LOC118944394 (LOC106587699)


Basic Information

Item Value
gene id LOC118944394
gene name LOC106587699
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42603751 ~ 42608866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963166.1
cttaaattgatttttatttctTTATGGCAAGTATGTTTTACAGTTAAAGGTAAATGACCTCCAGGTCATCTACTATACCTTAGCAGAGGAGAAAGAAGTAGGCTGGCCTTTTAAGTGAGTGAGTTAAACTGTTTTGTGAACACAAAGACATTATTTGCCAACACTTTAAAAATCGAATGGGATGAGGATACTCAAATAACAAATAATTTTGTTGGTTGGTTGTGAAGATACCCTAAAAACACACTACTTCGATACAGCTACGACCAGAAGTTACTTTTTTTGTAGCGGGTTAGGAGATTTTACGCAGCAGGTAAGGAGAatcaacatagcaggttaggattttttttttaaattttttttacctttatttaaccaggaagggctcattgagattaaaatatatttttcaagagcgccctggccaaaATAGGCAGCACCAATTCATTACAAAAGAATTACAGACAgaaaacatgaaaaactacaagtaatctagtaaaaaggATACTTagattaaggttaggaaaagggttagggtttgggttagcgAAAATGCTCTCAGATCATAACCTGCAATGAAAAGTAATTTCTGGTCATAGTTGTTTCAAAGTGGTGTGTTTTAAGGGAGTCCCATTGGTTGTGGTTGGAATAAAGTCAATTATTTACACATATAATATCCCTTCTCTGTGAGGAAAAAAATAAACAGTTCAGTTTCATGGGAGAGAACTTGATTCTCTCTGAAGGTTTGGACCACATAATATACCTCTCTGCACAGGGACTCACGCCTCGATCACACGGACCGTGCTCTTCATTCCGGGActccagaagtacattcattccaatggaacgctgctttgcagaggcagttgcaatGCGTTCTATGTGGTGCTAAACAtaggatttaaaaaatgtatgcgtCAAACTGTATTCGTAGACGaattgacagaaatggtagcagtaggtgaatgttgaacttttgttgcacccatatccagatgatgctgcgttcTATTGTGCGCAGAGCACTATCGGTCTGATCAAGGCGTCACTGTCTAGTCGGAACTAAAAGTGTCTGATCAAACGAAGGGAGAACTATTTTCGATAGAACCGGAAACATGGTGTATGTCAAGAAAAAATATGGCGGCGCCCGTATGTAGAAATACCTTAACGTTATAGCTGACATTAATCAAGCTACATGTTGGACAATATTAATTAACGCTAAAGGTAACAGTGTCACACGAATAAATCTTAATTCTAGAGGGGCCCTCGTGTAATTTGTTGAGCTTGTCTTGACGAATAAACTAGCCATACTGGAGTCGAGCATTGCTAGCTAATTTTGACACACTGGTGGCATTAGTAGATGCCCGCCCGACCAATGACAGAAGATGTGGAACAATGTCAAGGCAAAAGTAATGGGTCTGAAAATACTCCATGGCTTTTGCAATTATTACACCCAGAGGCATGCATCTGTTGGCGTGTGGGTCAAAAGAACGCCGGAGAAACATAGGCGTTGTGGACAAGTCCCTGGCAAGACTCGCCTATTTGCCACTAGGAACTACTTATCAACAGAACCACCTTGGAGGGTCCTTTTCTTTGGGACAGATGATTTTGCTGTAGAATCCCTCAAGCTGCTCTCTGCGTCAAGGGACTCCAATGACCGAATTGTGGAATCACTTGAGGTTGTCACACTATCCAATGACGTCCCTGTGAAGAAGTTTGCTGATCAAAACAAACTACCCGTTCATGTCTGGCCTCTCGGGGATCTTCAAGGGCGGTTCGATGTCGGGGTGGTGGTGTCGTTTGGCTGCTTGCTTCGGGAAGGACTTATCAACCAGTTTCCATGTGGGATCCTGAATGTCCACCCCAGCCTTCTCCCCAGATGGCGCGGCCCCGCCCCAGTGTTCCACACCATCCTACACGGAGACACTATCACCGGGGTCAGCGTCATGCAGATACGACCAAAGAGGTTTGATGTGGGTCCCATTCTTCATCAGGAGATCTACCAGGTCCCAGACAACTTCACAGCTGACCAGCTAGGAGCTACTCTGGCCACCAAGGGAGCCCAGCTGTTGATTGACACATTAAGGACCCTTCCAGAGAGAATCACAAACCGAAGGGAGCAAGCTCAAGACGGTGCCACTTTAGCCCCTAAAATCAGCACATCGATGAGCTGGATCGTATGGGAGGAGCAGACCTGTGTCCAGATCGACTGCCTGTTTCGTGCCATCGCATCCCGGATCCCATTGAGAACAATTTGGATGGGCAAGACCATAAAGCTGCTGGACTTTGCTGGCAAGTGCAACATTTCACTATCAGGTCGAGGGAGGATACCTGTGCCAGGATCTATGAGTTATCAGAAAGAATCCAACACCTTGGCTGTCTGTTGTAAGGATGGCTGGGTGGGATTCAAGGCGGTGATGCTGAAGAAGAGACTGTCGGCAGCGGACTTCTACAACGGATATCTCCATCAGAGCTTCCAGAACAGATCTGGCCCTCCCAAGCAGGAGTGCCTGTTCCACAGTAACAGAACTAAATTACATTCAGCTGGAGAGGAGAACTCATTGACACAGCTACACGCTGTGCattaaaacacaaaacaacaacctACTTTAATGTTATTTGATTAGATACATTTCCTGTAAAAAATAAAGGATCTATACTATGTCTGTTTTAAGACAACATATTTAAGAGTACACACAAGAGTAGTGTTCAGCAGGGAACACCGTGGCAAAACGTTTTGAAACTAAAAATGAGCATTTCTTATTGTTCAAGTCCAGGTAGTAACGACCCTCTGTTTCAAAAACGTTTTCTCTTATTTTACACCTACTGGAAACTATTTCCTGATAGCCTATGGAACACATGAATGTAATAATAGTGATATCATGGAGAGACTGTTGTGTGTGAGTAGTTTGTTGTCGAATGCAAAACCCTCAAACCCGTTAGACTACCAAAATAACAGTTGTATTTGCATAAATAAACATTTACAATGTT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA biological_process
GO:0004479 methionyl-tRNA formyltransferase activity molecular_function

KEGG:

id description
K00604 MTFMT, fmt; methionyl-tRNA formyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963166.1 True 2988 mRNA 0.43 9 42603751 42608866

Neighbor

gene id symbol gene type direction distance location
LOC118944434 NA coding downstream 38061 42564249 ~ 42565690 (-)
LOC110526673 LOC106562627 coding downstream 49242 42551212 ~ 42554509 (-)
LOC110518657 LOC106587629 coding downstream 52671 42548349 ~ 42551080 (-)
LOC110526670 NA coding downstream 77286 42524581 ~ 42526465 (-)
LOC110506854 mfap1 coding downstream 87378 42512280 ~ 42516373 (-)
LOC110513924 rasl12 coding upstream 7884 42616181 ~ 42958849 (-)
ubap1lb LOC106562636 coding upstream 19812 42627022 ~ 42642253 (-)
LOC110526685 LOC106562637 coding upstream 34038 42642904 ~ 42646490 (-)
LOC118936599 LOC106562638 coding upstream 38899 42647765 ~ 42668743 (-)
LOC110526688 ankdd1a coding upstream 78014 42686880 ~ 42708753 (-)
G2031519 NA non-coding downstream 11886 42591575 ~ 42591865 (-)
G2031518 NA non-coding downstream 12250 42591273 ~ 42591501 (-)
G2031332 NA non-coding downstream 15104 42588338 ~ 42588647 (-)
G2031357 NA non-coding downstream 15897 42587601 ~ 42587854 (-)
G2031342 NA non-coding downstream 46170 42557352 ~ 42557581 (-)
G2031538 NA non-coding upstream 133767 42742633 ~ 42743952 (-)
G2031638 NA non-coding upstream 261231 42870097 ~ 42870520 (-)
G2031343 NA other downstream 44848 42557797 ~ 42558903 (-)
G2031286 LOC106562727 other downstream 142436 42459257 ~ 42461315 (-)
G2031259 NA other downstream 233842 42368254 ~ 42369909 (-)
G2031225 NA other downstream 257026 42343282 ~ 42346725 (-)
LOC118944568 LOC106562433 other downstream 386286 42214901 ~ 42217502 (-)
G2031974 NA other upstream 575770 43184636 ~ 43185724 (-)
LOC110506858 LOC106562715 other upstream 582832 43180007 ~ 43198177 (-)
G2032150 NA other upstream 960294 43569160 ~ 43570054 (-)
G2032544 tmc3 other upstream 1270327 43879193 ~ 43881732 (-)

Expression


Co-expression Network