RNA id: XM_036963359.1


Basic Information

Item Value
RNA id XM_036963359.1
length 1779
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110506178
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44932382 ~ 44956996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGAGGAGTAGCTCCTATTCTCCTGTCTGCGTTATCTGGAGAACAATGCAAACAATCCACAGATTATCACCTGAGGGCACCTTTGACTGCAGGTAGCAGGGTTagtgtgcctctctctctatctctctgtgtgtgttgcgtCGTGACACTTCTCCATTATCGTCCCTCTACGACAACGTAcctggaggggaaggaaaaaaaCTCCTGTCCAATTGTGCCTGAGCTGGGTGTGACCCTTTAAAGAATGTCAAacaaagacagggagagggagagagagcctgcCTACTGAATGGAGGGACTGTCACGCCTGTTTGTTTCCCACAGTCAACATTACATCAACAGCTCTAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGAGTGAGGACAGGACCTACCTTACCTGGTTTCCCTACTGAGGGATGATTGACACCCTATATGAGTGGATCTGGTGGGACCGCTTCTGGCTGCCAGTCAACCTGACCTGGGCGGACCTAGAGGACAGAGATGGGCGTGTCTACGCCAAAGCCTCTGACCTCTATGTGACGTTGCCTTACGCCATAGGCTTCCTACTGGTCAGATACCTGTTCGAAAGGTTGATAGCCACGCCACTAGCAGCCTCAGTGGGGATCCGGGAGAAGGCCAGACTGAGAGTACCAGACAACCCCATCCTCGAACTCTACTATCTCTCTCACTCCAGAAACCCTGGCCAGgcaGTTATAGATGGTCTGTCTAAGAAGAGCGGCTGGTGCGTTAGGCAGGTGGAGCGCTGGTTCAGAAAGAGAAGAAACCAGGATCGTCCCGGAGTACTGAAGAAGTTCAGAGAGGCTAGTTGGAGGTTTGTGTTCTATCTGTTGGCGTTAATTGGAGGAGTTGTGTCCCTGTATGATaaaGAATGGTTTTATGATACGTGGGAAGTGTGGAATGGATTTCCAaaacagactaTGCTGGATTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTCTATGGTTCGCTTCTCTTCAGAGTCACTTTTGATGTCAAGAGGAAGGACTTTAAGGAACAGATCATCCACCATTTGGCCACCCTGACGCTGCTGTCCTTCTCTTGGTGTGTCAACTACATCCGTATAGGAACCCTGGTGATGCTCATCCACGATGCCTCCGACGTCCTGCTAGAGTCTGCCAAGTTGTTTAACTATGCCAAATGGGAGAGAACCTGCAACAGTCTCTTTGTGGTGTTTGCCATTGTGTTCATGGTAACCCGACTGATCATCTTCCCATTCTGGCTGATCCACTGTACGTGGGTGTACCCCACACTCCAGTACCCCCCGTTCTTTGGTTACTACTTCTTCAACGTCATGCTGGTGGTCCTCCTGTTCCTGCACATTTTCTGGGCCTACCTCATCCTGCGCATGGTCAAGAAGTTCCTCTTCGGCAAAatGACCAGAGATGAAAGAagtgatgatgaggaggatggtGACGAAAGCAGTCTGACTGAAGAGGAAAAAGAGGAGGGCAGTTATCGTTACGGCAACGGTTCTGGACTGGGCACAAAGGAGGGCAACAACGGCTGCTTCAGACACTTATCTCTCTCGGAGAACGTCTGCCCATCAAAAACCGTCTACTGACCAAGCTCGCGTCGTGATTGGCAGAGCCCTGCACCAGAGGCAGGGAGTGGTGGGATCGAGGTCATAGGAGAAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2325814 lncRNA downstream 93057 44835057 ~ 44839325 (-) True G2033270
TU2325816 lncRNA downstream 93478 44836967 ~ 44838904 (-) True G2033271
TU2325803 lncRNA downstream 109288 44821151 ~ 44823094 (-) True G2033262
TU2325792 lncRNA downstream 116738 44811275 ~ 44815644 (-) True G2033256
TU2325765 lncRNA downstream 184473 44746772 ~ 44747909 (-) True G2033230
TU2325865 lncRNA upstream 7202 44964197 ~ 44964921 (-) True G2033313
TU2325855 lncRNA upstream 14303 44971298 ~ 44971540 (-) True G2033303
TU2325857 lncRNA upstream 15375 44972370 ~ 44973698 (-) True G2033305
TU2325856 lncRNA upstream 17187 44974182 ~ 44974796 (-) True G2033304
TU2325870 lncRNA upstream 18679 44975674 ~ 44976026 (-) True G2033317
XM_036964480.1 mRNA downstream 9350 44705368 ~ 44923032 (-) False LOC110506903
XM_036964481.1 mRNA downstream 9350 44705368 ~ 44923032 (-) False LOC110506903
XM_036964482.1 mRNA downstream 9350 44705368 ~ 44923032 (-) False LOC110506903
XM_036963925.1 mRNA downstream 281410 44595437 ~ 44650972 (-) False LOC110506176
LOC110506895 mRNA downstream 298456 44631614 ~ 44633926 (-) False LOC110506895
XM_036963357.1 mRNA upstream 520 44957515 ~ 44962855 (-) True LOC110506899
XM_036963293.1 mRNA upstream 250721 45207716 ~ 45295442 (-) False LOC110514694
XM_036963928.1 mRNA upstream 339014 45296009 ~ 45302288 (-) True LOC110519300
XM_036964335.1 mRNA upstream 381572 45338567 ~ 45358724 (-) False LOC110506182
XM_036964336.1 mRNA upstream 381572 45338567 ~ 45358724 (-) False LOC110506182
TU2325823 other downstream 9365 44853853 ~ 44923017 (-) True LOC110506903
TU2324949 other downstream 1027142 43899500 ~ 43905240 (-) False LOC110526988
TU2324940 other downstream 1050650 43879193 ~ 43881732 (-) True G2032544
TU2324491 other downstream 1362328 43569160 ~ 43570054 (-) True G2032150
TU2324286 other downstream 1734554 43191698 ~ 43197828 (-) True LOC110506858
TU2326479 other upstream 382102 45339097 ~ 45358692 (-) True LOC110506182
TU2326571 other upstream 626763 45583758 ~ 45588702 (-) True LOC110511667
TU2326647 other upstream 798001 45754996 ~ 45759682 (-) True G2033970
TU2326675 other upstream 853107 45810102 ~ 45812172 (-) False LOC110506195
TU2326672 other upstream 855292 45812287 ~ 45816126 (-) False LOC110506195

Expression Profile