LOC110526700 (LOC106587711)


Basic Information

Item Value
gene id LOC110526700
gene name LOC106587711
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42940157 ~ 42954704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964082.1
TATTGCTGCATATACTTTGGCAGTACTAGGGTTAGTTTGACAACTATGGCACTGGCAGACCTATTTTCTGCCATAATTTATTTAGCATATTTAAGTAGCCTGCAGGCTACTCAAAATGTAGGCTGTAATTGAAAACAATACTGCATTTTAAATTGTGCCTCTGCAAGGACAGGCAAGAAATTGGTTATGTAGTCTAGGAATTACCCATATTTTCTGTCTCTATTTGAGGAGTAGCCTAATTTTGGTGAGAGTCCATGTTTTCCATGCCGCTGTCCTTTTTAAATTAATACATCCACTATTGAGGacgttttttttaattattattattattaacactcTCTAAGGACTACAGTGACAGCTTCTCGACGTTGGGATTTAGGTTTTGTACCTGTATTCTTGCGCTGATCTACACATTTTCGTGCATGAGGCACCGTTTCCAGGCCTTATCCTTtgctttaattatttatttacgtGTAAACTGCGGTCTTGCTATCAAAACATTGATGGTCGATAATCCCCATCTCTGTTGAGGGCCGAACTAAAACACCTTCATTTATTTTCATCTCAAATTGGAGTAGGCTGGCACACAGTCATTATGGCTCGTCCACGGCCGCGGGAGTACAAGGCAGGAGATTTGGTTTTTGCGAAGATGAAGGGATACCCACACTGGCCAGCGAGGATTGATGAGCTTCCAGAGGGAGCTGTCAAGCCACCTGCTAATAAATATCCCATATTTTTCTTCGGCACACATGAAACTGCCTTCCTGGGCCCCAGGGATCTCCTACCATACAAGGAGTACAAGGACAAGTTTGGCAAGTCCAACAAGAGGAAAGGTTTCAACGAGGGTCTGTGGGAGATCGAGAACAACGCAGGGGTCAAATTCACCGGCTATCAGGCCATCCAGCAGCAGAGCTTTTCCAAGACGGAGGGAGAAGGAGACGTGGCAGACGGAagcagtgaaggagaggagagagattccATAGAGGAGGTGGAAGATGACAAAGGCAAACTGAAGGAAGACAGGTCCGGGTTCAAACGGAAAAGGACGGCCTCCTCTAAGTCATCCAAGCTGTCCAGGATCTCgtctggagaggaggatctggaggacGGGAAAGAGGAGGATCAGAAGAGCGGATCGGAGGGGGGAGACCCCGATAACGGCATCATTCAGAACACTGCCGACAGCAAGAACCAGTTGCTGAGAGAAGAACATTAGGTGCTGTGGACACCTGCCGAGGGAAGGGAAGGTATTCATTGTTGCTGTCACGTGATATTGGAATGGTCAAACTCCCATAATCACCACCTCTAGCACTACCTGTAATGGGTCATTCACATCCATCTCTATGTAGAAAATAACACACATCTACTACAGTATATCACTAAATCTGTACAACTCTGCTTCAGCCAGTAGACGCCCAGGCTTGACTACAGCCAAGGTAACTAGCTTcaaaacaacatacacacacacttgtgtcCCCATCTCTTTCAAAATCAGAACACCACATTTCATATCTAAACAGTGTAAAATAAGCATCAATCGATATTTATATTGACCCTTAGCCTCCACTATCTGATTCCATCAATGATTCATATAGGTAAACATGTTAGCTATGTTTGATAAAACTTCtatgaatatacagtataatatactcCCCTGTGGTCTATGATGATTGATATATGTTGGGTATTGCAGTGTTCTGATCATACTAGTTGTATCTTGGATTTGCTTTTATAAAACAATGGTTTAAGGGGAGGGACTAgcttagggttgcaaaattccagtacaTTTTCAAAACTGTccagttttccagaaatcccggttGGAATAATCCTgcaatcaggagggaataagcaggaaatccagtgATCATAAGACTGGAATTCATGGGAAACCTgagaatttggggaaagttactgGAAATTTGAAATGTGTGTTAAACTGACTGTATAACATATCCATATCACTCAGCACTGTATGTTGCTCTTTTATGTAACCGCAAAAGATGAATGGGAAAAGACATAGATAAATGTAGGAAGTGTTGTGCACAAACCGACTCTCTAACTCTCTATCTATATATTTGACTTTGGTTGTAGAGTATATGGCCAGTATTCTACCTGACTGATCTAGCTAACTACtcgtctgcatcccaaatggaatcctaccacctacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactg
>XM_036964081.1
gtagtttaTGCTCATGTACATGGGAAGGTGTGCCCCTTTCTATCCAATGAGATAATCTGGGCTCCCCCAGAAGCAAAAGTTCCCTACAGACTCTTTAATCGCGGTGTTCTTTGCACAAGGCTGGCACACAGTCATTATGGCTCGTCCACGGCCGCGGGAGTACAAGGCAGGAGATTTGGTTTTTGCGAAGATGAAGGGATACCCACACTGGCCAGCGAGGATTGATGAGCTTCCAGAGGGAGCTGTCAAGCCACCTGCTAATAAATATCCCATATTTTTCTTCGGCACACATGAAACTGCCTTCCTGGGCCCCAGGGATCTCCTACCATACAAGGAGTACAAGGACAAGTTTGGCAAGTCCAACAAGAGGAAAGGTTTCAACGAGGGTCTGTGGGAGATCGAGAACAACGCAGGGGTCAAATTCACCGGCTATCAGGCCATCCAGCAGCAGAGCTTTTCCAAGACGGAGGGAGAAGGAGACGTGGCAGACGGAagcagtgaaggagaggagagagattccATAGAGGAGGTGGAAGATGACAAAGGCAAACTGAAGGAAGACAGGTCCGGGTTCAAACGGAAAAGGACGGCCTCCTCTAAGAAGTCATCCAAGCTGTCCAGGATCTCgtctggagaggaggatctggaggacGGGAAAGAGGAGGATCAGAAGAGCGGATCGGAGGGGGGAGACCCCGATAACGGCATCATTCAGAACACTGCCGACAGCAAGAACCAGTTGCTGAGAGAAGAACATTAGGTGCTGTGGACACCTGCCGAGGGAAGGGAAGGTATTCATTGTTGCTGTCACGTGATATTGGAATGGTCAAACTCCCATAATCACCACCTCTAGCACTACCTGTAATGGGTCATTCACATCCATCTCTATGTAGAAAATAACACACATCTACTACAGTATATCACTAAATCTGTACAACTCTGCTTCAGCCAGTAGACGCCCAGGCTTGACTACAGCCAAGGTAACTAGCTTcaaaacaacatacacacacacttgtgtcCCCATCTCTTTCAAAATCAGAACACCACATTTCATATCTAAACAGTGTAAAATAAGCATCAATCGATATTTATATTGACCCTTAGCCTCCACTATCTGATTCCATCAATGATTCATATAGGTAAACATGTTAGCTATGTTTGATAAAACTTCtatgaatatacagtataatatactcCCCTGTGGTCTATGATGATTGATATATGTTGGGTATTGCAGTGTTCTGATCATACTAGTTGTATCTTGGATTTGCTTTTATAAAACAATGGTTTAAGGGGAGGGACTAgcttagggttgcaaaattccagtacaTTTTCAAAACTGTccagttttccagaaatcccggttGGAATAATCCTgcaatcaggagggaataagcaggaaatccagtgATCATAAGACTGGAATTCATGGGAAACCTgagaatttggggaaagttactgGAAATTTGAAATGTGTGTTAAACTGACTGTATAACATATCCATATCACTCAGCACTGTATGTTGCTCTTTTATGTAACCGCAAAAGATGAATGGGAAAAGACATAGATAAATGTAGGAAGTGTTGTGCACAAACCGACTCTCTAACTCTCTATCTATATATTTGACTTTGGTTGTAGAGTATATGGCCAGTATTCTACCTGACTGATCTAGCTAACTACtcgtctgcatcccaaatggaatcctaccacctacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaact

Function

NR:

description
hepatoma-derived growth factor-related protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964082.1 False 2258 mRNA 0.43 6 42940157 42954579
XM_036964081.1 True 1801 mRNA 0.44 7 42940158 42954704

Neighbor

gene id symbol gene type direction distance location
LOC110526696 LOC106562729 coding downstream 23332 42906669 ~ 42916825 (-)
LOC110526693 LOC106587688 coding downstream 170906 42745514 ~ 42769251 (-)
LOC118944567 NA coding downstream 206587 42731246 ~ 42733570 (-)
LOC110526688 ankdd1a coding downstream 231404 42686880 ~ 42708753 (-)
LOC118936599 LOC106562638 coding downstream 271414 42647765 ~ 42668743 (-)
LOC110526985 LOC106592271 coding upstream 9590 42964294 ~ 42987282 (-)
LOC118944425 LOC106562717 coding upstream 207064 43161768 ~ 43163012 (-)
LOC110506858 LOC106562715 coding upstream 225303 43180007 ~ 43198177 (-)
LOC110506867 LOC106587795 coding upstream 473954 43428658 ~ 43439196 (-)
LOC118944426 NA coding upstream 826226 43780930 ~ 43792853 (-)
G2031656 NA non-coding downstream 7638 42930230 ~ 42932519 (-)
G2031647 NA non-coding downstream 28734 42911117 ~ 42911423 (-)
G2031638 NA non-coding downstream 69637 42870097 ~ 42870520 (-)
G2031538 NA non-coding downstream 196205 42742633 ~ 42743952 (-)
G2031633 NA non-coding upstream 7492 42962196 ~ 42963888 (-)
G2031663 NA non-coding upstream 19405 42974109 ~ 42974393 (-)
G2031671 NA non-coding upstream 28077 42982781 ~ 42982999 (-)
G2031673 NA non-coding upstream 29412 42984116 ~ 42984383 (-)
G2031677 NA non-coding upstream 32765 42987469 ~ 42987814 (-)
LOC110513924 rasl12 other downstream 318611 42616181 ~ 42958849 (-)
G2031343 NA other downstream 381254 42557797 ~ 42558903 (-)
G2031286 LOC106562727 other downstream 478842 42459257 ~ 42461315 (-)
G2031259 NA other downstream 570248 42368254 ~ 42369909 (-)
G2031225 NA other downstream 593432 42343282 ~ 42346725 (-)
G2031974 NA other upstream 229932 43184636 ~ 43185724 (-)
G2032150 NA other upstream 614456 43569160 ~ 43570054 (-)
G2032544 tmc3 other upstream 924489 43879193 ~ 43881732 (-)
LOC110526988 LOC106587743 other upstream 944796 43896015 ~ 43949012 (-)

Expression


Co-expression Network