGTCTTTAACTCTGAGAAAAGCTTTTAAGTCTAAAGATGTCACAGATGTTTGGGAAAGCAAGGAGTTGTAACTTCTCTGCTATCCCTGAGGGGGGACAACCTGAGGTCAATGTGGTCATCCTTGGAGTGAAGGGCTCAGGAAAATCAGCGTTGACTGTCAAATTTCTCACCAAGCGCTTCATTAGTGAATATGACCCCAATCTAGAGGATACTTACTCTTCTGAGGACATGGTGGACCAACAGCCTGTCGTTGTGAAAGTTATGGACACAGCTGACCAGGACGGCCCAGTGAACTGTGAGCGCTACCTCTCGTGGGCCAGTGCCTTCCTTGTGGTCTACAGCATAGACAATAGACGGAGCTTTGAGGGCTGCCAACAGTACCTGGAGGCCGTCACCGTCCACACCAAGGCCCTGCAGCCCAAGACCCCCATTATACTGCTGGGCAACAAGCTGGACATGGAGAGATACAGGCAGGTGAGTAAGTCGGACGGCTCGGCCCTCGCCACCCGTTTCGGCTGCCTGTTCTTCGAGGTGTCTGCTTGCCTGGACTTCCTGTCTGTCCAGCGGGTCTTCCATGAAGCCGTTAGGGAGGCCAGGCAGCTGGGCGGCAAAAGGAGCCCCCCGTTACGTCCCCTTTACATCAGTGAGGACAACAAGCCATTGTTCAGCCTCGCCACCGTGCCCCCGTTCACCACCCCCTGCTACAAGGAGCTCCCAGTGCCCGCCACCGCCAAGCTGGTGACGGTCAAGTCGTCACGGGCACAGAGCAAACGGCGGGCACCCACGCTGACGCTGCTCAAGGGCTTCAAGATCTTCTGATGAGTCGATGGAGAATGAGACCAGACTTAAAGAATGGAAATTTGAGACTTGTCTCAAACTTGTGCTCAAAGACTTGAAACTTATGCTCAAACCTTGAGACTTAACTTGGACTTGTGCCAGAGACTTGAGACTTGACTGAGTGTCTCAGGCTCGAAGACTTGACTCAACCTGGACTTTCCTAAAGTGACTTATTGACAAGTCTGCCATAGTGGCTTACAATATGGACAAGTGAGAGAACTGTGAAATAGGTTATGAGAGACAATGGACTGTGTCAAATGTGAAAAACGGAAGAAAATGGAGCCAGAATAACATACAACCAAGCCATCAACATACTGTATGCAGCAGAAGCTGTCATGGTGATATCACCTTCGTTGGAGCGTGTACCAAAACATCATGATGACTTACTGCACCTTCAAGTGAGGAGAAGGAACAGTAATTATCAGAGCTCCTTGAGAGATGGACAGTAATGGACTGGTGTTTAAACTGTCATTGTGAATGTTGAATTTATATTGCCAAAGTTTTCAAAGTTTGTCTTGAAGTCAGTTACTGGGACAAAGTTATGTTAGTTGCCAAATGTATTGTGGTGATTGGAGTGCATATGACGGTGATGGTGTGTTCACTGTAGTATAGATTGCTGACACTATGCACATgtatttttatatacattttaatAAGCTTTAAAGGAAAACTAATTTTATCGGTTGAAGACATATGTTGTTCATGTAGATACATGTTTTAAGTTATTTGATGTTATAACACAAAGTAGCAAGTCAATCTGAgtaaaaggcccagtgcagtcaaaattcagtttttctgtgttttatattgTACAACAgttgatgaaactaacactgtaaaagtgtgaaaaaTGGGATCAGTGTAATTTCCTGATAGGTGCTGgtttctaatcagcaggtttgcatggccgggagttttggctttccatggGGACATCACCATGCTATAAATTGGTTCATAGACAAATAACAAAGACAGTTCCAaacatctctgccaataacagctagttttcagttttcccctcccatctcagaccactcccagacagtctgagcgaaattcttgcttgagaaatatgTTTTTGCTAAAAAAGCATTTTTTGCCAATTtgaatggaaatctattacagtaaggtacttaattgctaCCCAgtaatgatttgatattgatatcaAAACAACTGCATTGGGGCTTTAACTTCATATATACATCGTTTTCACGAGTTGTGGGCGCCCTCCTCAGGCTCATCAGTGTAACAACGGTTGCATTTTTTATAACTTAAAACACAGTTTTATACTATTGTATGCTAATGCCATCCCAACCAAAATTACAAAACAGAACTATTTTGATATGAACAGTTTTATTTCCTTATTGTAAATACTGCAATTGTTGGAATGCTTTTATAACACAATGAAAATCTATCTTACATATGGAGAGGTGGTGTGATGACAAAAGTTAACCCACTGAAttctgttttctatccaaaacaTCTATATGTGAATACTCTCTCACAAGAGCGTTCCACTATACTCACAGCAAGATCATTCCAGTTTGTATTAtattaggatccccgttagctgATGCCATGACGTCGGCTAATCTTCCTGGTGGCCAGCATTATAACTAAAAATACTGTACAAATACAATTACAAACGAGATGTATAAAGATAAGTTTGATCTTCCAATCTTAATGTTATCTCAGACCATGTTTAGTTGCCTTTTAGTGTTTCCCAAGTAGACTACACTTGAATAGCTTATGACACATGGTTTATAAGTGTTCCTACATACTGTCAAGAGACATAGGAAAACTTTTCACTGCACTATAAACAACACGTTGCACTTCTTCATGaccaaaaaacaacatttacTAACTATTTGGTATCCCAAATAGTTGGTTGCGATGTTTCGACGGCCAGCAATGTTTACAGTAGATGTATATTCCATTGCTGAAACTGCAAACAACAAAGTACTTGTGAATGATGACTGTGATACTGCACGTCTTGTACACAGCATTATttgtagtagttgtatacccttttcacactactgagccaagTCAAGCTGTACTGCGCTGGCATGGTTACGCATCCACCAATAAAATATCTGGCTCAGCACAGTACGGTCTGGCTCAGCACAGTAGTGTAAAATGGGCATTACAGTAATTA
>TU2323770
ttccaaacatctctgccaataacagctcgttttcagttttcccctcccatctcagaccactcccagacagtctgagcgaaattcttgcttgagaaatatgTTTTTGCTAAAAAAGCATTTTTTGCCAATTtgaatggaaatctattacagtaaggtacttaattgctaCCCAgtaatgatttgatattgatatcaAAACAACTGCATTGGGGCTTTAACTTCATATATACATCGTTTTCACGAGTTGTGGGCGCCCTCCTCAGGCTCATCAGTGTAACAACGGTTGCATTTTTTATAACTTAAAACACAGTTTTATACTATTGTATGCTAATGCCATCCCAACCAAAATTACAAAACAGAACTATTTTGATATGAACAGTTTTATTTCCTTATTGTAAATACTGCAATTGTTGGAATGCTTTTATAACACAATGAAAATCTATCTTACATATGGAGAGGTGGTGTGATGACAAAAGTTAACCCACTGAAttctgttttctatccaaaacaTCTATATGTGAATACTCTCTCACAAGAGCGTTCCACTATACTCACAGCAAGATCATTCCAGTTTGTATTAtattaggatccccgttagctgATGCCATGACGTCGGCTAATCTTCCTGGTGGCCAGCATTATAACTAAAAATACTGTACAAATACAATTACAAACGAGATGTATAAAGATAAGTTTGATCTTCCAATCTTAATGTTATCTCAGACCATGTTTAGTTGCCTTTTAGTGTTTCCCAAGTAGACTACACTTGAATAGCTTATGACACATGGTTTATAAGTGTTCCTACATACTGTCAAGAGACATAGGAAAACTTTTCACTGCACTATAAACAACACGTTGCACTTCTTCATGaccaaaaaacaacatttacTAACTATTTGGTATCCCAAATAGTTGGTTGCGATGTTTCGACGGCCAGCAATGTTTACAGTAGATGTATATTCCATTGCTGAAACTGCAAACAACAAAGTACTTGTGAATGATGACTGTGATACTGCACGTCTTGTACACAGCATTATttgtagtagttgtatacccttttcacactactgagccaagTCAAGCTGTACTGCGCTGGCATGGTTACGCATCCACCAATAAAATATCTGGCTCAGCACAGTACGGTCTGGCTCAGCACAGTAGTGTAAAATGGGCATTACAGTAATTACAGTGGTTGTTTAAGTTACAGGTCAAAATAAAACAACTTAAAAGGACAGTTATTCCTAAGTAAATAGGAGTTTATGTTCTGCCTCTGCAGAGGAGCAGTAATGAGGAACGTGGCTGTtatatctctctccttcatccctcTACCACCACTCCCTCTTCTGcctcctctttctctacctcaaccacctcctctttcttcaacacctcctctttctctacctccgcCAACACCTCCACTTCCCCCTCAGGCTCGGGGTACAGGCTGGACACGTTCCCGTCATTCCAGGTCACCACAATGTCCCCCGGTTTGAGCCCCTCTACCTCCCCGTTGTCCTGGAGGGGCTTGGCCTGGCTCACTGGGATCTCAGATGGGCTCATACTGACCTGGACATAGGCACTATTGACGGAGTTAGTTCTTTGACCTCCAACTTCCGTGACGATGACCTGTAGTTCTTCCGCCTCCGGCTTCATGGCCAGAGCCGCCGCCTTGTACTTGGCTATCTTATTCCGGTTTCTGTGTGGAGGATGATGGGAAATGTAGTCACTGTGATGTAAATAAAGATGGCCAGA
>TU2323768
ttccaaacatctctgccaataacagctcgttttcagttttcccctcccatctcagaccactcccagacagtctgagcgaaattcttgcttgagaaatatgTTTTTGCTAAAAAAGCATTTTTTGCCAATTtgaatggaaatctattacagtaaggtacttaattgctaCCCAgtaatgatttgatattgatatcaAAACAACTGCATTGGGGCTTTAACTTCATATATACATCGTTTTCACGAGTTGTGGGCGCCCTCCTCAGGCTCATCAGTGTAACAACGGTTGCATTTTTTATAACTTAAAACACAGTTTTATACTATTGTATGCTAATGCCATCCCAACCAAAATTACAAAACAGAACTATTTTGATATGAACAGTTTTATTTCCTTATTGTAAATACTGCAATTGTTGGAATGCTTTTATAACACAATGAAAATCTATCTTACATATGGAGAGGTGGTGTGATGACAAAAGTTAACCCACTGAAttctgttttctatccaaaacaTCTATATGTGAATACTCTCTCACAAGAGCGTTCCACTATACTCACAGCAAGATCATTCCAGTTTGTATTAtattaggatccccgttagctgATGCCATGACGTCGGCTAATCTTCCTGGTGGCCAGCATTATAACTAAAAATACTGTACAAATACAATTACAAACGAGATGTATAAAGATAAGTTTGATCTTCCAATCTTAATGTTATCTCAGACCATGTTTAGTTGCCTTTTAGTGTTTCCCAAGTAGACTACACTTGAATAGCTTATGACACATGGTTTATAAGTGTTCCTACATACTGTCAAGAGACATAGGAAAACTTTTCACTGCACTATAAACAACACGTTGCACTTCTTCATGaccaaaaaacaacatttacTAACTATTTGGTATCCCAAATAGTTGGTTGCGATGTTTCGACGGCCAGCAATGTTTACAGTAGATGTATATTCCATTGCTGAAACTGCAAACAACAAAGTACTTGTGAATGATGACTGTGATACTGCACGTCTTGTACACAGCATTATttgtagtagttgtatacccttttcacactactgagccaagTCAAGCTGTACTGCGCTGGCATGGTTACGCATCCACCAATAAAATATCTGGCTCAGCACAGTACGGTCTGGCTCAGCACAGTAGTGTAAAATGGGCATTACAGTAATTACAGTGGTTGTTTAAGTTACAGGTCAAAATAAAACAACTTAAAAGGACAGTTATTCCTAAGTAAATAGGAGTTTATGTTCTGCCTCTGCAGAGGAGCAGTAATGAGGAACGTGGCTGTtatatctctctccttcatccctcTACCACCACTCCCTCTTCTGcctcctctttctctacctcaaccacctcctctttcttcaacacctcctctttctctacctccgcCAACACCTCCACTTCCCCCTCAGGCTCGGGGTACAGGCTGGACACGTTCCCGTCATTCCAGGTCACCACAATGTCCCCCGGTTTGAGCCCCTCTACCTCCCCGTTGTCCTGGAGGGGCTTGGCCTGGCTCACTGGGATCTCAGATGGGCTCATACTGACCTGGACATAGGCACTATTGACGGAGTTAGTTCTTTGACCTCCAACTTCCGTGACGATGACCTGTAGTTCTTCCGCCTCCGGCTTCATGGCCAGAGCCGCCGCCTTGTACTTGGCTATCTTATT
>TU2323769
ATTACAAGAGCCGGGACACAATGACACATTTTCTGTGCAAATGGAAACCATTTGAAGATCTATTCTAAATCAATTGATACGTCTTCTAAAGCCTTTGCCACTAATTGTTTTGAAGTGATGACCTTTTCCCCTTGTCTGTCTCTACCGCCAGGACGGCCCAGTGAACTGTGAGCGCTACCTCTCGTGGGCCAGTGCCTTCCTTGTGGTCTACAGCATAGACAATAGACGGAGCTTTGAGGGCTGCCAACAGTACCTGGAGGCCGTCACCGTCCACACCAAGGCCCTGCAGCCCAAGACCCCCATTATACTGCTGGGCAACAAGCTGGACATGGAGAGATACAGGCAGGTGAGTAAGTCGGACGGCTCGGCCCTCGCCACCCGTTTCGGCTGCCTGTTCTTCGAGGTGTCTGCTTGCCTGGACTTCCTGTCTGTCCAGCGGGTCTTCCATGAAGCCGTTAGGGAGGCCAGGCAGCTGGGCGGCAAAAGGAGCCCCCCGTTACGTCCCCTTTACATCAGTGAGGACAACAAGCCATTGTTCAGCCTCGCCACCGTGCCCCCGTTCACCACCCCCTGCTACAAGGAGCTCCCAGTGCCCGCCACCGCCAAGCTGGTGACGGTCAAGTCGTCACGGGCACAGAGCAAACGGCGGGCACCCACGCTGACGCTGCTCAAGGGCTTCAAGATCTTCTGATGAGTCGATGGAGAATGAGACCAGACTTAAAGAATGGAAATTTGAGACTTGTCTCAAACTTGTGCTCAAAGACTTGAAACTTATGCTCAAACCTTGAGACTTAACTTGGACTTGTGCCAGAGACTTGAGACTTGACTGAGTGTCTCAGGCTCGAAGACTTGACTCAACCTGGACTTTCCTAAAGTGACTTATTGACAAGTCTGCCATAGTGGCTTACAATATGGACAAGTGAGAGAACTGTGAAATAGGTTATGAGAGACAATGGACTGTGTCAAATGTGAAAAACGGAAGAAAATGGAGCCAGAATAACATACAACCAAGCCATCAACATACTGTATGCAGCAGAAGCTGTCATGGTGATATCACCTTCGTTGGAGCGTGTACCAAAACATCATGATGACTTACTGCACCTTCAAGTGAGGAGAAGGAACAGTAATTATCAGAGCTCCTTGAGAGATGGACAGTAATGGACTGGTGTTTAAACTGTCATTGTGAATGTTGAATTTATATTGCCAAAGTTTTCAAAGTTTGTCTTGAAGTCAGTTACTGGGACAAAGTTATGTTAGTTGCCAAATGTATTGTGGTGATTGGAGTGCATATGACGGTGATGGTGTGTTCACTGTAGTATAGATTGCTGACACTATGCACATgtatttttatatacattttaatAAGCTTTAAAGGAAAACTAATTTTATCGGTTGAAGACATATGTTGTTCATGTAGATACATGTTTTAAGTTATTTGATGTTATAACACAAAGTAGCAAGTCAATCTGAgtaaaaggcccagtgcagtcaaaattcagtttttctgtgttttatattgTACAACAgttgatgaaactaacactgtaaaagtgtgaaaaaTGGGATCAGTGTAATTTCCTGATAGGTGCTGgtttctaatcagcaggtttgcatggccgggagttttggctttccatggGGACATCACCATGCTATAAATTGGTTCATAGACAAATAACAAAGACAGTTCCAaacatctctgccaataacagctagttttcagttttcccctcccatctcagaccactcccagacagtctgagcgaaattcttgcttgagaaatatgTTTTTGCTAAAAAAGCATTTTTTGCCAATTtgaatggaaatctattacagtaaggtacttaattgctaCCCAgtaatgatttgatattgatatcaAAACAACTGCATTGGGGCTTTAACTTCATATATACATCGTTTTCACGAGTTGTGGGCGCCCTCCTCAGGCTCATCAGTGTAACAACGGTTGCATTTTTTATAACTTAAAACACAGTTTTATACTATTGTATGCTAATGCCATCCCAACCAAAATTACAAAACAGAACTATTTTGATATGAACAGTTTTATTTCCTTATTGTAAATACTGCAATTGTTGGAATGCTTTTATAACACAATGAAAATCTATCTTACATATGGAGAGGTGGTGTGATGACAAAAGTTAACCCACTGAAttctgttttctatccaaaacaTCTATATGTGAATACTCTCTCACAAGAGCGTTCCACTATACTCACAGCAAGATCATTCCAGTTTGTATTAtattaggatccccgttagctgATGCCATGACGTCGGCTAATCTTCCTGGTGGCCAGCATTATAACTAAAAATACTGTACAAATACAATTACAAACGAGATGTATAAAGATAAGTTTGATCTTCCAATCTTAATGTTATCTCAGACCATGTTTAGTTGCCTTTTAGTGTTTCCCAAGTAGACTACACTTGAATAGCTTATGACACATGGTTTATAAGTGTTCCTACATACTGTCAAGAGACATAGGAAAACTTTTCACTGCACTATAAACAACACGTTGCACTTCTTCATGaccaaaaaacaacatttacTAACTATTTGGTATCCCAAATAGTTGGTTGCGATGTTTCGACGGCCAGCAATGTTTACAGTAGATGTATATTCCATTGCTGAAACTGCAAACAACAAAGTACTTGTGAATGATGACTGTGATACTGCACGTCTTGTACACAGCATTATttgtagtagttgtatacccttttcacactactgagccaagTCAAGCTGTACTGCGCTGGCATGGTTACGCATCCACCAATAAAATATCTGGCTCAGCACAGTACGGTCTGGCTCAGCACAGTAGTGTAAAATGGGCATTACAGTAATTACAGTGGTTGTTTAAGTTACAGGTCAAAATAAAACAACTTAAAAGGACAGTTATTCCTAAGTAAATAGGAGTTTATGTTCTGCCTCTGCAGAGGAGCAGTAATGAGGAACGTGGCTGTtatatctctctccttcatccctcTACCACCACTCCCTCTTCTGcctcctctttctctacctcaaccacctcctctttcttcaacacctcctctttctctacctccgcCAACACCTCCACTTCCCCCTCAGGCTCGGGGTACAGGCTGGACACGTTCCCGTCATTCCAGGTCACCACAATGTCCCCCGGTTTGAGCCCCTCTACCTCCCCGTTGTCCTGGAGGGGCTTGGCCTGGCTCACTGGGATCTCAGATGGGCTCATACTGACCTGGACATAGGCACTATTGACGGAGTTAGTTCTTTGACCTCCAACTTCCGTGACGATGACCTGTAGTTCTTCCGCCTCCGGCTTCATGGCCAGAGCCGCCGCCTTGTACTTGGCTATCTTATT

Function

symbol description
rasl12 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adaxial cell and blood vasculature. Orthologous to human RASL12 (RAS like family 12).

NR:

description
ras-like protein family member 12

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593566.2 False 3258 mRNA 0.42 6 42616750 42623307
TU2323770 False 1755 lncRNA 0.41 2 42616181 42958849
TU2323768 False 1692 lncRNA 0.41 2 42616244 42958849
TU2323769 True 3379 TUCP 0.43 2 42616244 42621546

Neighbor

gene id symbol gene type direction distance location
LOC118944394 LOC106587699 coding downstream 7884 42603751 ~ 42608866 (-)
LOC118944434 NA coding downstream 51060 42564249 ~ 42565690 (-)
LOC110526673 LOC106562627 coding downstream 62241 42551212 ~ 42554509 (-)
LOC110518657 LOC106587629 coding downstream 65670 42548349 ~ 42551080 (-)
LOC110526670 NA coding downstream 90285 42524581 ~ 42526465 (-)
ubap1lb LOC106562636 coding upstream 5371 42627022 ~ 42642253 (-)
LOC110526685 LOC106562637 coding upstream 19597 42642904 ~ 42646490 (-)
LOC118936599 LOC106562638 coding upstream 24458 42647765 ~ 42668743 (-)
LOC110526688 ankdd1a coding upstream 63573 42686880 ~ 42708753 (-)
LOC118944567 NA coding upstream 107939 42731246 ~ 42733570 (-)
G2031519 NA non-coding downstream 24885 42591575 ~ 42591865 (-)
G2031518 NA non-coding downstream 25249 42591273 ~ 42591501 (-)
G2031332 NA non-coding downstream 28103 42588338 ~ 42588647 (-)
G2031357 NA non-coding downstream 28896 42587601 ~ 42587854 (-)
G2031342 NA non-coding downstream 59169 42557352 ~ 42557581 (-)
G2031538 NA non-coding upstream 119326 42742633 ~ 42743952 (-)
G2031638 NA non-coding upstream 246790 42870097 ~ 42870520 (-)
G2031647 NA non-coding upstream 287810 42911117 ~ 42911423 (-)
G2031343 NA other downstream 57847 42557797 ~ 42558903 (-)
G2031286 LOC106562727 other downstream 155435 42459257 ~ 42461315 (-)
G2031259 NA other downstream 246841 42368254 ~ 42369909 (-)
G2031225 NA other downstream 270025 42343282 ~ 42346725 (-)
LOC118944568 LOC106562433 other downstream 399285 42214901 ~ 42217502 (-)
G2031974 NA other upstream 561329 43184636 ~ 43185724 (-)
LOC110506858 LOC106562715 other upstream 568391 43180007 ~ 43198177 (-)
G2032150 NA other upstream 945853 43569160 ~ 43570054 (-)
G2032544 tmc3 other upstream 1255886 43879193 ~ 43881732 (-)
LOC110526988 LOC106587743 other upstream 1276193 43896015 ~ 43949012 (-)
LOC110526985 LOC106592271 coding upstream 5445 42964294 ~ 42987282 (-)
LOC118944425 LOC106562717 coding upstream 202919 43161768 ~ 43163012 (-)
LOC110506867 LOC106587795 coding upstream 469809 43428658 ~ 43439196 (-)
LOC118944426 NA coding upstream 822081 43780930 ~ 43792853 (-)
G2031633 NA non-coding upstream 3347 42962196 ~ 42963888 (-)
G2031663 NA non-coding upstream 15260 42974109 ~ 42974393 (-)
G2031671 NA non-coding upstream 23932 42982781 ~ 42982999 (-)
G2031673 NA non-coding upstream 25267 42984116 ~ 42984383 (-)
G2031677 NA non-coding upstream 28620 42987469 ~ 42987814 (-)

Expression


Co-expression Network