LOC110508044 (LOC106581474)


Basic Information

Item Value
gene id LOC110508044
gene name LOC106581474
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40992078 ~ 40996568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588491.2
ATGGCGCACCTCTCTGCCAGACTCCTGCTGCTGGGGCTTCTCCTGTGGGCCAGCTGGGTTTGCTCTGCCGCACCCCAGGACGGGTGCACTTTCCTGGGGGAAGAAGAGACGAGCAGCTTCTATCAAGAGGGAGACGTGGTTCTTGGGGGCTTGTTCCCACTCCACTATAGTCCTGTGTCCTCTGTGACATCATTTCAACGGGAACCGCAACAGACTACATATGATTTCAGTGCCAGGGCCCTGCGTTGGATGGAGACCATGATGTTCGCAGTGAAAGAGATCAACCAACGAAGGGATCTGCTCCCACACCTGACGCTGGGGTTCCATATCCGCGACAGCTGTGACCATGTGCCTGTGTCCCTGAGAGGCTCCCTGCTGCTGGTCAACGGGCATCCAGAATGGGGGGCAGACTACAGGGGAGCAGGTCAGGGTCCAGGTTCGGACTGCGCCGCTGTACGCAGGGCTGTATCCCCTGTTATCATAGGAGATGCCGCCTCTGGGGTGTCTATGGCTGTGCTCAGAACTCTGGGCTCCTTTCAAATACCCCTGGTGAGCTACTTTGCGTCCTGCAGCTGCCTGAGTGACCAGAAGCAGTTCCCCACGTTCATGCGCACCATGCCCAGTGATGCCTTTCAGATAAGAGCCCTGGCTCGCCTGGTACGCTACTTCCACTGGACCTGGGTGGGCGTCATCGGGGTGGAGTCTGACTATGCACGTTTTGCCATCCAGTTGTTTCTACAGGAGTCCGTTCACTTTGGGATGTGTGCTGCCTACGTCCACTTCTACCCAGTGGTCCTTACCCAGCATGCTGTGGGACAGCTAGTGGACACTATCCAGGGGTCGTCCTCCCGAGTGCTCCTGAATTTCTCCGGCGAGTCGGAGCTTCGGAGTATCCTCAGGGAGTGTCTCCATCGGAATGTCACAGGGCTGCAACTGATCGCCAGCGAGGCCTGGGCCACCTCCAAGTCCCTGTGGAGAGAGTTTGGAGGTCTCCTGACAGGAACGCTGGGATTTGGAATACGGAAGGCTGATGTTATTCCCGGGCTCAAAGACTTCCTGACCAGACTAGGACCATCCCATGGACGTCAGTCGGCTTTCCTGGCAGAGTTCTGGGAAGAGACATTCAACTGTAGAGTGAATGAttccttaaacacacacactcactctgtcaGTTACCTGGACAGAGAGCCCTGTAGTGGAAGAGAGGTTCTGGGGGATGTGTACACACCCTTTGCCGATGTGAGCCAGCTCAGAGTATCCTATAATGTGTATAAGGCTGTGTATCTCATCGCCCATGCCCTGCAGGATATGACCAACTGTGTGGCTGGGCAGGGGCCTTTTATCAATGGCACCTGTGGGGACCCAAAGCATGTTAAACCATGGCAGCTACTACATTACATGAAGCAGGTGAAGTTTTCCACACTCGGGGAGGAGGTCAGCTTTGACCACAACGGTGACCCCATCGCTTCCTATGACCTCATGAACTGGCAGAGGGGGCAGGATGGCTCCCTGCGATTAGTTAAAGTGGGGTTCTATGACGCCTCATTGGCCGATGGCCGAGACCTGGTCATAAATGAGTCAGTGATTCAGTGGCCTGTGGGAAAGCAGGCAGCTCGATCAGTGTGCAGTGAGAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTTGACTGCATCCCCTGTGCTGAGGGAGAGGTCAGCAATCAAACTGATTCTTTAAACTGCATACGCTGCTCTGACGTCACGTGGCCAAACGAGGCCAGAGACCACTGTGTTCCAAAGACCATAGAGTTCCTGTCCTATCAGGAGTCCATGGGCGTCGTCCTGTGTGTGGTATCCATTCTTGGGGCCTGTGCCTCACTCTCTGTCTTGGCGGTGTTTGTTGCCAACCGACACACTCCCATCGTCCGCGGCAACAACATGGAGCTgagcttccttctcctcctcttcctctccatctgctTCCTGATTGGACTGTTGTTCATCGGGGAGCCCTCAGATTGGCTGTGCCGGATCCGGTACCCAGCGTTCGGGGTGAGCTTTGCCCTCTGCATCTCCTGCCTCCTTGCCAAGACCATGGTAGTCCTCATGGCCTTCAGGGCCACCCTGCCAGGAAGTGATGTCATGAGGTGGTTTGGCCCTGCCCAGCAGAGAGccagtgttgtgttgtgcactgCCGTCCAGGGACTGATCTGTCTCATCTGGCTGCTGACCAGACCTCCCTACACCAACCTCAACACCGGCcacatcagctctgtcatcatCATCGACTGTGCCATGGGGTCAGAAGTTGCCTTCTGGTGCGTTCTGGGATACATCGGCCTCTTGGCCTGCATGTGCTTCATCCTGGCCTTTCTGGCCCGGAAACTGCCGGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTTTGCTGTGTGGATAACCTTTATCCCTGTGTATGTGAGCACAGCAGGAAAGTACACAGTGGCCGTCCATGTCTTTGCCATTCTAGCCTCAGCCTTTGGCCTCCTGGTCTGTATATTTGCCCCTAAGTGCTACATTGTAGTGCTCAGACCAGAGAAAAACAGCAGGAAACACATGATGCTCAAAGGATAATATATTTCCATGTGATGATTCCTGATCAGTATGTGGAATCAATATATTTTATTAATAAAAAGTCGTACCAGTTTATAACACATTCACCACAGAGTTAATGTGCAATATTgaccatgtttaatatgttaaaTATTTTTCATAGGTT

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588491.2 True 2776 mRNA 0.54 8 40992078 40996568

Neighbor

gene id symbol gene type direction distance location
LOC118944684 LOC106613262 coding upstream 84765 40904514 ~ 40907313 (+)
LOC110507226 LOC106581479 coding upstream 113976 40857130 ~ 40878102 (+)
LOC110508042 LOC106613262 coding upstream 144937 40840706 ~ 40847141 (+)
LOC110507225 LOC106581476 coding upstream 152014 40692403 ~ 40840064 (+)
LOC110508037 LOC106581457 coding upstream 321999 40661246 ~ 40670079 (+)
LOC110507231 LOC106581468 coding downstream 166675 41163243 ~ 41168484 (+)
LOC110508049 LOC106581477 coding downstream 183918 41180486 ~ 41185464 (+)
LOC110508050 LOC106581466 coding downstream 198232 41194800 ~ 41203695 (+)
LOC110507232 LOC106593204 coding downstream 488621 41485189 ~ 41507173 (+)
dhx36 dhx36 coding downstream 524878 41521446 ~ 41571922 (+)
G2083002 NA non-coding upstream 14706 40977153 ~ 40977372 (+)
G2082987 NA non-coding upstream 49248 40942502 ~ 40942830 (+)
G2082985 NA non-coding upstream 51015 40940761 ~ 40941063 (+)
G2082974 NA non-coding upstream 59075 40932743 ~ 40933003 (+)
G2082897 NA non-coding upstream 60518 40851799 ~ 40931560 (+)
G2083162 NA non-coding downstream 144000 41140568 ~ 41140779 (+)
G2083190 NA non-coding downstream 174598 41171166 ~ 41172307 (+)
G2083193 NA non-coding downstream 177365 41173933 ~ 41174215 (+)
G2083217 NA non-coding downstream 202454 41199022 ~ 41199342 (+)
G2083233 NA non-coding downstream 213643 41210211 ~ 41210772 (+)
G2083005 NA other upstream 7224 40981370 ~ 40984854 (+)
G2082162 NA other upstream 1034327 39957215 ~ 39957751 (+)
G2081949 NA other upstream 1058243 39931874 ~ 39933835 (+)
LOC110507223 LOC106613251 other upstream 1079000 39781189 ~ 39938079 (+)
G2083239 NA other downstream 215636 41212204 ~ 41212772 (+)
G2083851 NA other downstream 974691 41971259 ~ 42112036 (+)
G2084156 NA other downstream 1263955 42260523 ~ 42261637 (+)
G2084659 NA other downstream 2066720 43063288 ~ 43064257 (+)

Expression


Co-expression Network