RNA id: XM_036963925.1


Basic Information

Item Value
RNA id XM_036963925.1
length 6753
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110506176
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44595437 ~ 44650972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTGCAGTTGGTGCTAAAGTGTAATTACGTCATTCTAGGTGGAAACAAAGCCGACTGGGTGCCTTTTTAGCACCACACGCGCGCGCGTGAGAACGCCGACAGCTCGGTTCCAACAGCTACCGCAAATCCGGTCCCGGAGTGAAGACATAGTCCACCTATTGGAATACAATACAAAATATGATAAATTAAGGATTATCCGAACGGGAGTGACTGGGGATCGAATCGGATCTTTTGGCTGGTTATTTACTACGGTGTCCGACTGGAAAGTATATTATGGTGTATGGTTCAATTGAAGAATGAATGTTGTGCGTCAACTTCGCATTGCTGCCGCCTTGTTTTGATGACTTTGAGGAATCTATACCTTTTGAATGCTCACTCGGATGAGAGCAAATGGAATCGTGCGTTAGggtcatcctcctatctctctcataAGGGGGACAGGTCTCCCTTGTATTTGAGACGTTCCATCTCAATGGCATCCCCTGTACAGTATACTTAAAGAATAGGAGATTAACGAGGATATCAACATCTAGCTCCATCCCACACCACATGCCATGGATCCTCTACCAGAGTACTCCCTGTTCCTAGTCCGGATCCTGGAGGAACTAGACACTAAACACAGTAGTGTGTCCTACCAGGACCTCTGTAAGTCCCTGTGTGCCCGCTTTGACTTGGTCCACTTGGCCAAGCTACGGAGCCTTCTGTTCTACACAGCCTGCCTGGACCCAGCCTTCCCGGCCACTCTCTTCAAAGACAAGATGAGATGTACTGTTGAGGACCAGCAGTCTAAGAAACTCATGGTGGCAGCGGATATCGTCACTATGTTTAACCTAATCCAAATGAATGGGGGGATGGCCAAAGACAAGCTCCCAATGGCACCACCGAGGCCCAAGTTCCACAAGAACCAGTCGTTTGAGTCATGTAGGTCCGACACTGATGTTTATAAGTACCAGGACTATGAGAGGGGCGGAGGTTATGACCTCATGGATCAACCCTCCAGGGCGGGTCACCACCCCCACCATCGCCCCATGTCCCAAAACAACTCCTCCCACCCCCGCCCACACCCCCATTCCCACTCCGCCAGCTCGAAATCCAACTGCAGCCCACAGTTTATCCCGACCTCGGACCCTAACTTCCTATTGGGCGTAAACAAGGATCTGAAATGTCGAGCAGCGTCGCTAGACAAGCTGCAGCACCTGCCCCAGTACTCAGGCTGCAGTCCTCCATCGCCGCCCTGCGAGATGCAGAGCACCTACTTTCCCATAGACATTGACAGTGAGTCCACCACAGACCAGGAGTCCCTGCAACACATCAACCACACGGAGCCCTTCTCTGTCCACTCCTGTGTCCAGAAGAGAAACATCTTCAAGGAGGATTTTCACAACCTGCTAGCGTTCTCCCCACAGGTCATCACCTCAGAGTGCAAACCAAACATCAGGGCAACTGGAGGCTACCACCGGAGAGAGCTCCACAAACCTGCCACATTCTTCAACCACAGCTTCGAGCTGCCCTACAGTAACCCCTACTTTGAGCCTACTATGAACTCGCCCATTCAGGAGAAACGGCGAGCGAAGCACGAGAGTCTGGACGACCTTCAAGCGTCTACGTATTTCGGGCCAACGACAGTGACAGAGTGCGTGAACACACGGAGGAGTACGGCTAGGCCGGGGAAGCAGCCAATTTGGCCCGTCAAAAGCCTGAGTCTGAATGCTGAAGAAGGGCCACCGGATTTTGAGAGGTCATTTCTGAATGGGAAACCGCTGAAAGACAACCATCGCCACAATGTAGTCAATAAAGAGAATGAGCAGCACTTCCAGTGTGCCAAAGAGAAAGTGGTGGCCTCCCCTTCAGGGTTCGCAAAGAAAACCAACGGGTTGAAAACAAAGGATATGTCTTCAATGGCGTGCGGTCCCGGGGTGGGTGTCGACAAAAGAGAGGTTGGGAAAAGATTTAAAGAGAAAGGCATCAACAGTACGTCTTTTCAAGGAGGTAACATAGACAGCTCGTCCAGCATAGGGACACAAACGGAGCAGGCCGAACAGAGGAAGCTAAAAGACTATGCCGCCGCTCACGCAAAATAcgtcgagagagagaggcattcgTGCAAACACTCGGAAGAGGACTCTGAGATCATCAGCGATGACATCAGTGACATCTTCCGCTTCCTTGACGACATGAGCGTGTGCGACTCGCTGGGCGTCATCCAATCGTCGTGCTACAACAGCATCGGATCTCTCTCTCAGGTGACCATGAAGTCTGACGGCGACAGCTCACCCGAATGCAACACGGTCAAACTGGCCAAGTCCAAGCTGGACTGCCTCTTTCATTCCCTAGAGAACACGGACGACGAGCTCAAATCGAGCGTGTGCAAGCTTGTTATGAGGATAGGTGAGATCGAGAAGAAGCTGGAGTCTCTGTCCGGAGTCCGAGGAGAGATCTCGCAGGTGCTCTCCAAGCTCACCAAACTCGACGAGAAGATCCAGGAACCCGAAACCAACGGGAGACCAGGCGAAAACGCTTTAGCCACCACATCCACCCCAGATCACCTTCACCCCGACCCCAACCTCTCGCCCCATGTCTTTCAGTGCCACACGACAGGCCACAACATCAAGGTGGATAACGGATCAGTGGAGTGGGGCTGCTCAGACAGTGAGAGTCTGAGGGTCAAGGCAATTAAGAAAAGTATGTTCACGCGGAGGTCGTCACGCTCACTCAATGAGGAGAACAGCGCCACGGAGTCAAAGGTGGCGAGCATCACCAACTCACCACGGGACTGGAGAACGGTGTCGTATTCTTCGCACCATGGGGATGAGGGCAAagacaaggacagagacagagaccgagaaaGGGACACCAAGGACAGACACAGGAAAGCCAAAGAGTCAGAGCGGGAGCGCCAGTATGAGAAGGCCCCCCAGGTCCACCGCTCCTCAAAGCCCCCCAAGGACTCCTACCTGGTGGAGCAGGTGTTCTCACCGCACCCCTTCCCCCCCTCCGTCAAGTCCCACATGAAGGGCAGCCCCCTGTACACAGACCTCAGGCTCACAGGCCTGTCGGTTGACGGCAAACGGGGTCAGCCCTCCTGGACCATCGAGGAGTACAAGCGCAATGCGGGTGGCGAGAAAGGCAAGCAGCTGACCGCCCTGGACCTGCAGACGCAGGAGTCATTGAACCCCAATAACCTGGAGTACTGGATGGAGGATATCTACACGCCGGGTTACGATTCGCTGCTGAAGAGGAAGGAAGCGGAGTTTCGGAGGGCCAAGGTGTGCAAGATTGGAGCACTGATTGCCGCGGCCGCCTGCACTGTGATCCTGGTCATCGTTGTGCCCATATGCACTATGAAGTCATGAAGTGCTCCAAGTCGTGCTCTACGAAGTGCTCAAAGTCGCACACTTTCCCTCTGCCCCTGTTTATTCTGGCTAATTGTAAAAGGACTGAATACGTGTGAGCTATAAGGTATCAGTCCAATTACAGGAGCAGCCCTCTGATTGGCTATGTGGACGTTTGAAGAGTGAGGTACATGTATTGTTTAATGTGAATCTGACCTATGTTCATGGTTTAGTTGTTATGCCACGGGATGGGCATTGGTATTAGGAAATCGTCAGTACACATTCAAAATGACTTTGTTCAGAGGGGAATGTTGCAAGTTTGATCTTTTCTATTGTTGCCTATATTTACTTATTGACATTTGTGTATTTATGATGAAAGACAGACGGTACACAATGTCTACAGTATATCTTTTACATTTCCATTTATATTGTATTGGTGTACGATGTTCCAGAATATTACGAGAAcaatgtttatttcactttttctcttcgttaaaggggcaatctgcaatcCAAACAAAAGCAACAAAGCGGCTACCCAGCCAATGTTTTTGTGAACTGAAACAGATGATCTGTACAGTATACGGTCGACAGCTGGATTTGTTTCTGTACACAGCTtctgatatttttattttactataaTTGCTGTATAATGTATTTTAATGAGAGTTATTTTTGGATGAATTATCTGGTAGAATGTGATGAGGTGCACCAGATATGATTTATCTTTATCTATTATAATAATAACCAGAGTTTTAATTCATGGGATTTTGTGCAATGCCTTTTCTAAAtagacatatacagtatattgaagtACTGTAGTTGAAATAGACGAATAacagacagtacatacagtagATTGTAAAAACAATATAAAACACTACAGAGCTAACCTGAATGTATTGAAAGTAGCATTACTCACAGAGAGAGCAAAACACACATATCATTTCTCATCGTCTCTTGAGCAGAATTAAGTTGAATGTTGTTCTCCTTTCCTTGCTTTAGATAGTTTAACTACTAGCCAAAAGCACATAGCTGCAGTAGGGAGCTCTGAAGTAGGGAGTTATTATTTGCCTTGTGAGAGTCTTTAATACAGTAAATACTTGACGTTTCTACTGTTGACTAACTGAGCACCTCTGGGAGAGACACTTGCATTAGTTCAGTCACTGGGAGAGACACTTGTATTAGTTCAGTCAGTGGTATCGACTGCACCAATCTCCCAGGCTGTCAGAAACACTAACACTTGCAGAAGCTTCTTATGAGGTGCTGTGTCACCTTATAAACATTCATAGCACCTTCTATAGAGCATTATGACATGTTGTATTAATTAAGCAATACGACACAATAGGTTATGATGTATCGTAGATGTATGACATCTTAGTAGCCCCATGTCTCGTTGCTTTACTGTACAGCTTGGTAACGGTCCATGACTGCATTCCAATGTGCTTTGAATGTGCTATGAAGGTTTATAAGGCATTGTAACACTTCGTAAGAATCTGATTCAAGTAAAGAAACAGTCCCTCCACTCAAGCCCTGCCTACCCATCTAGTCTCCTAAGAGGCCTTAAAACCACTGAATGCAAACTGCCTGCCGTTAAGGCAACAGTTTTGAAGAACGTCCTTGTCTCATCATCAACTGTAGCGGTGGTGATGAAAGGTTGGGGAAGCTCTTTCATAGTTCTGGGACACAACGTGAGATTCACATCTCCACTCATGAACCTGAGCTCAGAGACAGTATGCAAACCAAGATGGCCGATCACACACACGTCACTCAGCTAACAGTAAACCAGGGGATGCTCTACTCCAGTCCTCCTTGGTTTCCCTCTCAAGTTAGTTCATTTAGGCTGTGTTCCAGGCTGACTACATTGCAGACTCCTGGCAGATATCAAAACGCCTGGATAGATGTTTAagatatcagctaaccacatcctATGATGTAGCAATCTGATGCCTGACTGCAGTTGATGACGTGGCAAGTAACCGTTGGTTGATGCAATGCAACGTCTGCAATTTAGTTGGCTTGGGACACAACCTTTTATGCTAGTGATTTATTTGCCACTTCAGGTGTTCCTGGCACAAATGGGAGAGAACATTGTCATACTGCAAAAATGTACATGAGGAAGTACGCACTTCAGGTTGTAAACATTAGAATTACTCTTGTTTAATATAATCGTTGAAAAGTAGACACTATAACCTGATAATGAAGCACTGGACCACTCAGTTTGATGTCAGGTTTGACCGTtaggagaggactggagttgagCCCCCCCACCTAATGGGTGAAGGGTGAAGTTACTGCCGGTTGACTTTTATTGTCATCagtcttgttctggaggcagaatTGAGCGAATCCTCCTTAGATATGTCAGATGCgaagtcaaaattgtctatattgtaaaaatgttatttaatgttagggttaggcattagggttagcagtgtggttaatgttagggttaggcattagggttagcagtgtggttaacgttagggttaggtttaaaatcagatttgatAACTTTGTGGCTGCGCCctctagtgaccactctgcagagctgcctccagaacaagattcaggATGAAAAACGCTGACCTACGAAGATGCctctagatgctgatcttgggtcactTTAGCATTTTCCTCACCGATGGattggggaggggaagctgatcctagatctgtacctagggggaaCTTCTCCCCTGAGCAGTGTAATGATTACCCAGTGGATTTGCCTTCAACACAGGAACTGTGAGCCGCAGcacactgtagtagtctgtaaaTAGTTAGATGCACACATCATGGCAACAGGTGTAAACTGGAATATACCACAATAAAAGGCAACTGTTCTGActgttactgtgtctgtgtgactggaCCTCTCTCTCGCAAAGTAGCAACTGTTGTTTTTAGGTGTCCTTTGAAATGAATATTGGCTGTGTGAAGAGGTTGTCATAGTTACTCTTTATTGTTGTGTGATACTTTTTTATCGTTCACTTATTTCGTCTTCAGTTCGAAGAAGAGGTTCAGTGGAGAGATGACATAATATTACTCAGCATCACAAAGCCTGTGGTTTTCTGAGGGTTTTATTATGTTTTTATCTAGCTGTTCACTATTCATTTATGAGATTCTTTTTAGTGTTCTTCAGTTCATCGTTTGCATAATACTCCGGTTAGACTAATACAGGAGGATTTGTGAAAAGGTCAGGGACCGTACAGTATACATCaatcaagcatctcagagtaaaagtgctgatctaagatcaggtcTTCTTCCTTATTcattataatttaaaaagcagaaCCGGTCTAGCCCTGAGGCACTTTATGAACATGTCCAGATCACTGGTTTAGAAATAAATTAGATAATTTATACTTTACGTACATACGTATGCAACACAAGAACACAATTAGCTACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2325479 lncRNA downstream 5009 44590157 ~ 44590428 (-) True G2032986
TU2325478 lncRNA downstream 6528 44588684 ~ 44588909 (-) True G2032985
TU2325468 lncRNA downstream 11633 44583347 ~ 44583804 (-) True G2032977
TU2325466 lncRNA downstream 12176 44583023 ~ 44583261 (-) True G2032975
TU2325462 lncRNA downstream 14886 44580121 ~ 44580551 (-) False G2032971
TU2325594 lncRNA upstream 40897 44691869 ~ 44692762 (-) False G2033086
TU2325591 lncRNA upstream 41041 44692013 ~ 44692762 (-) True G2033086
TU2325745 lncRNA upstream 49558 44700530 ~ 44701157 (-) True G2033210
TU2325747 lncRNA upstream 55478 44706450 ~ 44710007 (-) False LOC110506903
TU2325765 lncRNA upstream 95800 44746772 ~ 44747909 (-) True G2033230
XM_036963665.1 mRNA downstream 74911 44499911 ~ 44520526 (-) True LOC110506884
XM_036963666.1 mRNA downstream 75578 44499911 ~ 44519859 (-) False LOC110506884
XM_036963667.1 mRNA downstream 76474 44499911 ~ 44518963 (-) False LOC110506884
XM_036963668.1 mRNA downstream 76495 44499911 ~ 44518942 (-) False LOC110506884
XM_036963664.1 mRNA downstream 95963 44475594 ~ 44499474 (-) True LOC110506880
XM_036964480.1 mRNA upstream 54396 44705368 ~ 44923032 (-) False LOC110506903
XM_036964481.1 mRNA upstream 54396 44705368 ~ 44923032 (-) False LOC110506903
XM_036964482.1 mRNA upstream 54396 44705368 ~ 44923032 (-) False LOC110506903
XM_036963359.1 mRNA upstream 281410 44932382 ~ 44956995 (-) False LOC110506178
XM_036963360.1 mRNA upstream 281410 44932382 ~ 44956995 (-) False LOC110506178
TU2324949 other downstream 690197 43899500 ~ 43905240 (-) False LOC110526988
TU2324940 other downstream 713705 43879193 ~ 43881732 (-) True G2032544
TU2324491 other downstream 1025383 43569160 ~ 43570054 (-) True G2032150
TU2324286 other downstream 1397609 43191698 ~ 43197828 (-) True LOC110506858
TU2324292 other downstream 1409713 43184636 ~ 43185724 (-) True G2031974
TU2325823 other upstream 202881 44853853 ~ 44923017 (-) True LOC110506903
TU2325845 other upstream 288266 44939238 ~ 44956893 (-) True LOC110506178
TU2326479 other upstream 688125 45339097 ~ 45358692 (-) True LOC110506182
TU2326571 other upstream 932786 45583758 ~ 45588702 (-) True LOC110511667
TU2326647 other upstream 1104024 45754996 ~ 45759682 (-) True G2033970

Expression Profile