LOC110507985 (LOC106613152)


Basic Information

Item Value
gene id LOC110507985
gene name LOC106613152
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 32528573 ~ 32591906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588412.2
ACGCACGCTTCACTGAGCTCGGGTTCGAAGCACGAGTTAATGAATCCGCTCCCCCGATATATCCTCTTTCTGAATACAAACCAACCGTCTGGCTCTCGCTCCCTAGTCTGATTGCGCTGTGGATTCGCAATTCCGAGACAATTTTAAAACAAATAATTCAGATACCAGCCAGACTTTGCCAGAGGCAAGACACACGGCAGCTCACAGCACTGCGGGCAAGGTTCGGTCCGACcggaacaggagagaggaggattgaGAGAAAGCGATAGGCGCGTTCACACAGGGATAACAGCTGGACTGGATATGCAAATAAGCTGCCAGGAATGAGGGCACGGAGCACCCACGAGTCTTCTCAAGTATTTGATCGATAGGGGATATTAGGGTCAGCTAGCCAGAGCGGGCGCAGTTATAAACAACTCAATGAAGGCGCGCTCACTCGGAGCAAGTTGAGAAACTGTGCATCACAGACTGTCAAAACCCAGCGAGACGTTTAACATATTCAGCTATTAAATAGGCTACAAGTCTACTTTTGcaacaacatggcagtgttttgTCAGAAGGACAGCAGGGTTTGAATGTCTCGGACTGGGAGGACATAAATTGGCAGCCCTAAGGTTTTCGAAATGCCAGAGAATGTTTCGTTCTCCAGGAACCGCACAGAACTGGAAGCGCGGCCGGGGGCGCGTCCCGCATGGGCTATCACTGTGCTGGCCAGCGTGCTGATCTTCACCACGGTGGTGGATGTCCTGGGCAACTTGCTGGTTATCATTTCAGTGCTTAGGAACCGGAAACTTAGGAATGCGGggAACGTGTTTGTGGTGAGCCTGGCCTTTGCTGACCTCGTGGTGGCCTTTTACCCCTACCCATTGGTGCTCTACGCCATCTTCCATGACGGCTGGTCGCTGGGAGAGACACAGTGCAAAgTCAGTGGTTTCCTGATGGGCCTGAGCGTCATTGGCTCCATCTTCAACATCACCGGCATCGCCATCAACCGCTACTGTTACATCTGCCACAGCTTTTCCTACGACAGGCTGTACAGCTACCGCAATACCCTCTTACTGGTGGGGCTCATCTGGCTTCTCACCATCCTGGCCATCATACCAAACTTCTTCGTAGGGTCGCTCCAGTACGACCCCAGGGTGTATTCGTGTACCTTTGCCCAGGCCGTCAGTACATCGTACACCATCACCGTGGTGGTGATTCATTTCTTTGTGCCCATAGCCGTGGTTACCTTCTGCTACCTGAGGATCTGGATCCTGGTCATCCAGGTGAGGAGGAAGGTGAAGTCAGAGGTGAAGCCCCGCCTCAAACCCAGCGACATGCGCAACTTCATCACCATGTTCGTGGTGTTCGTGCTCTTTGCCATCTGCTGGGCGCCGCTCAACTTCATCGGTCTGGCCGTGGCCATCGACCCAGAGACGGTGGCGCCACGGATCCCCGAGTGGCTGTTCGTGGTCAGCTACTTCATGGCGTACTTCAACAGTTGCCTTAACGCCATCATCTACGGCCTGCTCAACCAGAACTTCCGTAAGGAATACAAACGGATTATCATGTCCATGTGGATGCCTGGTCTGTTCTTCCAGGAGGCGTCACAGGGGGGTACAGAGGGTATGAGGAGCAAGCCCTCGCCCAGACTGGGACTCAACAACAACGATCACGTCAAGGGAGAGGCTTTGTGACGCTGACTCCAAGgttcttctctcctccactcctctcctacACTCCTCCCCTATGGTGTTGTTGGACTTGtttcttttttcttctctctctctctctctctctctctctctctctctcttttcagtcaTGGAGTCCCATTTCTCTCCTGTATCTCACTGACTGCACAGTTGTGCTGTTACCGAAGCCTCAAAGAACAGTCAGAATGGTGCGTATtaaagagaaagacacacacaatgGTGTTGACTGATGCTAACTGACTGTGTTATTCACAATTCGAAGAGTGCCATTCATGAAGCATATATGTTCTAACTTATTATGTATCATGTCCTTAAGTATACACCTCAGGCTGCCTGCCTCCTCTCTGCTGCTGTAGCATTATGCATTTCAAAGTTTAAGCCCCAAAAGTattattgcatttttttttaccccattaCGCCCATGACATTTTTGTATAAGACAGGGTATTTAAAGACACATTTGTTATCTTCACAGTTTCCTCTGTAAAAGTATTTATCACACAGTTTATTTTCTATATCGATATATCTATATCATTGTGACAATCATTATGGCCAGCGTACATTAGCGTAGAAAACAATTTGTAAAAACCCTATTGGTTGTAAATAACAAATAAGTGAGGGAGCATGCCAACGGTAGGAGCTCACAAGGTCCTACTACTAACTAGGCAATTGGATTGTCAAACGGTGCCTGATTTTATGCTCATGATCTCAAACAGGAGATTTACCAAAAACAACCCCTTTACAATTTAACCCAGTTAGTATGGGTTAACTCGTTAGGGTTGGAGTCAGCATATAGCGTTAGGCTTAGAGTTACACAAGGATATAAGACTGAATAGACAACTACATTAGATACATCAGCAGATTTGGTCATTTCTGTTGAGTCAGGAATGGGGTGCTGTGATGCCCCTCGACGGAGTGTCCTGGAAAAACCCTCGCTGGTACATTATAAGCACAATAAAGCTGTTTTATCTCGGACGACATTGTACTTATGCAGTTTACAGGTTTCAACTGTACTCTTAGTAATGCATGAAGACATGTGACCTATTCTATGCATTTTACACTTCATGTCATTACCTTAAAACACTACAGCAAACCAACTTAGTCAATACGATATGTGAATAAGGACAATACTGTTTTTATGAAGAAGTTCATCTTAGTACAAATCAAGTGAATTAATTCAGGCCGTAATGACGCTGAATACCGTTGTTGTGATACTGTGTTCCGTGATGATGGAGAATGTGCATGATACACTTTGATGCTTTGTGTATTGTTTTggttgtttgttttttattttagtttTGCTTTGAAGAAACTAGGgtctctattcaatccgtatcgcggaagttcagcgttacagcgtgattgaaatttaaaagcaatgttcccgcgttagcagagactgcattcactgTACACACTGCATATGTTAGTTCAATTGGAAATGACCTTCATATTTCTATTGATGATCTTGTGAAAACTGCTGCTGAAGCTATCGATGATGTTGACAAAGattatatgatgatgatgatgatgatggtaagaGGAAGATCATTCTTAATTGGCATGTATGCATGTGGATGCACAGGGAGAAGGAGCGCAGTGGTCAAGCTataagattttttattttttcattaagAGAAATACATTGTATTTATTGCTGTGATTTACGTATAAAACTGATGAAGAATATGCTTTTGAAGGGTTGTCAATGTAAAAGTTTAGATGTTAATAAAAACCTTTA
>TU2372396
TGAGGGCACGGAGCACCCACGAGTCTTCTCAAGTATTTGATCGATAGGGGATATTAGGGTCAGCTAGCCAGAGCGGGCGCAGTTATAAACAACTCAATGAAGGCGCGCTCACTCGGAGCAAGTTGAGAAACTGTGCATCACAGACTGTCAAAACCCAGCGAGACGTTTAACATATTCAGCTATTAAATAGGCTACAAGTCTACTTTTGcaacaacatggcagtgttttgTCAGAAGGACAGCAGGGTTTGAATGTCTCGGACTGGGAGGACATAAATTGGCAGCCCTAAGGTTTTCGAAATGCCAGAGAATGTTTCGTTCTCCAGGAACCGCACAGAACTGGAAGCGCGGCCGGGGGCGCGTCCCGCATGGGCTATCACTGTGCTGGCCAGCGTGCTGATCTTCACCACGGTGGTGGATGTCCTGGGCAACTTGCTGGTTATCATTTCAGTGCTTAGGAACCGGAAACTTAGGAATGCGGggAACGTGTTTGTGGTGAGCCTGGCCTTTGCTGACCTCGTGGTGGCCTTTTACCCCTACCCATTGGTGCTCTACGCCATCTTCCATGACGGCTGGTCGCTGGGAGAGACACAGTGCAAAGTGACTAAgacctg
>TU2372395
TCCTGTATCTCACTGACTGCACAGTTGTGCTGTTACCGAAGCCTCAAAGAACAGTCAGAATGGTGCGTATtaaagagaaagacacacacaatgGTGTTGACTGATGCTAACTGACTGTGTTATTCACAATTCGAAGAGTGCCATTCATGAAGCATATATGTTCTAACTTATTATGTATCATGTCCTTAAGTATACACCTCAGGCTGCCTGCCTCCTCTCTGCTGCTGTAGCATTATGCATTTCAAAGTTTAAGCCCCAAAAGTattattgcatttttttttaccccattaCGCCCATGACATTTTTGTATAAGACAGGGTATTTAAAGACACATTTGTTATCTTCACAGTTTCCTCTGTAAAAGTATTTATCACACAGTTTATTTTCTATATCGATATATCTATATCATTGTGACAATCATTATGGCCAGCGTACATTAGCGTAGAAAACAATTTGTAAAAACCCTATTGGTTGTAAATAACAAATAAGTGAGGGAGCATGCCAACGGTAGGAGCTCACAAGGTCCTACTACTAACTAGGCAATTGGATTGTCAAACGGTGCCTGATTTTATGCTCATGATCTCAAACAGGAGATTTACCAAAAACAACCCCTTTACAATTTAACCCAGTTAGTATGGGTTAACTCGTTAGGGTTGGAGTCAGCATATAGCGTTAGGCTTAGAGTTACACAAGGATATAAGACTGAATAGACAACTACATTAGATACATCAGCAGATTTGGTCATTTCTGTTGAGTCAGGAATGGGGTGCTGTGATGCCCCTCGACGGAGTGTCCTGGAAAAACCCTCGCTGGTACATTATAAGCACAATAAAGCTGTTTTATCTCGGACGACATTGTACTTATGCAGTTTACAGGTTTCAACTGTACTCTTAGTAATGCATGAAGACATGTGACCTATTCTATGCATTTTACACTTCATGTCATTACCTTAAAACACTACAGCAAACCAACTTAGTCAATACGATATGTGAATAAGGACAATACTGTTTTTATGAAGAAGTTCATCTTAGTACAAATCAAGTGAATTAATTCAGGCCGTAATGACGCTGAATACCGTTGTTGTGATACTGTGTTCCGTGATGATGGAGAATGTGCATGATACACTTTGATGCTTTGTGTATTGTTTTggttgtttgttttttattttagtttTGCTTTGAAGAAACTAGGgtctctattcaatccgtatcgcggaagttcagcgttacagcgtgattgaaatttaaaagcaatgttcccgcgttagcagagactgcattcactgTACACACTGCATATGTTAGTTCAATTGGAAATGACCTTCATATTTCTATTGATGATCTTGTGAAAACTGCTGCTGAAGCTATCGATGATGTTGACAAAGattatatgatgatgatgatgatgatggtaagaGGAAGATCATTCTTAATTGGCATGTATGCATGTGGATGCACAGGGAGAAGGAGCGCAGTGGTCAAGCTataagattttttattttttcattaagAGAAATACATTGTATTTATTGCTGTGATTTACGTATAAAACTGATGAAGAATATGCTTTTGAAGGGTTGTCAATGTAAAAGTTTAGATGTTAATAAAAACCTTTACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588412.2 False 3438 mRNA 0.45 3 32528573 32591902
TU2372396 False 613 TUCP 0.52 2 32528897 32588772
TU2372395 True 1619 lncRNA 0.37 1 32590288 32591906

Neighbor

gene id symbol gene type direction distance location
LOC110507983 LOC106581345 coding upstream 39914 32270206 ~ 32488659 (+)
LOC118944767 NA coding upstream 656866 31870740 ~ 31871707 (+)
LOC110507951 LOC106581346 coding upstream 660273 31853996 ~ 31868448 (+)
efhd1 LOC106581350 coding upstream 757808 31748676 ~ 31770765 (+)
trnag-ucc-233 NA coding upstream 780221 31748281 ~ 31748352 (+)
LOC110507986 NA coding downstream 351905 32943807 ~ 32963656 (+)
vwa7 LOC106581332 coding downstream 487892 33079794 ~ 33093823 (+)
LOC110507993 LOC106581333 coding downstream 513281 33105183 ~ 33111804 (+)
LOC110507998 LOC106581335 coding downstream 566966 33158868 ~ 33181390 (+)
LOC110507999 LOC100380744 coding downstream 592676 33184578 ~ 33195813 (+)
G2074834 NA non-coding upstream 24131 32504156 ~ 32504442 (+)
G2074832 LOC106604997 non-coding upstream 26646 32501598 ~ 32501927 (+)
G2074656 NA non-coding upstream 43676 32484666 ~ 32484897 (+)
G2074624 NA non-coding upstream 114981 32413325 ~ 32413592 (+)
G2074958 NA non-coding downstream 20453 32612355 ~ 32612570 (+)
G2074966 NA non-coding downstream 26988 32618890 ~ 32619103 (+)
G2074970 NA non-coding downstream 28438 32620340 ~ 32620605 (+)
G2075032 NA non-coding downstream 77259 32669161 ~ 32669427 (+)
G2075035 NA non-coding downstream 78509 32670411 ~ 32670805 (+)
G2074650 NA other upstream 63697 32464238 ~ 32464876 (+)
G2074577 NA other upstream 216297 32311990 ~ 32312276 (+)
G2074502 NA other upstream 331369 32196813 ~ 32197204 (+)
G2074227 NA other upstream 552072 31968537 ~ 31976501 (+)
G2074973 NA other downstream 31722 32623624 ~ 32623968 (+)
G2075208 NA other downstream 396599 32988501 ~ 32990228 (+)
G2075508 NA other downstream 924339 33516241 ~ 33521004 (+)
G2075687 NA other downstream 1225630 33817532 ~ 33817988 (+)
G2075724 NA other downstream 1307375 33899277 ~ 33899623 (+)
LOC110507985 LOC106613152 other upstream 1516 32528573 ~ 32591906 (+)

Expression


Co-expression Network