LOC110519300 (sels)


Basic Information

Item Value
gene id LOC110519300
gene name sels
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 45296009 ~ 45302288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963928.1
cattgacacacactttcacactcaccacatacgctgctgctactgtcttatctatcctgttgcctagtcactttacccctacctatatgtacataacTACTTCAATTACCTTGTAAACCTGCACATCGACATTTATTGGACTCTGCCGACACCTCGTGTGTGACTGGTGTCTTGCTCAGAAGCACGAGAGGCTTCCACGTCATCTTTACTGGGTTGGTGTTTATAACACATAGACCAGGATATTGCACTTTTTGTCAACTCACGGAGCATGGAAAAGTAGCTAGTTGGAGCTGTGGTGACATTGAAACGCATAATTAGAGGACTATAGAGTCACCAATACGTTTAGAAATGGATGACGATGTTACCATTGAGGACGAAGGTGGACCAGAAATACAGAAGACACCCCTTGGAAACCAGGATTTAAGTTTCCTGCAACAAACTGTCGGACCATTGGTGGCAGAATATGGATGGTATCTGTTGTTCATGTGTGTGGGGGTCTACCTGGTGGTCCAGCACCTGAGCAAGAGGAGAGCCAGCCAGGGACAGAGCAGCTCGGCGTCTGGAGCAGTGCAAGATCCCAATGCAGTAGTGAGGAGACAAGAGGCACTGGAGGCGTCCAGGAGAAGAATGCAGGAGGAGCTGGATGCCAAGGCGGCCCTCTTCAGGCTGAAACAACAACAGctggaggaggagaagagacaacaGAAAATTGAGATGTATGACAGCATGAAAGAGGGGAGGAGTTACAGAGGAAAAGCAAAGGCAGCCCAGAACACTGAAGAGGCCAGCACATCGACTACAGTGTTGAAAGCAAAGACTGACAAGAAGCCCCTACGGAGCAGTGGCTTTAATCCCCTGAGCGGAGAGGGAGGTGGATCCTGTGCGTGGAGACCAGGAAGGAGAGGGCCGTCAGCTGGCGGCGGATGAGGTTAAAGGAGGTCAGAGCCACAGGCTCAGGGTAGACATCTCCCCCTTAACCCGGATCTAGGATCAGAATACCCTACTATCGTTCCTAACATGAACTATTAGGAGGATGGAAGAAATATCTGACCCTGTATCTGTGGCTAGGTGTGACTTGTGCCTACTCTGAGGTGACCTGTGAACTCTGATATTTGACCCATCCgagtcacacacactgacccactGAAGGAAGCTGCCAGCAATCTCAAAGCCCTCTTAGTTATTGATCTAAATCAATCTGTTATTTGTTACTCTCTGTGTTTGGGTTTAGGGATTGGTTTCACAACTGTCTGTGTTTTAGATCATGTTGCCTCAGTAATATTAGCATTGTCAAAAAATACAATGTGTTGCCACATGATAACGATGGATCCTTTCTGTTTTACTGCCTTTGGACAACTTCAAACTAACCAGTGTTGAAAACGATTGTCTTGTTTCCACATTAAAATTTTGGCTTATTGAATCATCTTATTTCAGGACACCCGAGAAGGACTTCTGAGTACGACAGTTTCTAATGATGCTATTCCTGTAAATGGCACCTGTGCCAGTGGGTTTGGCTGATGACtttcagtgtatgtgtgttttcttGTCTTCTTTTGGGGTTGGCATCTGTGTAAACTTTCAAATGTGCGCTGCCTACCAAGGCTTCATGTTGTGAGAGTAGATGCTAGCCAGATGGCTTTAGTAGTGCTGTGCACCATACTGCTTTTTATACAATTACATAAATCAGATGTAACCGTTAGTCATcgtgttatttattggaataTCAATGATCATCAAGCAATTTTAGTTACTGAGAAATAAACTGACCTGCACCTTTTTATCACAATAAAGATATTATAGATAA

Function

symbol description
sels selenoprotein S

NR:

description
selenoprotein S-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0008430 selenium binding molecular_function

KEGG:

id description
K14025 SELS, VIMP; selenoprotein S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963928.1 True 1804 mRNA 0.45 6 45296009 45302288

Neighbor

gene id symbol gene type direction distance location
LOC110514694 chsy1 coding downstream 567 45206844 ~ 45295442 (-)
LOC110506899 LOC106587824 coding downstream 333154 44957515 ~ 44962855 (-)
LOC110506178 cers3 coding downstream 339013 44932382 ~ 44956996 (-)
LOC110506903 LOC106562480 coding downstream 372977 44705368 ~ 44923032 (-)
LOC110506176 LOC106562588 coding downstream 645037 44595437 ~ 44650972 (-)
LOC110506182 tecta coding upstream 36279 45338567 ~ 45358724 (-)
LOC118944460 NA coding upstream 174584 45476872 ~ 45479193 (-)
LOC118944461 NA coding upstream 192045 45494333 ~ 45495692 (-)
LOC110511667 kiaa1549l coding upstream 198796 45501084 ~ 45647805 (-)
LOC110526724 LOC106562738 coding upstream 346267 45648555 ~ 45743048 (-)
G2033814 NA non-coding downstream 8317 45287412 ~ 45287692 (-)
G2033812 NA non-coding downstream 12040 45283354 ~ 45283969 (-)
G2033807 NA non-coding downstream 25524 45270260 ~ 45270485 (-)
G2033804 NA non-coding downstream 32487 45263098 ~ 45263522 (-)
G2033802 NA non-coding downstream 41570 45253498 ~ 45254439 (-)
G2033817 NA non-coding upstream 2093 45304381 ~ 45305206 (-)
G2033820 NA non-coding upstream 6389 45308677 ~ 45308937 (-)
G2033822 NA non-coding upstream 10202 45312490 ~ 45312804 (-)
G2033830 NA non-coding upstream 22164 45324452 ~ 45324848 (-)
G2033846 NA non-coding upstream 72393 45374681 ~ 45375270 (-)
LOC110526988 LOC106587743 other downstream 1390769 43896015 ~ 43949012 (-)
G2032544 tmc3 other downstream 1414277 43879193 ~ 43881732 (-)
G2032150 NA other downstream 1725955 43569160 ~ 43570054 (-)
G2033970 NA other upstream 452708 45754996 ~ 45759682 (-)
LOC110506195 LOC106562605 other upstream 507814 45810102 ~ 45825416 (-)
G2034336 NA other upstream 941764 46244052 ~ 46244592 (-)

Expression


Co-expression Network