RNA id: XM_036963667.1


Basic Information

Item Value
RNA id XM_036963667.1
length 1537
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110506884
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44499911 ~ 44520526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACAGCCAATGACAATTGATTATGTGTAGTCAGTTGAGTAAATTACGTTGTGGGATCATTCTGCGTATGATGTCGGATGTAATCTGCTGGTGTAGAGACGAAGAAagagaggagtaggagagagggggaaattgGAGGGACATGGCCCAGGAGACCAACCAGAACCAAGGGCCGCTGCTCTGCACCACTGGCTGCGGTTTCTACAGCAACCCACGAAACAATGGCATGTGTTCGATGTGCTACAAGGACTTCCTCCAGAGACAAAACAACAATGGACGAGTCAGTCCACCAGTGTCGTCCTCGGCGGCGGTTAGCAGCCTGGGGGAGTCCCTCCTAGCCCAGTGCTCAGAGAGCAGTACTGTAGATGTGCCGTCAGCCACGACCCACACAGACACCAGGatgaacagggttgTATCTAGCCAGTCACTCTTAACGACAGCACCAGCTACTCAttcagaagaggagaggacagccaaGTCTGAAGAAGACCTGAAAACCGAAGAGATACAAGTGTCTGTATCGGTATCCGAGGACACGGACCAGGCCTCGGTAGACGGACAGGACAAACTCTCGGACTCAGACCAACCCAAAGCCGCCAAGAAGAATCGCTGCTTCTCCTGCCGCAAGAAAGTCGGCCTCACGGGCTTCGACTGCCGATGCGGCAATGTGTTCTGCAGCATGCACCGGTACTCAGACGTTCACAACTGCACTTTCAACTACAAGGCCGACGCAGCGGAGAAGATCAGGAAAGCCAACCCTGTCTGCGTCGGGGAGAAGATACAGAAGATCTGAAAGCAGGTTTGCTGTGAATCGATGTCCACCCGGAAGCCTGCGCTTTTAGATGACCCATCAACCACCTCTTCCTTTCTCCGTTTCCTCTTTTCATTTGAAGTTGTTTATGTGAACAACGCTCCATTCCCATCGGACACTTTAAAATCATGCATGTCAGCTGCAAAAACAATGTCTTTGTAAATCTATTTTCACTTAACCTGTTTCCTTTTGTAGTTTTAATTATTTTATCCCTTAAATGTTGTGGTTTATGAAAAATCTGAAGATTTAAACCGTTACAATATTTAGATTGATTAATTGGGCTTTAATTACTTTGTTGGCTACTACTGGAAAGGCTGTTTTTCTGGtgttaaaaaaaatccaaaaaacaAGCATGTTAAAAAGCATGAAGGATCTTTCCTCCTTTTGGACTGTATGTAGCCTGACAAAGACGACAGAACAGATTGTGTTTAACATTATCAGCGAGAGAGCAGAAACCAGGATTGGGCCGTTGCTCCCAGACCTTTTTGTATAATTGAGTCATTTTAAAGACTGTGTGTGATCTGCTGTGTAAAAGAGTTTGTTTATCATATGATTATGAATAGCCTGTATGCATGTTTCCGGTTGTGCGTTTGAGGATTATAAAGTTCATTTATGGGTGCACAGGAGTATGACCTGAATCTATTGTTCTGTATTTATGTTAGTTTATTCACTGTCTTAACTTTGATCTGAATAAAGCTCTAACACATTTTTTGAAAATTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2325386 lncRNA downstream 7840 44490652 ~ 44492071 (-) True G2032907
TU2325401 lncRNA downstream 60055 44439647 ~ 44439856 (-) True G2032922
TU2325397 lncRNA downstream 64610 44435030 ~ 44435301 (-) True G2032918
TU2325391 lncRNA downstream 80095 44419462 ~ 44419816 (-) True G2032912
TU2325309 lncRNA downstream 128034 44371471 ~ 44371877 (-) True G2032835
TU2325427 lncRNA upstream 11655 44530618 ~ 44534049 (-) False G2032945
TU2325430 lncRNA upstream 11655 44530618 ~ 44534049 (-) False G2032945
TU2325431 lncRNA upstream 11655 44530618 ~ 44534049 (-) False G2032945
TU2325432 lncRNA upstream 11655 44530618 ~ 44534049 (-) False G2032945
TU2325433 lncRNA upstream 11655 44530618 ~ 44534049 (-) False G2032945
XM_036963664.1 mRNA downstream 437 44475594 ~ 44499474 (-) True LOC110506880
XM_036963452.1 mRNA downstream 116029 44257074 ~ 44383882 (-) False LOC110506172
XM_036963453.1 mRNA downstream 116029 44257074 ~ 44383882 (-) False LOC110506172
XM_036963456.1 mRNA downstream 116029 44257074 ~ 44383882 (-) False LOC110506172
XM_036963455.1 mRNA downstream 116030 44257074 ~ 44383881 (-) False LOC110506172
XM_036963925.1 mRNA upstream 76474 44595437 ~ 44650972 (-) False LOC110506176
LOC110506895 mRNA upstream 112651 44631614 ~ 44633926 (-) False LOC110506895
XM_036964480.1 mRNA upstream 186405 44705368 ~ 44923032 (-) False LOC110506903
XM_036964481.1 mRNA upstream 186405 44705368 ~ 44923032 (-) False LOC110506903
XM_036964482.1 mRNA upstream 186405 44705368 ~ 44923032 (-) False LOC110506903
TU2324949 other downstream 594671 43899500 ~ 43905240 (-) False LOC110526988
TU2324940 other downstream 618179 43879193 ~ 43881732 (-) True G2032544
TU2324491 other downstream 929857 43569160 ~ 43570054 (-) True G2032150
TU2324286 other downstream 1302083 43191698 ~ 43197828 (-) True LOC110506858
TU2324292 other downstream 1314187 43184636 ~ 43185724 (-) True G2031974
TU2325823 other upstream 334890 44853853 ~ 44923017 (-) True LOC110506903
TU2325845 other upstream 420275 44939238 ~ 44956893 (-) True LOC110506178
TU2326479 other upstream 820134 45339097 ~ 45358692 (-) True LOC110506182
TU2326571 other upstream 1064795 45583758 ~ 45588702 (-) True LOC110511667
TU2326647 other upstream 1236033 45754996 ~ 45759682 (-) True G2033970

Expression Profile