RNA id: XM_036964481.1


Basic Information

Item Value
RNA id XM_036964481.1
length 9823
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110506903
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44705368 ~ 44923032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCACTAACTTTGTGGAAGTTCCCTGCAGTCCTGGTTCGCTGTGCAGGCGCGTACACCCTCTGCAGTCACAGCTAGTCTTTATCATGTATGACAGCCATGCTCCGCAGCTTCTCCTGTCTATATTCCTCTTCTGTTTCGGAGTGAAGGCGATGACTGATCACTCCTGTTATGACACGGACTTGGTGGACATGGTGGTCCCCGTGGAGCTCTCTGGAGAGGAGGCTCACCTGTTGCATGACTCATCCAGGCGCAGCGCGCGTCGGCGCGGCCAGCGCTCTGTCGATTCCCGGGGTGGACTAAACTCTGTGGAGGACACCTTATTTTTCTCTTTACCTGCTTTTGGAAAAGACCTGTACTTACGCCTGAAAAGGGATGCCGCTTTTCTGTCTGAGGGGTTTGTGGTCGAGGAGAGGGGAGGCGAAACAGACCCCCCTAAATGGTCGCACCTGGCCAGAGACCAGCTCTGCTTCTACTCGGGATGGATTGTCAACCACACCGACTCTTTTGCCTCCCTCAACACCTGCAGCGGTCTGacTGGACTGGTCTATACAGGAGAGGACAGTCTCTTCATCCAGCCGGTCAACAGTTCTTCCGACTCCTTTTCCGGGCTGCAGCACAGGGTGGTCCGACACCGCCGCTCAGCCAAGACCAGCCCTCCTTCTGCCCCTCCCCCTGGATTCACAGCTGCAGACAAGCAGCCCAAGGACTGCGGCACCattccagTGAGAAAGAAGAGGCAGAAGGGAGTGGAGGAGGGCCGTAGAAGGAGAAACACCATCCATCTGAATGGGTTGTATACGGTAGAGACGGTGGTGGTGGCAGACTCAGACATGGTGCAGTACCACGGGGCAGAGGCCGCGCAGAGATTCCTGCTCACCGTCATGAACATGGTGTACAACATGTTTAACAGCAAGAGTCTGGGCGTCAGAATCAACATACGGGTCACCAAGCTGGTCCTGCTCCACAACCGCCCAGACAAGCTGAAAGTGGGCCACCACGGAGAAAGGGCCCTGGAGAGCTTCTGTCAGTGGCAGTGGGAGGAGTACGGCGGCCCCCGTTACTTAGGCAACAATTACGTGCCCGGGGGCAGGGATGACATCCCACCTGTGGACACGGCCGTGCTCGTCACTAGGACTGACTTCTGCGTGCACAAAGACCAGCCCTGTGACACAGTGGGTATTGCCTATCTGGGAGGGGCATGCAGCTCCAAGAGGAAGTGTGTTCTGGCCGAGGACAACGGACTCAACCTGGCCTTCACCATAGCCCACGAGCTGGGACACAACATGGGGATGAGCCACGATGACGACCATGCTACCTGTACAGGCCACTCCCACATCATGTCTGGCGAATGGGTGAAGGGCCGTAACCCCAGCGACCTGTCATGGTCCCCCTGCAGCCGTGACGACCTGGAGAAGTTCCTCAGgtccAAAGCCAGCAGCTGTCTGCTCCACACAGACCCCAGAAGCCGCTACAAGGTCCGCCTGCCACCCAAGCTGCCAGGCATGCACTACAGTGCAGACGAACAGTGTCAGATCCTCTTTGGAACCAACGCCACCTTCTGCAATGACATGGAGcaccTGATGTGCGCGGGCCTGTGGTGTTTGGTGGAAGGAGACAAGTCCTGTAAGACCAAGCTGGACCCTCCTCTGGACGGCACAGAGTGTGGAGctgacaagtggtgcCGGGCAGGGGAGTGTGTAAGTAAAAGCCCTATCCCACAGCATGTGGATGGGGACTGGAGCATCTGGAGTCAGTGGAGCCAGTGCAGTAGAACCTGTGGCACCGGAGCCCAGTTCAGACAGAGGAAATGTGACAACCCGCCGCCAGGTCCTGGTGGTAGTAACTGTCAGAAGGCCAGTGTGGAACATAAAGTGTGTGAAGGTCCTCCCTGCCCTAAAGGAACACCCAGCTTCAGAGAGCTGCAGTGTCTCTCCCATGACCGCCAGGCCGGCAAGAAGAAGAACAGCATATGGACCGCAGTCAATAACGATGaGAAGCCATGTGCCCTGTTCTGTTCCCCTGTGGGGAGAGATGCCCCCATCCTGGTGGCAGAGAGAGTGATGGATGGAACACCATGTGGACCCTACGAGTCAGACCTGTGTGTCAATGGCAGGTGTcagAAAATCGGCTGCGATGGCATCATCGGCTCGTCAGCCAAGGAGGACCGCTGTGGGGTGTGTAACGGAGACGGACACTCCTGTAAGATTGTCAAGGGAGACTTCAACCACACCAAGGGCAGGGtctcctcTAGCCACTGTAAGAGGGTTTCTACCTGTGTGATGGCTAAACCAAGGGCTGTCCCCAAGTGTTTCTCATGTTACATCGAGGCTGCTGTCATCCCCGTTGGTGCTAGGAGAATCAAAGTTGTGGAGGACAAGCCCTCACACAGCTTTctggCAATGAAAGACTCTACCAAGAGGTCCATCAACAGCGACTGGAAGATTGAGCTTCCTGGAGAGTTCCAGCTGGCCGGCACTACAGTGCGCTACGTCCGGAGAGGACTCTGGGAGAAAATGTCCGCCAAGGGACCCACCAAGACCCCGCTGTACCTCATGGTGCTGTTGTTCCATGACCAGACCTATGGGATACACTATGAGTACACAGTGTCTCTGAACGTAACTGAACGTGATGATGTCAGTGAGGAGCAGAGAGCACCAGAGCACCTCTACCTTTGGACACACAGCTCCTGGCAAGACTGCAACGTACAGTGTGGAGGAGgtgaGAGGAGGACAGTGGTGTCCTGTATGAGGCTGGTCAATAAAAGCATGACTCTGGTGAATGACAGCCTCTGCCAACCAGAGAACAGGCCGTTACCCCAAGTACGACGCTGCAACTCACACCCCTGCCAGTacaggtgggtGACAGGGGAGTGGGGCCAGTGTTCGGTGACGTGTGGGAAGGGTCTCCAGCTGCGTGAGGTGGGCTGTGTGTACCAGCTGCAGAACGGATCCCTTATCCACACACGGGACTTGTACTGCCAGGGGGGCAAACCCCCCGCCCTGCAGGGCTGCGAGGGACGCCACTGCCTCACTGCCTGGGAGGCCTCTGAGTGGTCCAAGtgTTCTTCAGACTGTGGCAGTGGGGTCCGTCGGAGGACAGTGAGGTGCACCAACCCCCAGGGGAACTGTGACCCCCTCTCTCAGCCTGCTGACCAGGAGCCCTGTGAGGACCACTCCAAATGTTACGAGTGGAAGACTGGGGACTGGTCCAAGTGCTCATCATCCTGTGGGAAGGGCCTGCAGTCCAGAGTGGTCCAATGTATGCACAGAGTGACAGGTCGCCACGGTAATGACTGCCCCGTGGTGTTCAGACCACCCACCTACCGGCCCTGTCACCAGGAGGCCTGCAATGACAAAGTCAACGTCAACACCATCACCTCCCCCAGATTAGCTGCTCTGACCTACAAGTGCACAGGAGACCAGTGGACTGTGTACTGCCGTGTGATCCGAGAGAAGAACCTGTGCCAGGACATGAGATGGTACCAGCGCTGCTGCGACACCTGCAGAGACTTCTACGCCAACAAAACACCCCGCAAGAGTTAATGATGaaagcactcacacacatactgtacacagacagacacacacttcaCCTAGGGCTACGACTTTAGATGCTTCTGTAACACTTGACTTAAAGCTTGCGGGTATAATGCTTTGTAAGTCGTTATAAGCATGAATGAGcctttataatgtgttataataaggcttatgatatgatatgtctcTCTATGTATCAGCATGTTAACCGACTCAAAATGTCTGTTATTTAACCTGCTTGAGGAGATGATACTAAATATTGTAAGGGTCTCGTGGCAGGTCTTTATGCCGGCAGGCTTTAAGTAAAGAGTTACGGATGTTTCTACTGAATTATTCAGATTCTTATTATTAATTATAGGACATTCAATTTTGGAGAAAACAAGTGGAAATGAGTGCAGAGACCATTTCAAGTGGGATCATAAGCTTGCTGTTGTCATGAAGACTTGAAAACCTTCTGTAACTTGTTTTATTGCTGTAAACCAAAGCGAGGGACTTGGAAGTCTGGGGAGTCTCTCGGTGGGTAGCCTGTCGCATCAACGTTTGTTGTACAGTGTGATTTACCATTAGCGTTAACATATGTGATAACTCTTTATGTGGAAAGGTCATTGTTGTCAGATTGTCTATAGATGCTCAGTGAACTATCAGAACATGTCTGATCTTCTTCCCCGGGCCCTGAAGAAGTGGATGTGGATTAAGGCAGCCaccctcacctctctgattcggaggggttgggttaaatgcggaagacacatttcagttgaatacattcagttgaacaactgactaggtatccccctttcccttactTACATAGATAGAATGTATGTacatcacaggaggctggtgaggggaggactgctcataataatggctggaatggaatggtatcaaatgtttgatgtgtttgaaaccattccatttattccgttcCATCCGTTACTATGAGCCCAtccttcccaattaaggtgccaccagccgcctgtgacatacatacagtacttacacacacatacattaaaaGACCTGTAAGGGCTTTGTTATTGCATGTTAACAGAGGTGCAGTTGACATGTAATACATCTAAATGGTAGTTGGTACGTAGTCTGAGCATGTAGATCTGTAGGGGACTATCCAGATAAAGTGGGCCTGTATATTCTCTTGTGTTTAGTTCAGCTGGCCCTGTATTCACCAAGCCACTGGCTGGCCACTCACTAGACTGGGCCAAGAGACCTGgctcgtgttcattaggcaccagaTGGACTGAAACAGGTAGGGACTACTTGAACTTGTTCAATAAGAAACGCTAATTTTCTTTTTTCCGCTGCAACGTTTGAAAACTTTTCCCATTGTGTGCTTTGATGAACATGACCCGGGTTTCTTCTCTTAGGGACAAACCGTAACTTGATGTCTTGAGAGAACGTGAATTTCGCATTGACATCAATCCATAAGCTAAGTCTTGGTTACACATTTggatctcaagttaggatttgtCCCTTAGTTCCACGATAGATTATGTGTActtacattttgttgttgttttttgttgatgTCATTGTCATTTTTTGGCGGTTGTTGTTATTTAAAACTAGTCAGGAGCCGTTGTAAGGTACTGTAGTTCTACATTGAAATTATCAAGCTAACGATAGGATAGGCCTGGTTCACTATTCCCTAGGCTCACCTGAAGGCCTTGGACAGCCCATGTAGCATCCGTCTCTCTCCTGAGGATCCAATGTAGGAGACAGTGCAGTGGTGGGGGTGTAATTTAAGAGAAGATTAGATGTATCTTAAGTTACTGTCGTCCTACAGTTAACCACATACAGTGTATTCAGTACTGTATATGTGAGTGGAATCCACAACCCAGTGTCATTAACAACTTGCTCCAACTACGCTCCATGAACCAACTGAGCAATCTGGGTGAAGCAGGTTGCAGCTATATTGTTAGGTTCAATGTAAAACACTAATCCCTGTATCATGTGTGTATCTGTTGTCCTCCCTTGGTGCTTGGTACATCGTCATGACGTAAACTAGTCTCTGGTTTTAAACTTCACACTTACTCCAAACCAGGTGTTTGTTAACATTTCCATACATCATGAAACTTGAAATTGGTTTTAACTATTAAACAGTAATTCAAACACAATGTGAGGCTTACACCGATTTCAACAGCTTGTCCTTATGCATGAGTGTGGCAAACGTAGACGTCACAAACATCTACATGTAAACATTAATGGAGGCAGCGTTATGTTTGCTACAAAATGATGGTGCAGTAGATAACTGACTGTAAATAATGTACAGTTAGTTATCACAGACATTCTTTATCCATAAATGACGAAGTGTCTCCAGTTGTGTTCCCGTTTTACAGATTATGACTTAAAGGGGTAATCTCCAGTTGTGTTCCCGTTTTACAGATTATGATTTAAAGGGGTAATCTCCAGTTGTGTTCACGTTTTACAGATTATGATTTAAAGGGGTAATCTGCAGTTGTGTTCCCGTTTTACAGATTATGATTTAAAGGGGTAATCTGCAGTTGTGTTCCCGTTTTACAGATTATGATTTAAAGGGGTAATCTGCAGTTGTGTTCCCGTTTTACAGATTATGATTTAAAGGGGTAATCTGCAGTTGTGTTCACGTTTTACAGATTATGATTTAAAGGGGTAATCTCCAGTTGTGTTCACGTTTTACAGATTATGATTTAAAGGGGTAATCTCCAGTTGTGTTCCCGTTTTACAGATTATGATTTAAAGGGgtaatctgcagttgctacatacattttttgatTTATAAATGAGCTCAGGTCAACTGTcttccccatcagaaccccaaatgcTTGTTttacatgtaaacaaacactatgaagccttaaaacatggttaaaactatcagcttcatatcatggatggtcagtccttgcatccatagctcggtCTATGAATTTgatagtggttacatttctccagactTTTTTGATTGTTTAAACTGCTGATTGACGCTTTCCAAGTGTATTACGTAACATTCAGCACTGTAGTGTATATCTTTGGCACTGGCCTAGTTCTCCTGGTTCTTGGAGTTGGCTGAAGCAGAAACAGATCTAGAGTTACCCCCAGGTAGAGACCCTGTCCCTCAGGTAGAGACCCTGTCCCCCAGGTAGAGACCCTGTCCCCCAGTTAGAGACCCTGTCCCCCAGGTAGAGACACTGACCCCCAGGTCAGGAAGACCCCAGGCAGAGACCTTGGCCCCCAGGTCAGGAAGCCCCCAGGCAGAGACCTTGGCCCCCAGGCAGAGCCCCCAGTATTGGGATAAGAGCTgatatgggcccaggtcaaaacaGAGAAAACAAACAGCCCAGCTCTCAAAACTCCTGAGTCCCACATTTCCAACCCTTCAGAGCAGAAACCATTAATCAATCAAACAATCTAACATGGTACTGTTTACCTATGTGTTCAGAACACGTAGGACAGAGGACCACCCTGGcggtaccgtgtgtgtgtgtttgcatgcgtgtgtgtaatCGATGATTGTCTCCGTGGTACGCGCCGTCAGTGGGGAGATCTTCATTGAAAAGGTCACACTGTTCACACTTTGAAGACAGACTTGCAAAGAAAACATCCCggttaaagacatgctccggtactTTGGTGAATAAGAAAGTATTTTGTAACCCTCCCCCTTTGgactggatgtgtcaatgtgtagttcatacatgcataatctatgagcagaattactgtcttgCCTCAATTAGCCAGAAATTCCTAGTTTGAAGCTGTGCCAAGCCATTTTCCTTACATTTCCCCCCTCGTGGGCCAGCCTcctagcaatttgagttctaGCCAATAAGCTTCAGCCCTtcgagtgacagctagcaagaggcTTGCCTAGTTATTCAATGAGGTTGGAGGGTGGGCCCAACGGCTCAgtggacgagagagagagcgagagagagagagaaagagagaggggcccATCACACAATAAATACTCATACAAAACCACAGTTAcacatcaattaaaaacacaactcCAATTCCTCAtccacagtaactaaacacaacagcctctgaataccccatatactcaAAAACAGATCAATATTGTTGACAAGTTTATAATAGGCAAGCTCAACCCTTAGTCTCGCTGCCAACATTCCCTCCAGCATtcccaccacatccacagacccctGTCCCCGAATACTGTTCTTTCGGGTCTCCATATCGCTAATTTTGCTGCCCCTAACACAAAATtaagcaacacaactacaccctTTTGAATGAACCTCTACTTTGgcccaaatatatacagttgggaaGAGAAAACCTCTCCCAACGTTGAGAACCAATCAGTGATCAGTTCAATCACCCCGACCAACCTGGGACACAGTAAAAACAGATGTGCCAGAGATTCAGACTCAgcacagaatggacacccctccccaacagtagggtccaggtgtaccagatgcatgttggtggctatggctccatgtattatcctccatTGGAGGACAGCTGTGCTCTTATCAATAGGCAGTTTGTATAATGATCGCCAACAGCCTTTTGGAGAGGCACCTGGAGCAAGCACACCCGCCCACCTCGTCGATTTTACCCCTTCCAGGGAAGAGGCATGGCAGCACTAACAATCAGTGcagggaacacataatccagaccctccttCCACCGATCAGAATTGGAAGTGTCAGTCACATACTGCAGAAGAAGCACTGGCAAGGAGTCACATACCTCAGCGACGACCTTCCTCAGTAGGCGAGATGATCGGATCCCCGCTCTTTCTCCCAGCTCCTCCAACGATCTGCTCCTGCTCCGCATCAGATGACCCAGCTTGGTACACCCCACGCCTAACAGGCATGAACGTAGGCTAGCTGAACCCAAAACACTGGACTGGATGGCAGTGTTGTGAAAAAGAGGCTCTTCAAAAAGCCACATCCCTGGTGGCGTGCCAGCTTTACAGGACTTGACAAGGACTCTCCAAGCCTGCATAACAGACTCATAAAATGGAGTCAGGCCAGACAAATCACTCCCCTCCAGCTTTCAGAGGAAAATGTGCTTGTCTAAGCCCAAACAGCCCAGTATCCTCATCAATGTGTAGGCTGTTTCGACCCAGCTAAAACCGTCTCTGTACAACAAACTCTGGGCTGCTTGAAGCCGGAAAGCCATGATTCTAGAGGAAATGTCCACCAGGCCTTGCCCACCCTCGTGCAGTGGCAGGTACAGGGTGCAGCTTTAATCCAGTGTTGTCCAGACCAGAAGAAATTGACAAGGGACCTCTGAAGTTCTTGTATCAGACCCTTTGGTGGCTGCAAAATCATTAGTCTGTGCCACAGGTTAGAGGCAGCAAGATTATTAGCTACCAGTACCCTTCCCCTATAAGACAGCTGGGGCGGCACCCATTTTCATCTTGACAGTCTGGCacacaccttctccactacacCCTCCCAGTTATTTTTCTGAAAGACATCGGAGCCTAGAAAAAACCCCAAAGTCTTCATCCCATCTCTGCCCCACTGAAgtccccctggtaaccgtggagcggacaaCGTCTGAAGCTGACCTTCCCACAGCGCTTCACCCAATTGACTCTAGCTGAGGAGGCCCCCTCAAACACCTTTAGAGCGTTTGAGAGAACCTTAACAtcctcagcccctgtaataaaaACTGTCAGGTCATCTGCATACGCAGACAGTGCGATCATGGGACCCTTCATTACTCCCGGCACAGAGAAATCAGTAAGCTTCGCTcttaaaaaacaaagcattggTTCAATCGCGAGACTATATAACTGCCCTGAAATGGATGGGGCAACTCAAACCACCCACCTTCACCATACACGAGGCCCCAGCATGCAGTAAATTCATCCAAGACAAAATTCATCTCCCTTTTCGGGCAAGCATGTCGCTTATGGCCaacatccccacactcaaaacaccgtTGACTACCCGTACTAGCATAAGCCATATACAGTCTGTTGTCATACTTATCTTTAAACGATGACTCCAAAGTCTGCTCCGGTGagtccaaaaacataaacacctgtCGCCGAAATGACattacctgtttcaacgccgggtgtttgcaACCCAACGGGACAACCTTAATTGAACTGGCGAACTTCCCAAAGCGCAATAACTCGCGCTCCAATAGCTCATTGGGAATAAACGGCGGTACATTTGAAATCATTACCCTTGTTGACAGAGAAAAAGGCGGcgtaacttgaataaacattccTTTAATAAGTACgacatgctcaaccatacgatcaacaagacactcttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2325745 lncRNA downstream 4211 44700530 ~ 44701157 (-) True G2033210
TU2325594 lncRNA downstream 12606 44691869 ~ 44692762 (-) False G2033086
TU2325591 lncRNA downstream 12606 44692013 ~ 44692762 (-) True G2033086
TU2325565 lncRNA downstream 67564 44637501 ~ 44637804 (-) True G2033065
TU2325563 lncRNA downstream 70428 44634635 ~ 44634940 (-) True G2033063
TU2325865 lncRNA upstream 41165 44964197 ~ 44964921 (-) True G2033313
TU2325855 lncRNA upstream 48266 44971298 ~ 44971540 (-) True G2033303
TU2325857 lncRNA upstream 49338 44972370 ~ 44973698 (-) True G2033305
TU2325856 lncRNA upstream 51150 44974182 ~ 44974796 (-) True G2033304
TU2325870 lncRNA upstream 52642 44975674 ~ 44976026 (-) True G2033317
XM_036963925.1 mRNA downstream 54396 44595437 ~ 44650972 (-) False LOC110506176
LOC110506895 mRNA downstream 71442 44631614 ~ 44633926 (-) False LOC110506895
XM_036963665.1 mRNA downstream 184842 44499911 ~ 44520526 (-) True LOC110506884
XM_036963666.1 mRNA downstream 185509 44499911 ~ 44519859 (-) False LOC110506884
XM_036963667.1 mRNA downstream 186405 44499911 ~ 44518963 (-) False LOC110506884
XM_036963359.1 mRNA upstream 9350 44932382 ~ 44956995 (-) False LOC110506178
XM_036963360.1 mRNA upstream 9350 44932382 ~ 44956995 (-) False LOC110506178
XM_036963358.1 mRNA upstream 9350 44932382 ~ 44956996 (-) False LOC110506178
XM_036963361.1 mRNA upstream 9350 44932382 ~ 44956996 (-) False LOC110506178
XM_036963357.1 mRNA upstream 34483 44957515 ~ 44962855 (-) True LOC110506899
TU2324949 other downstream 800128 43899500 ~ 43905240 (-) False LOC110526988
TU2324940 other downstream 823636 43879193 ~ 43881732 (-) True G2032544
TU2324491 other downstream 1135314 43569160 ~ 43570054 (-) True G2032150
TU2324286 other downstream 1507540 43191698 ~ 43197828 (-) True LOC110506858
TU2324292 other downstream 1519644 43184636 ~ 43185724 (-) True G2031974
TU2325845 other upstream 16206 44939238 ~ 44956893 (-) True LOC110506178
TU2326479 other upstream 416065 45339097 ~ 45358692 (-) True LOC110506182
TU2326571 other upstream 660726 45583758 ~ 45588702 (-) True LOC110511667
TU2326647 other upstream 831964 45754996 ~ 45759682 (-) True G2033970
TU2326675 other upstream 887070 45810102 ~ 45812172 (-) False LOC110506195

Expression Profile